Basic Information

Insect: Cecidostiba semifascia
Gene Symbol: -
Assembly: GCA_900474235.1
Location: UCQR01053272.1:24106-32602[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0001 0.011 16.7 1.4 1 23 436 458 436 458 0.96

2 18 1.7e-05 0.0018 19.2 1.9 1 20 464 483 464 486 0.94

3 18 3.5e-05 0.0035 18.2 0.7 1 23 492 514 492 514 0.98

4 18 8.5e-05 0.0086 17.0 4.4 1 21 520 540 520 542 0.95

5 18 2.6e-05 0.0026 18.6 4.6 1 23 548 570 548 570 0.99

6 18 2.6e-05 0.0026 18.6 5.3 1 23 576 598 576 598 0.97

7 18 1e-05 0.001 19.9 7.1 1 23 604 626 604 626 0.97

8 18 9.8e-08 9.8e-06 26.3 2.7 1 23 632 654 632 654 0.98

9 18 7.2e-05 0.0073 17.2 6.7 1 23 660 682 660 682 0.97

10 18 2.2e-05 0.0023 18.8 5.8 1 23 688 710 688 710 0.98

11 18 5.9e-07 6e-05 23.8 2.9 1 23 716 738 716 738 0.98

12 18 8.8e-06 0.00089 20.1 7.8 1 23 744 766 744 766 0.98

13 18 2.8e-05 0.0028 18.5 9.1 1 23 772 794 772 794 0.98

14 18 3.6e-05 0.0037 18.2 7.5 1 23 800 822 800 822 0.98

15 18 0.00041 0.041 14.9 8.9 1 21 828 848 828 850 0.94

16 18 1.3e-05 0.0013 19.5 0.4 1 23 856 878 856 878 0.98

17 18 0.032 3.2 8.9 4.5 1 23 888 910 888 910 0.98

18 18 5.2e-07 5.2e-05 24.0 1.3 1 23 916 938 916 938 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0001	0.011	16.7	1.4	1	23	436	458	436	458	0.96
2	18	1.7e-05	0.0018	19.2	1.9	1	20	464	483	464	486	0.94
3	18	3.5e-05	0.0035	18.2	0.7	1	23	492	514	492	514	0.98
4	18	8.5e-05	0.0086	17.0	4.4	1	21	520	540	520	542	0.95
5	18	2.6e-05	0.0026	18.6	4.6	1	23	548	570	548	570	0.99
6	18	2.6e-05	0.0026	18.6	5.3	1	23	576	598	576	598	0.97
7	18	1e-05	0.001	19.9	7.1	1	23	604	626	604	626	0.97
8	18	9.8e-08	9.8e-06	26.3	2.7	1	23	632	654	632	654	0.98
9	18	7.2e-05	0.0073	17.2	6.7	1	23	660	682	660	682	0.97
10	18	2.2e-05	0.0023	18.8	5.8	1	23	688	710	688	710	0.98
11	18	5.9e-07	6e-05	23.8	2.9	1	23	716	738	716	738	0.98
12	18	8.8e-06	0.00089	20.1	7.8	1	23	744	766	744	766	0.98
13	18	2.8e-05	0.0028	18.5	9.1	1	23	772	794	772	794	0.98
14	18	3.6e-05	0.0037	18.2	7.5	1	23	800	822	800	822	0.98
15	18	0.00041	0.041	14.9	8.9	1	21	828	848	828	850	0.94
16	18	1.3e-05	0.0013	19.5	0.4	1	23	856	878	856	878	0.98
17	18	0.032	3.2	8.9	4.5	1	23	888	910	888	910	0.98
18	18	5.2e-07	5.2e-05	24.0	1.3	1	23	916	938	916	938	0.97

Sequence Information

Coding Sequence: ATGAATAGCGAGCAGCATGCTCTGCCAGCGACGACGCAGGCACAACAAGAGGAAGTAAGTGCGGGTCAGAGTGGTCGTTCCTCATATCAAGGTGGTCTGGCAACTCCAACAAGCCTTGGCAATGTAGGAAGCAATCCGCAATCATCTGCTGACCTGCGTGTAGGTACAGCTGTAGCTTTAGCATCCTCAGTAGCTAAATACTGGGTGCTCACCAATCTCTTTCCAGGGCCGATACCTCAGGTATCGGTCTACCACCACCCTCACCACAGAGCTGGTGCAGGAGGTGGTGAAGTCCAGACCACCAAAGACTCAGCAGTATTGTTGAATCAGGATATGACGCTGACCTCTAGTACTCATCACCAAGCATCAACTGCACAACATCACCAGACAACGGTCAGTAGGAGTAGCCATCAAGGCTCACTACAGACAACTACGCAGattccTGTCTCTCTACCAGGACTCAGCCTCGATGGCAGCCACCTTCAAGCAAGTGTAAACCATTTACAAGCAGCTCATGCCCAGATGCAACAGCAAATACAATctcagcaacaacaacagcaagcTCAATTAcatcagcaacaacaacaacaacaacaacaacaacaagtcCAGTCTCACCATCAAATACAGAGTCATCAGAATGTTCAAAATTCGGGGCAGACTAATCAGAATTCATCAAgagatgataaaattaaagacGAATCGTCCGAGCGTTGCAACGACAATCAGGTACAATCTCACGCTCAGCACCAGCAGGCACAGGAATTACAGCAGACCCTaatgcatcagcagcaacatcaACAGCAGATGGGTGTCGGTATTGGTGCTGCTAGTAACACTGATACTGCTAATCCTGGTGGTGTGGAAAAGGttgagaagaaagaagagataCGCCATTTAAATATGACTCAGTTTCAAGTACCCGATCTAAAAACAGGCGGTCACATGATGGACGTCCGAACAGCAGATGGGTCGATTGTTAAAATCAGCGCCGCGAGTGATCAAGATTTTGCAAAAACTTTGGGTGTTGATATATCACAGTATATCAATAAGGGGACCGTTAACGTAGAAGATTTAAACCAGATAAATCAACTACTGGCGTATCACGAAGTATTCGGCAAGTTACAAAGTGAGATTGCGGCAGGCACGACGCTGATCGGTAGCACGGTGCCGACGCAGACGGTGACAACCATACAGAACGGCACACCGATTGTGCAACAGGTGCAGCTTAACAAATTCGATATAAAAACGAGCGATGGTGAAGCAACACCCGGACCCAGTGCCTCGCCGGTGTCTGTTGGCAGCCACGCCTGTGAGGTTTGTGGCAAGATCTTCCAGTTTCGATATCAGCTGATCGTCCATCGTAGATACCACACGGAGAGAAAACCCTTCACTTGTCAGgTTTGCGGCAAGGCATTTACCACAGCGACCGATTTAACACGTCATGGAAAATGCCACTTGGGTGGTTCCATGTTCACGTGTGCGGTTTGCTTTCATGTTTTTGCTAATGCCCCGTCTCTAGAACGTCACATGAAACGGCACGCTACAGACAAACCGTACAATTGCACGGTATGCGGCAAAAGCTTTGCAAGAAAAGAGCACCTTGACAACCATACTAGGTGTCACACGGGAGAAACTCCATACAGatgTCAGTACTGTGCAAAGACTTTTACACGTAAGGAGCATATGGTGAACCATGTGCGCAAGCACACGGGGGAGACACCGCATCGGTGTGACATCTGCAAAAAGTCATTCACGCGTAAGGAGCACTTCATGAATCACGTGATGTGGCACACAGGCGAGACACCTCATCATTGTCAGGTTTGCGGAAAGAAGTATACCCGCAAGGAGCACTTGGCTAATCATATGCGTTCGCACACCAACGATACTCCTTTCCGTTGTGAAATCTGCGgcAAGTCATTTACTCGCAAGGAGCACTTCACGAATCACATAATGTGGCACACGGGCGAGACACCGCACCGTTGCGATTTTTGCTCTAAGACGTTCACCAGAAAGGAGCACCTGCTCAATCACGTCCGGCAGCACACGGGTGAGTCACCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCGTTCCGCTGCCAGTACTGTCCGAAAGCGTTCACGCGCAAGGACCACCTAGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACGAAATCATTCACGCGGAAGGAACATTTGACAAATCACGTGCGTCAACATACAGGCGAGTCGCCGCACCGCTGCCACTTCTGCTCAAAGTCTTTCACCCGCAAGGAGCATCTGACGAATCATGTCCGCATCCACACCGGCGAATCGCCGCACAGGTGTGAATTCTGTCAGCGAACCTTCACCAGAAAGGAACACTTAAACAATCATCTCAGGCAGCACACCGGCGACTCGTCGCACTGCTGTAACGTCTGCAACAAACCATTCACACGCAAGgAGCACCTGATAAATCACATGCGCTGTCACACGGGCGAGCGCCCATTCGTCTGTACGGAATGCGGCAAGAGTTTCCCGTTAAAAGGCAATTTACTTTTCCACATGCGCTCCCACAATAAGGGCAGTCAGGCGGAGCGTCCGTTCCGCTGCGACCTCTGTCCCAAGGACTTCATGTGTAAGGGTCACCTGGTTTCTCACAGACGTTCTCATTCAGATGAGCGGCCTCACAGTTGCCCAGACTGCGGCAAGACCTTCGTCGAGAAGGGTAATATGCTCCGGCATCTTCGCAAGCATGCGGCTGAAGGTCCGCCTACACAGGTCAGCAGTGCAGCATCGGCCCTGACAGTTGGAGCcgctgcagcggcagcagcagcagcgagtagTCCAGCCGCATTGTCGGTGATACCATCGGCAGCGGCTGCGGCGGCAGCTGCGGTACTCGTAGGACATCCACTGGCTCCTCCACCACAGGCGCCGCCGGCCGGCGTCGGGATACCCCAGCACACTGTCGTGGTACCCACGCCACCCGGAGTGCTCACTTCGTACTGA
Protein Sequence: MNSEQHALPATTQAQQEEVSAGQSGRSSYQGGLATPTSLGNVGSNPQSSADLRVGTAVALASSVAKYWVLTNLFPGPIPQVSVYHHPHHRAGAGGGEVQTTKDSAVLLNQDMTLTSSTHHQASTAQHHQTTVSRSSHQGSLQTTTQIPVSLPGLSLDGSHLQASVNHLQAAHAQMQQQIQSQQQQQQAQLHQQQQQQQQQQQVQSHHQIQSHQNVQNSGQTNQNSSRDDKIKDESSERCNDNQVQSHAQHQQAQELQQTLMHQQQHQQQMGVGIGAASNTDTANPGGVEKVEKKEEIRHLNMTQFQVPDLKTGGHMMDVRTADGSIVKISAASDQDFAKTLGVDISQYINKGTVNVEDLNQINQLLAYHEVFGKLQSEIAAGTTLIGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTTATDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCNKPFTRKEHLINHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSQAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSSAASALTVGAAAAAAAAASSPAALSVIPSAAAAAAAAVLVGHPLAPPPQAPPAGVGIPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00286639;
90% Identity: iTF_00144031;
80% Identity: -