Basic Information

Insect: Trichomalopsis sarcophagae
Gene Symbol: -
Assembly: GCA_002249905.1
Location: NNAY01000947.1:1905-9009[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.8e-05 0.0062 16.7 1.4 1 23 439 461 439 461 0.96

2 18 1.8e-05 0.0019 18.4 1.3 1 20 467 486 467 489 0.94

3 18 1.9e-05 0.0021 18.2 0.7 1 23 495 517 495 517 0.98

4 18 4.7e-05 0.0051 17.0 4.4 1 21 523 543 523 545 0.95

5 18 1.5e-05 0.0016 18.6 4.6 1 23 551 573 551 573 0.99

6 18 1.5e-05 0.0016 18.6 5.3 1 23 579 601 579 601 0.97

7 18 5.6e-06 0.0006 19.9 7.1 1 23 607 629 607 629 0.97

8 18 5.4e-08 5.8e-06 26.3 2.7 1 23 635 657 635 657 0.98

9 18 4e-05 0.0043 17.2 6.7 1 23 663 685 663 685 0.97

10 18 1.2e-05 0.0013 18.8 5.8 1 23 691 713 691 713 0.98

11 18 3.3e-07 3.5e-05 23.8 2.9 1 23 719 741 719 741 0.98

12 18 4.9e-06 0.00053 20.1 7.8 1 23 747 769 747 769 0.98

13 18 1.5e-05 0.0017 18.5 9.1 1 23 775 797 775 797 0.98

14 18 2e-05 0.0022 18.2 7.5 1 23 803 825 803 825 0.98

15 18 0.00023 0.024 14.9 8.9 1 21 831 851 831 853 0.94

16 18 7.4e-06 0.0008 19.5 0.4 1 23 859 881 859 881 0.98

17 18 0.018 1.9 8.9 4.5 1 23 891 913 891 913 0.98

18 18 2.9e-07 3.1e-05 24.0 1.3 1 23 919 941 919 941 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.8e-05	0.0062	16.7	1.4	1	23	439	461	439	461	0.96
2	18	1.8e-05	0.0019	18.4	1.3	1	20	467	486	467	489	0.94
3	18	1.9e-05	0.0021	18.2	0.7	1	23	495	517	495	517	0.98
4	18	4.7e-05	0.0051	17.0	4.4	1	21	523	543	523	545	0.95
5	18	1.5e-05	0.0016	18.6	4.6	1	23	551	573	551	573	0.99
6	18	1.5e-05	0.0016	18.6	5.3	1	23	579	601	579	601	0.97
7	18	5.6e-06	0.0006	19.9	7.1	1	23	607	629	607	629	0.97
8	18	5.4e-08	5.8e-06	26.3	2.7	1	23	635	657	635	657	0.98
9	18	4e-05	0.0043	17.2	6.7	1	23	663	685	663	685	0.97
10	18	1.2e-05	0.0013	18.8	5.8	1	23	691	713	691	713	0.98
11	18	3.3e-07	3.5e-05	23.8	2.9	1	23	719	741	719	741	0.98
12	18	4.9e-06	0.00053	20.1	7.8	1	23	747	769	747	769	0.98
13	18	1.5e-05	0.0017	18.5	9.1	1	23	775	797	775	797	0.98
14	18	2e-05	0.0022	18.2	7.5	1	23	803	825	803	825	0.98
15	18	0.00023	0.024	14.9	8.9	1	21	831	851	831	853	0.94
16	18	7.4e-06	0.0008	19.5	0.4	1	23	859	881	859	881	0.98
17	18	0.018	1.9	8.9	4.5	1	23	891	913	891	913	0.98
18	18	2.9e-07	3.1e-05	24.0	1.3	1	23	919	941	919	941	0.97

