Basic Information

Insect: Bombus terrestris
Gene Symbol: -
Assembly: GCA_000214255.1
Location: NC:1588355-1594076[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.1 6.2 6.7 2.3 1 23 216 238 216 238 0.94

2 18 0.00024 0.015 14.9 1.4 2 23 273 294 272 294 0.98

3 18 0.0011 0.066 12.9 0.6 1 23 428 450 428 450 0.96

4 18 0.0013 0.082 12.6 0.3 2 23 454 475 453 475 0.96

5 18 0.13 8 6.3 3.2 1 23 548 571 548 571 0.94

6 18 0.00027 0.017 14.7 0.7 1 21 577 597 577 601 0.92

7 18 0.001 0.061 13.0 2.9 2 23 680 701 679 701 0.95

8 18 2.1e-05 0.0013 18.3 3.7 1 23 758 780 758 780 0.97

9 18 0.00018 0.011 15.3 0.7 1 20 785 804 785 806 0.94

10 18 0.031 1.9 8.3 0.6 2 23 817 838 817 838 0.97

11 18 1.9e-05 0.0011 18.4 0.6 2 23 877 898 876 898 0.97

12 18 1.7e-05 0.001 18.6 1.6 1 23 903 925 903 925 0.95

13 18 9.4e-05 0.0058 16.2 2.9 1 23 931 953 931 953 0.98

14 18 3e-06 0.00018 20.9 0.4 1 23 969 991 969 991 0.95

15 18 2.4e-07 1.5e-05 24.3 0.6 1 23 997 1019 997 1019 0.99

16 18 1.5e-05 0.00089 18.7 0.2 1 23 1025 1047 1025 1047 0.98

17 18 9.7e-05 0.0059 16.2 4.1 1 23 1053 1075 1053 1075 0.96

18 18 0.0063 0.39 10.4 0.3 1 20 1081 1100 1081 1102 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.1	6.2	6.7	2.3	1	23	216	238	216	238	0.94
2	18	0.00024	0.015	14.9	1.4	2	23	273	294	272	294	0.98
3	18	0.0011	0.066	12.9	0.6	1	23	428	450	428	450	0.96
4	18	0.0013	0.082	12.6	0.3	2	23	454	475	453	475	0.96
5	18	0.13	8	6.3	3.2	1	23	548	571	548	571	0.94
6	18	0.00027	0.017	14.7	0.7	1	21	577	597	577	601	0.92
7	18	0.001	0.061	13.0	2.9	2	23	680	701	679	701	0.95
8	18	2.1e-05	0.0013	18.3	3.7	1	23	758	780	758	780	0.97
9	18	0.00018	0.011	15.3	0.7	1	20	785	804	785	806	0.94
10	18	0.031	1.9	8.3	0.6	2	23	817	838	817	838	0.97
11	18	1.9e-05	0.0011	18.4	0.6	2	23	877	898	876	898	0.97
12	18	1.7e-05	0.001	18.6	1.6	1	23	903	925	903	925	0.95
13	18	9.4e-05	0.0058	16.2	2.9	1	23	931	953	931	953	0.98
14	18	3e-06	0.00018	20.9	0.4	1	23	969	991	969	991	0.95
15	18	2.4e-07	1.5e-05	24.3	0.6	1	23	997	1019	997	1019	0.99
16	18	1.5e-05	0.00089	18.7	0.2	1	23	1025	1047	1025	1047	0.98
17	18	9.7e-05	0.0059	16.2	4.1	1	23	1053	1075	1053	1075	0.96
18	18	0.0063	0.39	10.4	0.3	1	20	1081	1100	1081	1102	0.89

