Basic Information

Insect: Nasonia longicornis
Gene Symbol: -
Assembly: GCA_000004795.1
Location: GL277967.1:2755322-2762418[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 9.6e-05 0.0062 16.8 1.4 1 23 435 457 435 457 0.96

2 18 2.9e-05 0.0019 18.4 1.3 1 20 463 482 463 485 0.94

3 18 3.2e-05 0.0021 18.3 0.7 1 23 491 513 491 513 0.98

4 18 7.8e-05 0.0051 17.0 4.4 1 21 519 539 519 541 0.95

5 18 2.4e-05 0.0016 18.6 4.6 1 23 547 569 547 569 0.99

6 18 2.4e-05 0.0016 18.6 5.3 1 23 575 597 575 597 0.97

7 18 9.2e-06 0.0006 20.0 7.1 1 23 603 625 603 625 0.97

8 18 9e-08 5.8e-06 26.3 2.7 1 23 631 653 631 653 0.98

9 18 6.6e-05 0.0043 17.3 6.7 1 23 659 681 659 681 0.97

10 18 2.1e-05 0.0013 18.9 5.8 1 23 687 709 687 709 0.98

11 18 5.5e-07 3.5e-05 23.8 2.9 1 23 715 737 715 737 0.98

12 18 8.1e-06 0.00052 20.1 7.8 1 23 743 765 743 765 0.98

13 18 2.6e-05 0.0017 18.6 9.1 1 23 771 793 771 793 0.98

14 18 3.3e-05 0.0022 18.2 7.5 1 23 799 821 799 821 0.98

15 18 0.00037 0.024 14.9 8.9 1 21 827 847 827 849 0.94

16 18 1.2e-05 0.00079 19.6 0.4 1 23 855 877 855 877 0.98

17 18 0.029 1.9 8.9 4.5 1 23 887 909 887 909 0.98

18 18 4.7e-07 3.1e-05 24.0 1.3 1 23 915 937 915 937 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	9.6e-05	0.0062	16.8	1.4	1	23	435	457	435	457	0.96
2	18	2.9e-05	0.0019	18.4	1.3	1	20	463	482	463	485	0.94
3	18	3.2e-05	0.0021	18.3	0.7	1	23	491	513	491	513	0.98
4	18	7.8e-05	0.0051	17.0	4.4	1	21	519	539	519	541	0.95
5	18	2.4e-05	0.0016	18.6	4.6	1	23	547	569	547	569	0.99
6	18	2.4e-05	0.0016	18.6	5.3	1	23	575	597	575	597	0.97
7	18	9.2e-06	0.0006	20.0	7.1	1	23	603	625	603	625	0.97
8	18	9e-08	5.8e-06	26.3	2.7	1	23	631	653	631	653	0.98
9	18	6.6e-05	0.0043	17.3	6.7	1	23	659	681	659	681	0.97
10	18	2.1e-05	0.0013	18.9	5.8	1	23	687	709	687	709	0.98
11	18	5.5e-07	3.5e-05	23.8	2.9	1	23	715	737	715	737	0.98
12	18	8.1e-06	0.00052	20.1	7.8	1	23	743	765	743	765	0.98
13	18	2.6e-05	0.0017	18.6	9.1	1	23	771	793	771	793	0.98
14	18	3.3e-05	0.0022	18.2	7.5	1	23	799	821	799	821	0.98
15	18	0.00037	0.024	14.9	8.9	1	21	827	847	827	849	0.94
16	18	1.2e-05	0.00079	19.6	0.4	1	23	855	877	855	877	0.98
17	18	0.029	1.9	8.9	4.5	1	23	887	909	887	909	0.98
18	18	4.7e-07	3.1e-05	24.0	1.3	1	23	915	937	915	937	0.97

