Bpyr013684.1
Basic Information
- Insect
- Bombus pyrosoma
- Gene Symbol
- -
- Assembly
- GCA_014825855.1
- Location
- CM026134.1:9195816-9201887[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 12 6.7 2.3 1 23 196 218 196 218 0.94 2 18 0.00031 0.03 14.9 1.4 2 23 253 274 252 274 0.98 3 18 0.00039 0.037 14.6 1.0 1 23 418 440 418 440 0.96 4 18 0.0017 0.17 12.6 0.3 2 23 444 465 443 465 0.96 5 18 0.17 16 6.3 3.2 1 23 538 561 538 561 0.94 6 18 0.00035 0.034 14.8 0.7 1 21 567 587 567 591 0.92 7 18 0.0013 0.12 13.0 2.9 2 23 670 691 669 691 0.95 8 18 2.3e-05 0.0022 18.5 4.1 1 23 748 770 748 770 0.97 9 18 0.00023 0.022 15.3 0.7 1 20 775 794 775 796 0.94 10 18 0.039 3.8 8.3 0.6 2 23 807 828 807 828 0.97 11 18 2.4e-05 0.0023 18.4 0.6 2 23 867 888 866 888 0.97 12 18 2.2e-05 0.0021 18.6 1.6 1 23 893 915 893 915 0.95 13 18 0.00012 0.012 16.2 2.9 1 23 921 943 921 943 0.98 14 18 3.8e-06 0.00036 20.9 0.4 1 23 959 981 959 981 0.95 15 18 3.1e-07 3e-05 24.4 0.6 1 23 987 1009 987 1009 0.99 16 18 1.9e-05 0.0018 18.8 0.2 1 23 1015 1037 1015 1037 0.98 17 18 0.00012 0.012 16.2 4.1 1 23 1043 1065 1043 1065 0.96 18 18 0.0081 0.78 10.5 0.3 1 20 1071 1090 1071 1092 0.89
Sequence Information
- Coding Sequence
- ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTGCCTTGAAAATATTTCAACGGTAGAACACGATTATATATTACAGCAAGAATGTATATTATCTAGCACGAATGAACAGGAACAGCAACAACAGCATCATCATCATCAACAACATCAACATCAACATCAACATCCCTCCGGAGAATCGTTTCAGCGGGAGGATTGCACCGAGTACGTAGATCTATTGGTAAAAGCAGCTGATGCAACGACAAAACAAGAAGATGAGGACGAAGATGAAGAAGAAGAAAAATCGGATATTACGAACACGGTTGTTCAGCCAGATGCAAATCCTCAGTGTCAAAATGAAACGAGGAGAAGCAAACGTAAATTAGTTCGGCGAAATCTTGAAACGAGACGAGATTCCGATGAGGAAAACTATTTTGAAAATTTGAATTTAAGCTCGAGACTGAAAAAAGGTCAGTCCTCTGATCAATCGGAAAAAATTTTTCTATGTTATCTGTGCGACAAAGAGTTTTTGTCGAAGAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAAAACACCGGATACACCGCAAAAGAACGTTTATAATGTCGCAAAGTCTCCTCCATCGGGTAAAAGATCAAACAAGTGCCCGTATTGTGGCAAGCAATACATATATATAACCTCGTTTAGTAAACATTTGAAAAAACATGAAAGGGAGAAAGAAGAGGGCAAGGAAGACTCAATGCCCTTAGAAATATCATTCCATGAAGACGAACATAGTCTAGATCTTGATAATTATAAAGATGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAGAAAGAGGTGGGTCCTGAAGAGCATAGAGAGGAAGAAAGAGGGAACGAGGCGAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGTAATTTGATTAAAAAAGAGGAACAAGAGAATCGCAATGTTCGTACAGAAACGTTTGCATGCGACAAGTGCACAGAGAAATTTTATACAAAACGTGGCTTACAAAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGAAGAATTCGATTCACTGGAAAAATTAAGAAACCATCGCGCGAAACACGTGGTTGAAGGTGTTTTAACTGAACAAGAACTTGAGATGGATACAGAATATCCAATTAATAAGGAAACGTGTGATTACGAGACAGAGGATAAAGATAGCATAGACAGGAATCACAGGGTGGAAAACAAATCAATACCAGGATTGCAGGAAACAGAAAATAATTTATCGAAGAAAAATGATAGAAACATGGAGACCCATCGTCATTCGGGGATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAAAAACACACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACAATGTAACAAAACATTTGGTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTCCTTCATGGGCAAGAATACGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACAAAAAATTATCGATAAAATTAAAACCGAGGATGGTTTGGAAGATTTCGACGAAGAAGAGGAGAATATCGATAGAGTTAATCGCGCTAATGTTACAGATAATAATTATAGTCGGAATAAGCGAGAAGTATCCTCCCATAAGAGACATAATCATAAGAAAGAATTGGAATGTGCGAGTTGCAATAAAAGATGCAGTTCGAAGCAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTGGCCAAGTCGGAAAAGCAAAAGCAATCGGCAGATAAGAAGGATTGGCAAAGGGACTACGCTAATGAGGAGATGTACCATAAAGAGAATAGAGATGACGATTATGATTCGGATTTTGAAAGTGGTTTGGATTGGCCAATGGATAATCACGAGTGCCCAAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGTTACGTCATCAATTGTTGCACGAAGAACCGAATTTCGAATGCGATATTTGCAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCGAAACATGTTACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAACCAGGTGAAAAGATTGGTAGGAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCACGAAGGAAAAAAATATCTGTGTGATATATGTCCAAAAAAATTTTATAGAAGGGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAGGAACAGTTGACAAATCATTTGTCAAAGCATGACCGAACTTTTAAGAAGAATAAAGAAACAGACAGCTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGAAGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTGAAAATGCACATGAGAACGCATACGCAAGAACGACCGTATGTTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACCCTTGCTAATCATTTGACTTCGCATACAGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAGTCGCTCAAAGAGCATGTCTTCATTCATACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAAAATCGTGCTCAAACACTAACCGCGCAAGTACAGGCTACGCCTCAAAATCAACAAAGAGTGCTACAACAGACCACTCTTGAACAAGGACAAATAGTAAAGGCACAAAATATTAAAACCATTACTATCACTAAGCCTGAATCAGTCGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACATCATAA
- Protein Sequence
- MEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSTNEQEQQQQHHHHQQHQHQHQHPSGESFQREDCTEYVDLLVKAADATTKQEDEDEDEEEEKSDITNTVVQPDANPQCQNETRRSKRKLVRRNLETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEDSMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKVKQKEVGPEEHREEERGNEAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGNLIKKEEQENRNVRTETFACDKCTEKFYTKRGLQKHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYPINKETCDYETEDKDSIDRNHRVENKSIPGLQETENNLSKKNDRNMETHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRVNRANVTDNNYSRNKREVSSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVAKSEKQKQSADKKDWQRDYANEEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQATPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215850;
- 90% Identity
- iTF_00229494;
- 80% Identity
- -