Sequence Information

Coding Sequence: atgaaTAGCGAGCAACATGCTCTGCCAGCTACTACGCAGGCACAACAAGAGGAAGTAAGTGCGGGTCAGAGTGGTCGTTCCTCATATCAAGGTGGTCTGGCAACTCCAACAAGTCTTGGCAATGTAGGAAGTAATCCGCAATCATCCGCTGACCTGCGTGTAGGTACAGCTGTAGCATTAGCGTCCTCAGTAGCTAAATACTGGGTCCTCACCAATCTCTTTCCAGGACCGATACCTCAGGTATCGGTCTACCACCACCCTCACCACAGAGTTGGTGCAGCAGGTGGTGAAGTCCAGACCACCAAAGACTCAGCAATTTTGTTGAACCAGGATATGACACTTACCTCTAGTACCCATCATCAAACGTCAACTGCACAACACCACCAGACGACAGTCAGTAGGAGTAGCCATCAAGGCTCTCTACAGACAACCACGCAGattcctGTCTCCCTACCAGGACTCAACCTTGATGGCAGCCACCTTCAAGCAAGTGTAAGCCATTTGCAAGCAGCTCATGCACAGATGCAACAGCAGTTACAAtcccaacaacaacaacagcaagcTCAAttacatcagcagcagcagcagcagcagcagcaacaacaacaacaacaagtcCAGTCTCATCATCAAATACAGAGTCATCAGAATCCTCAAAATGCGGGACAAACTAATCAGAACTCATCAAgagatgataaaattaaagacgAATCGTCCGAGCGTTGCAACGACAACCAGGTACAATCCCACGCACAGCACCAGCAGGCACAGGAATTACAACAGACTCTAatgcatcagcagcaacatcaaCAACAGATCGGTGTCGGCATCGGCGCTGCTACGAACACTGATACTGCCAATCCTGGTGGAGTGGATAAGTcggagaagaaggaagagatACGCCATTTAAATATGACTCAGTTCCAAGTTCCCGATATAAAGACAGGTGAACACATGATGGACGTCCGAACAGCAGATGGATCGATTGTTAAAATCAGCGCCGCTAGTGATCAAGATCTTGCTAAAACATTGGGTGTTGATATATCACAGTATATAAATAAgGGCGCCGTTAACGTCGAGGAACTAAACCAGATAAATCAACTACTGGCGTATCATGAAGTATTCGGCAAGCTTCAAAGTGAGATTGCGGCAGGCACGACTCTGATTGGCAGTACGGTGCCGACGCAAACAGTGACTACTATACAGAATGGTACACCGATTGCCCAACAGGTACAGCTTAATAAATTCGACGTAAAAACGAGCGATGGTGAAGCAACACCCGGACCCAGTGGTTCGCCGGCGTCTGTTGGCAGCCACGCTTGTGAGGTTTGTGGCAAGATCTTCCAATTTCGATACCAGTTGATCGTCCATCGTAGATACCACACGGAGAGAAAACCCTTCACTTGCCAGGTTTGCGGCAAGGCATTTGCTACAGCGACCGATTTGACGCGTCACGGAAAGTGTCATTTGGGTGGTTCCATGTTCACTTGCGCGGTCTGCTTTCATGTGTTCGCTAATGCCCCGTCACTAGAGCGACACATGAAACGACATGCTACGGATAAACCATACAATTGCACAGTATGCGGCAAAAGCTTTGCCAGGAAAGAACACCTCGATAACCATACCAGGTGTCACACAGGAGAGACTCCATACAGGTGTCAGTACTGTGCAAAGACTTTTACACGCAAGGAGCACATGGTGAACCATGTTCGCAAGCATACCGGGGAGACACCGCATAGGTGCGACATTTGCAAAAAGTCTTTCACGCGTAAAGAGCACTTTATGAATCACGTGATGTGGCACACAGGCGAGACTCCTCATCATTGTCAGGTCTGCGGAAAGAAGTACACCCGCAAAGAGCATCTGGCTAATCATATGCGCTCGCACACCAACGATACTCCTTTTCGTTGTGAGATTTGCGgCAAGTCATTTACTCGCAAGGAGCACTTCACGAATCACATAATGTGGCACACGGGCGAGACACCGCACCGTTGCGATTTCTGCTCTAAGACGTTCACCAGAAAGGAGCACCTGCTCAATCACGTCCGGCAGCACACGGGTGAGTCACCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCGTTCCGCTGCCAGTACTGTCCGAAAGCGTTCACGCGCAAGGACCACCTAGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACGAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAGTCGCCGCACCGCTGCCACTTCTGCTCAAAGTCTTTCACCCGCAAGGAGCATCTGACGAACCATGTCCGTATCCACACCGGCGAATCGCCGCACAGGTGTGAATTTTGTCAGCGGACATTCACCAGAAAGGAACATTTAAACAATCATCTTAGGCAGCACACCGGCGACTCGTCGCACTGCTGTAACGTCTGCAACAAACCATTCACGCGCAAGGAACATCTGATAAATCACATGCGCTGTCATACGGGCGAGCGTCCGTTTGTCTGTACGGAATGTGGCAAAAGTTTCCCGTTAAAAGGCAATTTACTTTTCCACATGCGCTCGCACAATAAGGGCAGTCAGGCGGAACGTCCCTTCCGGTGCGACCTCTGCCCCAAGGACTTTATGTGCAAGGGTCACCTGGTTTCTCACAGACGTTCCCATTCAGATGAACGGCCTCACAGTTGCCCGGACTGCGGCAAGACCTTCGTTGAAAAGGGCAACATGCTCCGGCATCTTCGCAAGCATGCGGCTGAAGGTCCACCTACGCAGGTCAGCAGCGCAGCATCGGCTCTGACGGTTGgtgccgccgcggcggcggcagcagcagcgagtagCCCAGCCGCGTTGTCGGTAATACCATCGgcagcggctgcggcggcagCTGCAGTACTCGTAGGACATCCACTGGCTCCTCCACAACAAGCGCCGCCAGCTGGCGTTGGGATTCCTCAGCACACCGTCGTCGTACCCACACCACCTGGAGTACTCGCTTCGTACTGA
Protein Sequence: MNSEQHALPATTQAQQEEVSAGQSGRSSYQGGLATPTSLGNVGSNPQSSADLRVGTAVALASSVAKYWVLTNLFPGPIPQVSVYHHPHHRVGAAGGEVQTTKDSAILLNQDMTLTSSTHHQTSTAQHHQTTVSRSSHQGSLQTTTQIPVSLPGLNLDGSHLQASVSHLQAAHAQMQQQLQSQQQQQQAQLHQQQQQQQQQQQQQQVQSHHQIQSHQNPQNAGQTNQNSSRDDKIKDESSERCNDNQVQSHAQHQQAQELQQTLMHQQQHQQQIGVGIGAATNTDTANPGGVDKSEKKEEIRHLNMTQFQVPDIKTGEHMMDVRTADGSIVKISAASDQDLAKTLGVDISQYINKGAVNVEELNQINQLLAYHEVFGKLQSEIAAGTTLIGSTVPTQTVTTIQNGTPIAQQVQLNKFDVKTSDGEATPGPSGSPASVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFATATDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCNKPFTRKEHLINHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSQAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSSAASALTVGAAAAAAAAASSPAALSVIPSAAAAAAAAVLVGHPLAPPQQAPPAGVGIPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00286639;
90% Identity: iTF_00144031;
80% Identity: -