Sequence Information

Coding Sequence: atgaacaaaaagtGTCACATGTTAGCAAAGAACTCGAACGCGGTAATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACgaagaaatgttaaaacacGAAAACGGGGATAACGATTgccttgaaaatatttcaacggtAGAACACGATTATATATTGCAGCAAGAATGTATATTATCTAGCACGAATGAGCAGgagcagcaacaacagcagcagcatcATCATCAACAACATCAACATCAACATCAACATCAACATCAACATCCCTCCGGAGAATCGTTTCAGCGAGAGGATTGCACCGAATACGTAGATCTATTGGTAAAAGCAGCTGATGCAACGACAAAACAAGAAGATGAGgaggaagatgaagaagaagaaaaatcggataTTACGAACACGGTTGTTCAGCCAGATGCAGATTCTCAGTGTCAaaatgaaacgagaagaaGCAAACGTAAATTAGTTCGgcgaaattttgaaacgagaCGAGATTCCGACGAGGAAaactattttgaaaatttgaatttaagcTCGAGACTGAAAAAAGGTCAGTCCTCCGATCAATCggaaaaaatttttctatgttaTCTGTGCGACAAAGAGTTCTTGTCGAAGAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTAGGAAGGTATTGTCTCTGAAAAAAACACCGGATACACCGCAAAAGAACGTTTATAATGTTGCAAAGTCTCCTCCATCGGGTAAGAGATCAAACAAGTGCCCGTATTGTGGcaaacaatacatatatataacctCGTTTAgtaaacatttgaaaaaacatgaaagggagaaagaagagggCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGTCTAGATcttgataattataaagatGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGTGGCTCTAGAAGAGCatagagaggaagaaagaaggaacgagGTTAAAAGAGGCAATAACGGTGGcggtgatggtggtggtggtggtggtggtggtggcggcggcgaaggaggaggaggaggaaataacaacaataacaacgaTGATGATGACaaccacgacgacgacgacgacgactacgACGATAAAAGACAAGTGggtaatttgattaaaaaagagGAACAGGAGAATCGCAATGTCCGTACAGAAACGTTTGCATGCGACAAGTGCgcagagaaattttatacaaaacgtGGCTTACAAAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGAAGAATTCGATTCACtggaaaaattaagaaaccaTCGTGCGAAGCATGTGGTTGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGACACAGAGTATCCAATTAATAAGGAAACGTGTGATTACGAGACAGAGGATAAAGATAGCATAGACAGGAATCACAGGATGGAAAACAAATCAATACCAGGATTGTtggaaacagaaaataatttatcgaagaaaaatgatagAAACATGGAGACCCATCGTCATTCGGGGATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAAAAACACACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACAATGTAACAAAACATTTGGTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTCCTTCATGGGCAAGAATATGACCCaaataaacgtattaaaagAGTTGCTGCGAGAGCTGcacaaaaaattatcgataaaattaaaaccgAGGATGGTTTGGAAGATTTCgacgaggaagaggaaaatatcgataaaattaatcgtgcTAATGTtacagataataattatagtcGGAATAAGCGAGAAATATCCTCGCATAAGAGACATAATCATAAGAAAGAATTGGAATGTGCCAGTTGCAATAAAAGATGCAGTTCAAAGCAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTGGTCAAGTCGGAAAAGCAAAAGCAATCGGCAGATAAGAAAGATTGGCAAAAGGACTACGCTAATGAGGAGATGTACCATAAAGAGAATAGAGATGACGATTATGATTCGGATTTTGAAAGTGGTTTGGATTGGCCAATGGATAATCACGAGTGCCCACAGTGTAAAAAACGATACAGCAcgaaaaaatcattattacGTCATCAATTGTTGCACGAAGATCCGAATTTCGAATGCGATATTTGCAATGTTAAGTTTTACCGCAAAGACAAACTAAAGGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCGAAACATGTTACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAACCAGGTGAAAAGATTGGTAGGAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCACGAAGGAAAAAAGTATCTGTGTGATATATGtccaaaaaaattttatagaaggGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAGGAACAGTTGACAAATCATTTGTCAAAGCATGACCGAACTTTcaagaagaataaagaaacggACAGCTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGAAGTTTGTTCGCGACCGTTCACAACTAACgcttatttaaaaatgcacaTGAGAACGCATACGCAAGAACGACCGTATGTTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAGTCACTTAAAGAACACGTCTTCATCCATACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATATGCTCACAGTAAAAGATGTAAGCAAACTTTTGTTCAGAATCAAAATCGTGCTCAAACACTAACCACGCAAGTACAGGCTACGCCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACAAGGACAAATAGTAAAGgcacaaaatattaaaaccaTTACTATCACTAAACCTGAATCAGTCGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACATCATAA
Protein Sequence: MNKKCHMLAKNSNAVMEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSTNEQEQQQQQQHHHQQHQHQHQHQHQHPSGESFQREDCTEYVDLLVKAADATTKQEDEEEDEEEEKSDITNTVVQPDADSQCQNETRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKVKQKEVALEEHREEERRNEVKRGNNGGGDGGGGGGGGGGGEGGGGGNNNNNNDDDDNHDDDDDDYDDKRQVGNLIKKEEQENRNVRTETFACDKCAEKFYTKRGLQKHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYPINKETCDYETEDKDSIDRNHRMENKSIPGLLETENNLSKKNDRNMETHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDKINRANVTDNNYSRNKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQSADKKDWQKDYANEEMYHKENRDDDYDSDFESGLDWPMDNHECPQCKKRYSTKKSLLRHQLLHEDPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTTQVQATPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00229494;
80% Identity: -