Bsor009421.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus soroeensis
Gene Symbol
-
Assembly
GCA_014737365.1
Location
JACXIL010000213.1:886483-890154[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.13 12 6.7 2.3 1 23 196 218 196 218 0.94
2 18 0.00031 0.029 14.9 1.4 2 23 253 274 252 274 0.98
3 18 0.0016 0.15 12.7 0.7 1 23 417 439 417 439 0.96
4 18 0.0017 0.16 12.6 0.3 2 23 443 464 442 464 0.96
5 18 0.022 2 9.1 2.9 1 23 537 560 537 560 0.95
6 18 0.00035 0.033 14.8 0.7 1 21 566 586 566 590 0.92
7 18 0.0013 0.12 13.0 2.9 2 23 669 690 668 690 0.95
8 18 2.3e-05 0.0021 18.5 4.1 1 23 746 768 746 768 0.97
9 18 0.00023 0.022 15.3 0.7 1 20 773 792 773 794 0.94
10 18 0.039 3.7 8.3 0.6 2 23 805 826 805 826 0.97
11 18 2.4e-05 0.0022 18.4 0.6 2 23 865 886 864 886 0.97
12 18 2.1e-05 0.002 18.6 1.6 1 23 891 913 891 913 0.95
13 18 0.00012 0.011 16.2 2.9 1 23 919 941 919 941 0.98
14 18 3.8e-06 0.00035 20.9 0.4 1 23 957 979 957 979 0.95
15 18 3.1e-07 2.9e-05 24.4 0.6 1 23 985 1007 985 1007 0.99
16 18 1.9e-05 0.0017 18.8 0.2 1 23 1013 1035 1013 1035 0.98
17 18 0.00012 0.012 16.2 4.1 1 23 1041 1063 1041 1063 0.96
18 18 0.0081 0.75 10.5 0.3 1 20 1069 1088 1069 1090 0.89

Sequence Information

Coding Sequence
ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTGCCTTGAAAATATTTCAACGGTAGAACACGATTATATATTACAGCAAGAATGTATATTATCTAGCACGAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTCCGGAGAATCGTTTCAGCGGGAGGATTGCACCGAGTACGTAGATCTACTGGTAAAAGCAGCTGATGCAACGACAAAACAAGAAGATGAGGAGGAAGATGGAGAAGAAGAAAAATCGGATATTACGAACACGGTTGTTCAGCCAGATGCAGATTCTCAGTGTCAAAATGAAATGAGGAGAAGCAAACGTAAATTAGTTCGGCGAAATTTTGAAACAAGACGAGATTCCGACGAGGAAAACTATTTTGAAAATTTGAATTTAAGCTCGAGACTGAAAAAAGATCAGTCCTCTGATCAATCCGAAAAAATTTTTCTATGTTATCTGTGCGACAAAGAGTTTTTATCGAAGAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAAAACACCGGATACACCGCAAAAGAACGTTTATAATGTTGCAAAGTCTCCTCCATCAGGTAAGAGATCAAACAAGTGCCCGTATTGTGGCAAGCAATACATATATATAACTTCGTTTAGTAAACATTTGAAAAAACATGAAAGGGAGAAAGAAGAGGGCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGTCTAGATCTTGATAATTATAAAGATGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGTGGGTCCAGAAGAGCATAGAGAGGAAGAAAGAGGGAACGAGGCAAAAAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGTAATTTGATTAAAAAAGAGGAACAGGAGAATCGCAATGTCCGTACAGAAACGTTTGCATGCGATAAGTGCGCAGAAAAATTTTATACAAAACGTGGCTTACAAAAACATGAGATTTCGCATGTTGTTCTCAGCTGCAGCATATGCGAAGAAGAATTCGATTCACTGGAAAAATTAAGAAACCACCGCGCGAAACACGTGGTTGAAGGTGTTCTGACTGAACAAGAACTTGAGATGGATACAGAATATGCAATTAATAAGGAAACATGTGATTACGAGACAGAGGATAAAGATAGCGTAGACAGGAATCACAGGACGGAAAACAAATCAATACCAGGATCACTGGAAACAGAAAATAATTTATCGAAGAAAAATGATAGAAACATGGAGACCCATCGTCATTCGGGTATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAGAAACACATGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACAATGTAACAAAACATTTGGTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTCCTTCATGGGCAAGAATATGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACAAAAAATTATCGATAAAATTAAAACCGAGGATGGTTTGGAAGATTTCGACGAGGAAGAGGAGAATATCGATAGAATTAATCGCGCTAATGTTACAGATAACAATTATAGTCGGAATAAGCGAGAAATATCCTCGCATAAGAGGCATAATCATAAGAAAGAATTGGAATGTGCTAGTTGCAATAAAAGATGCAGTTCAAAGCAATTGTTAACAAAACATATGGAACAACATGTAAAAGACGAGCAACGAGTGGTCAAATCGGAAAAGCAAAAACAACCGGTAGATAAGAAAGATTGGCAAAGGGACTACGCTAATGAGGAGATATACCACAAAGAGAATAGAGATGACGATTATGATTCGGATTTCGAAAGTGGTTTAGATTGGCCAATGGATAATCATGAGTGTCCAAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGTTACGTCATCAATTGTTGCACGAAGAACCGAATTTCGAATGCGATATTTGCAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAAAACCCCGATCAAGTGAGAAAGTGCAATATATGCGGAGACACGTTTGAGAACAACGAGATTCTGCGAGAACATAGATCGAAACATGTTACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAGCCGCGACCCGAGGAGAAAAAGCCAGGTGAAAAGATTGGTAGGAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCACGAAGGGAAAAAGTATTTATGTGATATATGTCCAAAAAAATTTTATAGAAGGGAACATTTAAAGATACATGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACACGATGTACAAAGCGTTTCATTAAAGAGGAACAGTTGACAAATCACCTGTCAAAGCATGACCGAACTTTCAAGAAGAATAAAGAAACAGACAGCTCGAAAAGATTCCTTTGCGAAATCTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGTGAAGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTGAAAATGCACATGAGAACACATACGCAGGAACGACCGTATGTTTGTCAATATTGTTCACGAGCGTTTGCTAGAGCCGATACGCTTGCTAATCATTTGACATCGCATACAGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAATCGCTCAAAGAACACGTCTTTATTCATACTGGTCAAAGACCTTATGCTTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAAAATCGTGCTCAAACACTAACCGCGCAAGTACAGGCTACGCCTCAAAATCAACAAAGAGTGCTACAGCAGACTACTCTTGAACAAGGACAAATAGTAAAGGCACAAAATATTAAAACCATTACTATCACTAAACCTGAATCAGTCGCCACTCAACAAACAGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTTGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACATCATAA
Protein Sequence
MEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSTNXXXXXXXXXXXXXXXXXXXXPSGESFQREDCTEYVDLLVKAADATTKQEDEEEDGEEEKSDITNTVVQPDADSQCQNEMRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKDQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKVKQKEVGPEEHREEERGNEAKRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGNLIKKEEQENRNVRTETFACDKCAEKFYTKRGLQKHEISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYAINKETCDYETEDKDSVDRNHRTENKSIPGSLETENNLSKKNDRNMETHRHSGIDYSCKVCCQRFAMKEMLQKHMEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRANVTDNNYSRNKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQRVVKSEKQKQPVDKKDWQRDYANEEIYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQATPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS