Basic Information

Insect: Sycophaga agraensis
Gene Symbol: -
Assembly: GCA_018906755.1
Location: JACCIE010000008.1:3223571-3235136[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.1e-05 0.0077 17.0 2.2 1 23 326 348 326 348 0.97

2 18 2.7e-06 0.00035 21.2 1.9 1 20 354 373 354 376 0.94

3 18 2.2e-05 0.0028 18.4 0.7 1 23 382 404 382 404 0.98

4 18 5.3e-05 0.0068 17.2 4.4 1 21 410 430 410 432 0.95

5 18 1.6e-05 0.0021 18.8 4.6 1 23 438 460 438 460 0.99

6 18 1.6e-05 0.0021 18.8 5.3 1 23 466 488 466 488 0.97

7 18 6.2e-06 0.0008 20.1 7.1 1 23 494 516 494 516 0.97

8 18 6.1e-08 7.8e-06 26.4 2.7 1 23 522 544 522 544 0.98

9 18 4.5e-05 0.0057 17.4 6.7 1 23 550 572 550 572 0.97

10 18 1.4e-05 0.0018 19.0 5.8 1 23 578 600 578 600 0.98

11 18 3.7e-07 4.7e-05 24.0 2.9 1 23 606 628 606 628 0.98

12 18 5.5e-06 0.0007 20.3 7.8 1 23 634 656 634 656 0.98

13 18 1.7e-05 0.0022 18.7 9.1 1 23 662 684 662 684 0.98

14 18 2.3e-05 0.0029 18.3 7.5 1 23 690 712 690 712 0.98

15 18 0.00064 0.082 13.8 8.8 1 21 718 738 718 740 0.94

16 18 8.3e-06 0.0011 19.7 0.4 1 23 746 768 746 768 0.98

17 18 0.02 2.5 9.1 4.5 1 23 778 800 778 800 0.98

18 18 3.2e-07 4.1e-05 24.2 1.3 1 23 806 828 806 828 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.1e-05	0.0077	17.0	2.2	1	23	326	348	326	348	0.97
2	18	2.7e-06	0.00035	21.2	1.9	1	20	354	373	354	376	0.94
3	18	2.2e-05	0.0028	18.4	0.7	1	23	382	404	382	404	0.98
4	18	5.3e-05	0.0068	17.2	4.4	1	21	410	430	410	432	0.95
5	18	1.6e-05	0.0021	18.8	4.6	1	23	438	460	438	460	0.99
6	18	1.6e-05	0.0021	18.8	5.3	1	23	466	488	466	488	0.97
7	18	6.2e-06	0.0008	20.1	7.1	1	23	494	516	494	516	0.97
8	18	6.1e-08	7.8e-06	26.4	2.7	1	23	522	544	522	544	0.98
9	18	4.5e-05	0.0057	17.4	6.7	1	23	550	572	550	572	0.97
10	18	1.4e-05	0.0018	19.0	5.8	1	23	578	600	578	600	0.98
11	18	3.7e-07	4.7e-05	24.0	2.9	1	23	606	628	606	628	0.98
12	18	5.5e-06	0.0007	20.3	7.8	1	23	634	656	634	656	0.98
13	18	1.7e-05	0.0022	18.7	9.1	1	23	662	684	662	684	0.98
14	18	2.3e-05	0.0029	18.3	7.5	1	23	690	712	690	712	0.98
15	18	0.00064	0.082	13.8	8.8	1	21	718	738	718	740	0.94
16	18	8.3e-06	0.0011	19.7	0.4	1	23	746	768	746	768	0.98
17	18	0.02	2.5	9.1	4.5	1	23	778	800	778	800	0.98
18	18	3.2e-07	4.1e-05	24.2	1.3	1	23	806	828	806	828	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCTCTGCCAGCGACAACGCAGGCACAACAAGAGGAAGTAAACGTGGGTCAGAGTGGTCGCTCCTCATATCCAGGCAGTCTGGCTACCCCGGCAAGCCTTGGTAATGTAGGGAGCAATCCACACTCATCTGCGGACCTGCGAGTAGGTACAGCTGTAGCATTAGCCTCCTCAGTAGCAAAATACTGGGTCCTCACCAATTTCTTTCCTGGACCGATACCCCAGGTATCAGTGTACCATCATCCTCATCACAGAAGTGCAGCAGGAAGTAGTGAGGGTCAAGCAACCAAAGATACAGCAACATTGTTAAATCAAGATATGTCACTAACCTCTGGTGCTCATCATCAGACCTCTACCTCCCACCACCATCATCAACCATCTATTAGTAGGAGCAGTCATCACAGTTCATTACCATCAACACCACAGATTCCAGTCTCACTTCCTGGGATTAATTTAGATGGTAGTCAGCTTCAAGCCAGGACTTCCTCAAATACTGACAATGCTAATTCCAGTGCAGTGGAAAAAGTTGAAAAGAAAGAAGATGTTCGGCAGCTAAATATGACCCAATTTCAAGTACCTGATCTAAAGACAGGGGGTCATATGATGGATGTGCGAACAGCTGATGGATCTATTGTCAAAATTAGTGCTTCAAGTGATCAAGACCTTACAAAAACATTAGGCGTTGATATATCTCAATATATCAATAAGGGTACTGTTAATGTCGAAGAGTTAAATCAGATAAATCAATTGCTGGCATATCATGAGGTGTTTGGGAAGCTGCAGAGTGAAATAGCTGCTGGAACGACACTAATTGGTAGTACAGTCCCTACGCAAACTGTCACAACTATACAAAACGGCACACCATTAGTTCAGCAGGTGCAACTTAATAAGTTTGACATTAAGTCCAGTGACGGTGAGGCAACTCCTGGTCCGAGTGCTTCACCCGTTTCTGTTGGTAGTCATTCTTGTGAAGTCTGTGGTAAAATCTTTCAATTTCGTTATCAGTTAATAGTGCATCGCAGATACCATACAGAGAGAAAACCTTTCACGTGTCAGGTGTGCGGGAAGGCCTTTACTACTGCGAGTGATTTGACGCGCCATGGAAAATGCCATTTAGGCGGTTCTATGTTTACGTGTGCTGTGTGTTTCCACGTTTTTGCTAACGCCCCTTCATTAGAACGCCACATGAAGCGACACGCTACGGACAAACCGTACAATTGTACGGTTTGTGGAAAAAGTTTTGCAAGGAAAGAACACCTTGATAATCACACAAGATGTCATACGGGAGAGACTCCTTATAGATGCCAGTATTGTGCAAAGACATTTACGCGCAAGGAGCACATGGTAAATCACGTGCGCAAGCATACGGGTGAAACGCCTCATCGCTGCGACATCTGCAAAAAATCATTTACGCGTAAGGAGCACTTCATGAACCACGTGATGTGGCATACTGGTGAAACGCCCCATCATTGCCAGGTTTGCGGCAAAAAGTACACTAGGAAAGAGCATCTGGCGAATCACATGCGTTCGCATACTAATGATACACCGTTCCGATGCGAGATTTGCGGCAAGTCCTTCACGCGCAAGGAGCACTTCACGAATCACATAATGTGGCACACGGGCGAGACGCCGCACCGCTGCGACTTCTGCTCGAAGACCTTCACGCGGAAGGAGCACCTGCTGAATCACGTCCGACAGCACACGGGTGAGTCACCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCCTTCCGCTGCCAGTACTGTCCGAAAGCGTTTACGCGGAAGGACCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACGAAATCCTTCACGCGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAGTCGCCCCACCGCTGCCACTTCTGCTCCAAGTCCTTCACGCGGAAGGAACACCTGACGAATCACGTGCGCATCCACACCGGCGAGTCGCCCCACCGGTGCGAGTTCTGCCAGCGCACTTTCACCCGCAAGGAGCACCTGAACAACCACTTAAGGCAGCACACCGGCGACTCGTCTCACTGCTGCAACGTCTGCTCCAAGCCCTTCACGCGCAAGGAGCACCTGATCAACCACATGCGCTGCCACACGGGCGAGCGGCCGTTCGTCTGCACCGAGTGCGGCAAGAGCTTCCCCCTCAAGGGCAACCTCCTCTTCCACATGCGCTCGCACAACAAGGGCAGCCAGGCGGAGCGGCCCTTCCGCTGCGACCTCTGCCCCAAGGACTTCATGTGCAAGGGCCACCTCGTGTCCCACCGGCGCTCCCACTCGGACGAGCGGCCCCACAGCTGCCCGGACTGCGGCAAGACCTTCGTGGAGAAGGGCAACATGCTGCGGCACCTGCGCAAGCACGCGACCGAGGGCCCGCCGACGCAGGCGGCCGTCGCGGCCGCGGTGGCCGCGGGGGCCGCCGGCGGACCCGTGCTGCCCCTCCCCTCGGCGGCCGCGGCCGCCGCCGCCGCCGCGGCCGTCCTCGTCGGCCACCCCCTCGCCCCGCCGCCGCCCCCACCACCGCCGCCCTCCGCGGCCCCGGCCCCGCCCGTCGCCCTGCCCCAGCACACGGTCGTCGTGCCGACGCCCCCGGGCGTCCTGGCCTCCTACTGA
Protein Sequence: MNSEQHALPATTQAQQEEVNVGQSGRSSYPGSLATPASLGNVGSNPHSSADLRVGTAVALASSVAKYWVLTNFFPGPIPQVSVYHHPHHRSAAGSSEGQATKDTATLLNQDMSLTSGAHHQTSTSHHHHQPSISRSSHHSSLPSTPQIPVSLPGINLDGSQLQARTSSNTDNANSSAVEKVEKKEDVRQLNMTQFQVPDLKTGGHMMDVRTADGSIVKISASSDQDLTKTLGVDISQYINKGTVNVEELNQINQLLAYHEVFGKLQSEIAAGTTLIGSTVPTQTVTTIQNGTPLVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHSCEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTTASDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLINHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSQAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHATEGPPTQAAVAAAVAAGAAGGPVLPLPSAAAAAAAAAAVLVGHPLAPPPPPPPPPSAAPAPPVALPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00286639;
90% Identity: -
80% Identity: -