Basic Information

Insect: Apocrypta bakeri
Gene Symbol: -
Assembly: GCA_018906985.1
Location: JACCIA010000001.1:5477916-5486086[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 8.6e-05 0.0062 16.7 1.4 1 23 430 452 430 452 0.96

2 18 1.4e-05 0.001 19.2 1.9 1 20 458 477 458 480 0.94

3 18 2.8e-05 0.002 18.2 0.7 1 23 486 508 486 508 0.98

4 18 7e-05 0.005 17.0 4.4 1 21 514 534 514 536 0.95

5 18 5.1e-05 0.0036 17.5 4.8 1 23 542 564 542 564 0.99

6 18 2.1e-05 0.0015 18.6 5.3 1 23 570 592 570 592 0.97

7 18 8.2e-06 0.00059 19.9 7.1 1 23 598 620 598 620 0.97

8 18 8e-08 5.7e-06 26.3 2.7 1 23 626 648 626 648 0.98

9 18 5.9e-05 0.0042 17.2 6.7 1 23 654 676 654 676 0.97

10 18 1.8e-05 0.0013 18.8 5.8 1 23 682 704 682 704 0.98

11 18 4.9e-07 3.5e-05 23.8 2.9 1 23 710 732 710 732 0.98

12 18 7.2e-06 0.00052 20.1 7.8 1 23 738 760 738 760 0.98

13 18 2.3e-05 0.0016 18.5 9.1 1 23 766 788 766 788 0.98

14 18 3e-05 0.0021 18.2 7.5 1 23 794 816 794 816 0.98

15 18 0.00033 0.024 14.9 8.9 1 21 822 842 822 844 0.94

16 18 1.1e-05 0.00079 19.5 0.4 1 23 850 872 850 872 0.98

17 18 0.026 1.9 8.9 4.5 1 23 882 904 882 904 0.98

18 18 4.2e-07 3e-05 24.0 1.3 1 23 910 932 910 932 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	8.6e-05	0.0062	16.7	1.4	1	23	430	452	430	452	0.96
2	18	1.4e-05	0.001	19.2	1.9	1	20	458	477	458	480	0.94
3	18	2.8e-05	0.002	18.2	0.7	1	23	486	508	486	508	0.98
4	18	7e-05	0.005	17.0	4.4	1	21	514	534	514	536	0.95
5	18	5.1e-05	0.0036	17.5	4.8	1	23	542	564	542	564	0.99
6	18	2.1e-05	0.0015	18.6	5.3	1	23	570	592	570	592	0.97
7	18	8.2e-06	0.00059	19.9	7.1	1	23	598	620	598	620	0.97
8	18	8e-08	5.7e-06	26.3	2.7	1	23	626	648	626	648	0.98
9	18	5.9e-05	0.0042	17.2	6.7	1	23	654	676	654	676	0.97
10	18	1.8e-05	0.0013	18.8	5.8	1	23	682	704	682	704	0.98
11	18	4.9e-07	3.5e-05	23.8	2.9	1	23	710	732	710	732	0.98
12	18	7.2e-06	0.00052	20.1	7.8	1	23	738	760	738	760	0.98
13	18	2.3e-05	0.0016	18.5	9.1	1	23	766	788	766	788	0.98
14	18	3e-05	0.0021	18.2	7.5	1	23	794	816	794	816	0.98
15	18	0.00033	0.024	14.9	8.9	1	21	822	842	822	844	0.94
16	18	1.1e-05	0.00079	19.5	0.4	1	23	850	872	850	872	0.98
17	18	0.026	1.9	8.9	4.5	1	23	882	904	882	904	0.98
18	18	4.2e-07	3e-05	24.0	1.3	1	23	910	932	910	932	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCTCTGCCAGCGACAACGCAGGCACAACAAGAGGAAGTAAGTGCGGGTCAAAGTGGTCGTTCCTCATATCAAGGTGGTCTGGCAATCCCATCAAGCCATGGCAATGCAGGAAGCAATACAAATTCATCCACTGACCTGCGTGTTGGTACAGCTGTAGCCTTAGCATCTTCAGTAGCTAAATACTGGGTCCTCACCAATCTTTTTCAAGGGCCGATACCACAAGTATCGGTCTATCACCATCCTCACCATAGAGCTGGTGTAGGGGGTGGTGAAGTCCAGACCACCAAAGACTCAGCAGTATTGTTGAATCAGGATATGGCACTGACCTCTGGTACTCATCATCAGACATCAACTGTACAACCTCTTCAGGCTACAGTCGGTAGGGCTGGCCATCAAAGTTCCTTACAGACATCTGCGCAGATTCCTGTCTCTCTACCAGGACTTAGTCTTGATGGCAGCCATCTTCAAGCTAGTGTGAGTCATTTGCAAGCAGCCCATGCACAGATGCAACAGCAAATGCAAACACAACAACAAGCCCAATTACATCAGCAGCAGCAGCAACAACAAGCCCAATCTCATCATCAAATACAGAGTATTCAAAATGCTCAAAATGCAGGACAAACCAATCAGAACTCTACAAGGGATGATAAATGTAAAGAGGAATCATCTGAGCGATGCAATGATAGCCAGGTTCAATCTCATACTCAGCACCAACAAGCTCAAGATTTGCAACAGACCTTAATGCATCAGCAACAACATCAACAACAAATTAGTATTGGTATCGGTGCTACTACCAATACGGATAATTCTAATAATCCTGGTGGAGCAGAAAAGATTGAGAAGAAGGAAGAAATACGTCATTTAAATATGACTCAGTTTCAAGTTCCCGACTTAAAAGCGGGCAGTCACATGATGGATGTTCGTACGGCAGATGGATCTATTGTTAAAATAAGCGCTGCAAGTGATCAAGATCTTGCAAAAACATTGGGCGTTGATATATCACAGTATATTAATAAGGGAACAGTAAACGTTGAAGAACTAAATCAGATAAACCAATTACTGGCTTACCATGAGGTATTCGGTAAACTCCAGAGTGAAATTGCAGCGGGAACAACTTTGATTGGTAGCACGGTACCAACACAAACGGTGACAACTATACAGAATGGTACACCGATTGTCCAACAAGTTCAGCTTAACAAATTTGATATAAAATCTAGTGATGGTGAGGCAACACCAGGACCGAGCGGTTCTCCAGTATCGGTTGGCAGTCATGCCTGTGAGGTTTGCGGCAAGATCTTCCAATTTCGATATCAGCTTATCGTCCATCGTAGATATCATACGGAGAGAAAACCATTCACGTGCCAGGTGTGTGGCAAGGCATTCACTACAGCTACCGATTTAACACGTCATGGGAAATGTCACTTAGGTGGTTCAATGTTCACGTGTGCAGTTTGTTTTCATGTTTTCGCTAATGCTCCGTCATTAGAACGGCATATGAAACGGCATGCAACTGATAAACCGTACAATTGTACAGTGTGCGGTAAAAGTTTCGCGAGGAAAGAGCATCTCGATAACCATACTAGGTGTCATACTGGAGAGACTCCATACAGGTGTCAGTACTGCGCAAAAACTTTCACTCGTAAGGAACACATGGTGAATCATGAGCGCAAACACACCGGAGAAACACCGCATCGGTGTGACATTTGTAAAAAGTCTTTTACGCGCAAAGAGCATTTTATGAATCATGTGATGTGGCATACTGGTGAAACACCTCATCATTGTCAGGTTTGCGGAAAGAAATATACTCGGAAAGAGCATTTGGCTAATCACATGCGCTCGCACACCAACGATACCCCCTTCCGTTGTGAAATTTGCGGTAAGTCATTTACGCGCAAGGAGCACTTCACGAATCACATAATGTGGCATACTGGAGAGACACCACATCGCTGCGATTTCTGTTCTAAGACCTTCACGAGAAAGGAACATCTACTCAATCACGTTCGGCAGCACACGGGTGAGTCACCACACCGATGCGGCTTCTGCTCCAAATCATTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCATTCCGCTGCCAGTACTGTCCGAAAGCGTTCACGCGCAAGGATCACTTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACGAAATCATTCACACGGAAGGAACATTTGACAAACCACGTACGTCAACATACAGGCGAGTCGCCGCACCGCTGTCATTTCTGCTCGAAGTCTTTTACCCGTAAGGAGCATCTGACGAATCACGTACGCATTCACACTGGTGAATCACCTCACAGGTGTGAATTCTGTCAACGTACTTTCACAAGGAAAGAACATCTAAATAATCATCTCAGGCAGCACACCGGCGACTCGTCGCACTGCTGTAACGTCTGTAACAAACCATTTACACGCAAGGAACACCTTATAAACCACATGCGCTGTCACACAGGCGAGCGCCCATTTGTTTGCACAGAATGTGGCAAAAGTTTCCCATTAAAAGGCAATTTGCTTTTCCATATGCGATCGCACAACAAGGGTAGTCAAGCCGAACGTCCTTTCCGTTGTGACCTTTGTCCTAAGGACTTTATGTGTAAGGGTCATTTGGTCTCTCACCGACGTTCTCATTCGGACGAGCGGCCTCATAGTTGCCCGGATTGCGGCAAGACTTTCGTTGAAAAGGGTAACATGCTCCGACATCTCCGGAAACATGCGTCTGAAGGTCCACCAACGCAGGTCAGCAGTGCAGCTTCAGCTCTGACGGTAGGAGCCGCCGCAGCGGCAGCAGCAGCAGCCGCTAGTAGTCCATCCGCATTATCAGTGATACCTAGTGCGGCAGCTGCCGCGGCAGCTGCGGTACTAGTGGGACATCCACTAGCTCCGCCACAGCAAGCTGCATCGGCCGGTGTTGGACTACCGCCCCATACCGTAGTCGTACCTACGCCTCCTGGAGTATTAGCATCATACTAA
Protein Sequence: MNSEQHALPATTQAQQEEVSAGQSGRSSYQGGLAIPSSHGNAGSNTNSSTDLRVGTAVALASSVAKYWVLTNLFQGPIPQVSVYHHPHHRAGVGGGEVQTTKDSAVLLNQDMALTSGTHHQTSTVQPLQATVGRAGHQSSLQTSAQIPVSLPGLSLDGSHLQASVSHLQAAHAQMQQQMQTQQQAQLHQQQQQQQAQSHHQIQSIQNAQNAGQTNQNSTRDDKCKEESSERCNDSQVQSHTQHQQAQDLQQTLMHQQQHQQQISIGIGATTNTDNSNNPGGAEKIEKKEEIRHLNMTQFQVPDLKAGSHMMDVRTADGSIVKISAASDQDLAKTLGVDISQYINKGTVNVEELNQINQLLAYHEVFGKLQSEIAAGTTLIGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSGSPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTTATDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHERKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCNKPFTRKEHLINHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSQAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHASEGPPTQVSSAASALTVGAAAAAAAAAASSPSALSVIPSAAAAAAAAVLVGHPLAPPQQAASAGVGLPPHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00286639;
90% Identity: iTF_00287476; iTF_00309665; iTF_01037249; iTF_01487233; iTF_01036453; iTF_00286639;
80% Identity: -