Sequence Information

Coding Sequence: atgaATAGCGAGCAACATGCTCTGCCAGCGACTACGCAGGCACAACAAGAGGAAGTAAGTGCGGGTCAGAGTGGTCGTTCCACATATCAAGGTGGTCTGGCAACTCCAACAAGTCTTGGCAATGTAGGAAGTAATCCGCAATCATCCGCTGACCTGCGTGTAGGTACAGCTGTAGCGTTAGCGTCCTCAGTAGCTAAATACTGGGTCCTCACCAATCTCTTTCCAGGACCGATACCTCAGGTATCGGTCTACCACCACCCTCACCACAGAGTTGGTGCAGCAGGTGGTGAAGTCCAGACCACCAAAGACTCAGCAATTTTGTTGAACCAGGATATGACACTTACCTCTAGTACCCATCATCAAACGTCAACTGCACAACACCACCAGACGACAGTCAGTAGGAGTAGCCATCAAGGCTCCCTACAGACAACCACGCAGattccCGTTTCTCTACCAGGACTCAACCTTGATGGCAGCCACCTACAAGCAAGTGTAAGCCATTTGCAAGCAGCTCATGCACAGATGCAACAGCAGTTACAAtcccaacaacaacaacagcaagcTCAAttacatcagcagcagcagcagcagcaacaacaacaagtcCAGTCTCACCATCAAATACAGAGTCATCAGAATCCTCAAAATGCGGGACAAACTAATCAGAACTCATCAAgagatgataaaattaaagacgAATCGTCCGAGCGTTGCAACGACAACCAGGTACAATCCCACGCACAGCACCAGCAGGCACAGGAATTACAACAGACTCTAatgcatcagcagcaacatcaACAGCAGATCGGTGTCGGTATCGGCGCTGCTACGAACACCGATACTGCCAATCCTGGTGGAGTGGATAAGTcggagaagaaggaagagaTACGCCATTTAAATATGACTCAGTTCCAAGTTCCCGATATAAAGACAGGTGGACACATGATGGACGTCCGAACAGCAGATGGATCGATTGTTAAAATCAGCGCCACGAGTGATCAAGATCTTGCTAAAACATTGGGTGTTGATATATCACAGTATATAAATAAgGGCGCCGTTAACGTCGAGGAACTAAACCAGATAAATCAACTACTGGCGTATCACGAAGTATTCGGCAAGCTTCAAAGTGAGATTGCGGCAGGCACGACTCTCATTGGCAGTACGGTGCCGACGCAAACAGTGACTACTATACAGAATGGTACACCGATTGTCCAACAGGTACAGCTTAATAAATTCGACGTAAAAACGAGCGATGGTGAAGCAACACCCGGACCCAGTGGCTCGCCGGCGTCTGTTGGCAGCCACGCCTGTGAGGTTTGTGGCAAGATCTTCCAATTTCGATACCAGTTGATCGTTCATCGTAGATACCACACGGAGAGAAAACCCTTCACTTGCCAGGTTTGCGGCAAGGCATTTGCTACAGCGACCGATTTGACGCGTCACGGAAAGTGTCATTTGGGTGGTTCCATGTTCACTTGCGCGGTCTGCTTTCATGTGTTCGCTAATGCCCCGTCACTAGAGCGACACATGAAACGACATGCTACGGACAAACCATACAATTGCACAGTATGCGGCAAAAGTTTTGCCAGGAAAGAACACCTCGATAACCATACCAGGTGTCACACAGGAGAGACTCCATACAGGTGTCAGTACTGTGCAAAGACTTTTACACGCAAGGAGCACATGGTGAACCATGTTCGCAAGCATACCGGGGAGACACCGCATAGGTGCGACATTTGTAAAAAGTCTTTCACGCGTAAAGAGCACTTCATGAATCACGTGATGTGGCACACAGGCGAGACTCCTCATCATTGTCAGGTCTGCGGAAAGAAGTACACCCGCAAAGAGCATCTGGCTAATCATATGCGCTCGCACACCAACGATACTCCTTTTCGTTGTGAGATTTGCGGCAAGTCATTTACTCGCAAGGAGCACTTCACGAATCACATAATGTGGCACACGGGCGAGACACCGCACCGTTGCGATTTCTGCTCTAAGACGTTCACCAGAAAGGAGCACCTGCTCAATCACGTCCGGCAGCACACGGGTGAGTCACCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCGTTCCGCTGCCAGTACTGTCCGAAAGCGTTCACGCGCAAGGACCACCTAGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACGAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAGTCGCCGCACCGCTGCCACTTCTGCTCAAAGTCTTTCACCCGCAAGGAGCATCTGACGAACCATGTCCGTATCCACACCGGCGAATCGCCGCACAGGTGTGAATTTTGTCAGCGGACATTCACCAGAAAGGAACATTTAAACAATCATCTTAGGCAGCACACCGGCGACTCGTCGCACTGCTGTAACGTCTGCAACAAACCATTCACGCGCAAGGAACACCTGATAAATCACATGCGCTGCCACACGGGCGAGCGTCCGTTTGTCTGTACGGAATGTGGCAAAAGTTTCCCGTTAAAAGGCAATTTACTTTTCCACATGCGCTCGCACAATAAGGGCAGTCAGGCGGAACGTCCCTTCCGGTGCGACCTCTGCCCCAAGGACTTTATGTGCAAGGGTCACCTGGTTTCTCACAGACGTTCCCATTCAGATGAACGGCCTCACAGTTGCCCGGACTGCGGCAAGACCTTCGTTGAAAAGGGCAACATGCTCCGGCATCTTCGCAAGCATGCGGCTGAAGGTCCACCTACGCAGGTCAGCAGTGCAGCATCGGCTCTGACAGTTggtgccgccgcggcggcggcagcagcagcgaTACTCGTAGGACATCCACTGGCTCCTCCACAACAAGCGCCGCCAGCTGGCGTTGGGATTCCTCAGCACACCGTCGTCGTACCCACACCACCTGGAGTACTCGCTTCGTACTGA
Protein Sequence: MNSEQHALPATTQAQQEEVSAGQSGRSTYQGGLATPTSLGNVGSNPQSSADLRVGTAVALASSVAKYWVLTNLFPGPIPQVSVYHHPHHRVGAAGGEVQTTKDSAILLNQDMTLTSSTHHQTSTAQHHQTTVSRSSHQGSLQTTTQIPVSLPGLNLDGSHLQASVSHLQAAHAQMQQQLQSQQQQQQAQLHQQQQQQQQQQVQSHHQIQSHQNPQNAGQTNQNSSRDDKIKDESSERCNDNQVQSHAQHQQAQELQQTLMHQQQHQQQIGVGIGAATNTDTANPGGVDKSEKKEEIRHLNMTQFQVPDIKTGGHMMDVRTADGSIVKISATSDQDLAKTLGVDISQYINKGAVNVEELNQINQLLAYHEVFGKLQSEIAAGTTLIGSTVPTQTVTTIQNGTPIVQQVQLNKFDVKTSDGEATPGPSGSPASVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFATATDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCNKPFTRKEHLINHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSQAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSSAASALTVGAAAAAAAAAILVGHPLAPPQQAPPAGVGIPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00286639;
90% Identity: iTF_00144031;
80% Identity: -