Bcul015305.1
Basic Information
- Insect
- Bombus cullumanus
- Gene Symbol
- -
- Assembly
- GCA_014737535.1
- Location
- JACXIX010000044.1:1547604-1551262[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.12 12 6.7 2.3 1 23 195 217 195 217 0.94 2 17 0.0003 0.028 14.9 1.4 2 23 252 273 251 273 0.98 3 17 0.00037 0.035 14.6 1.0 1 23 412 434 412 434 0.96 4 17 0.001 0.096 13.2 0.5 2 23 438 459 437 459 0.96 5 17 0.16 15 6.3 3.2 1 23 532 555 532 555 0.94 6 17 0.00033 0.031 14.8 0.7 1 21 561 581 561 585 0.92 7 17 0.0015 0.14 12.7 3.1 2 23 664 685 663 685 0.95 8 17 2.2e-05 0.0021 18.5 4.1 1 23 742 764 742 764 0.97 9 17 0.00022 0.021 15.3 0.7 1 20 769 788 769 790 0.94 10 17 0.038 3.5 8.3 0.6 2 23 801 822 801 822 0.97 11 17 2.3e-05 0.0021 18.4 0.6 2 23 861 882 860 882 0.97 12 17 2.1e-05 0.0019 18.6 1.6 1 23 887 909 887 909 0.95 13 17 0.00012 0.011 16.2 2.9 1 23 915 937 915 937 0.98 14 17 0.012 1.1 9.9 0.3 1 17 953 969 953 970 0.88 15 17 2.1 2e+02 2.8 0.1 8 23 1016 1031 1015 1031 0.93 16 17 0.00012 0.011 16.2 4.1 1 23 1037 1059 1037 1059 0.96 17 17 0.0077 0.73 10.5 0.3 1 20 1065 1084 1065 1086 0.89
Sequence Information
- Coding Sequence
- ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTGCCTTGAAAATATTTCAACGGTAGAACACGATTATATATTACAGCAAGAATGTATATTATCTAGCACGAATGAGCAGGAGCAACAACAACAGCATCATCATCAACAACATCAGCATCAACATCAACATCCCTCCGGAGAATCGTTTCAGCGGGAGGATTGCACCGAGTACGTAGATCTATTGGTAAAAGCAGCTGATGCAACGACAAAACAAGAAAATGAGGAGGAAGATGAAGAAGAAGAAAAATCGGATATTACGAACACGGTTGTTCAACCAGATGCAGATCCTCAGTGTCAAAATGAAACGAGGAGAAGCAAACGTAAATTAGTTCGGCGAAATCTTGAAACGAGACGAGATTCCGATGAGGAAAATTATTTTGAAAATTTGAATTTAAGCTCGAGACTGAAAAAAGGTCAGTCCTCTGATCAATCGGAAAAAATTTTTCTATGTTATCTGTGCGACAAGGAGTTTTTGTCGAAGAATGTCTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGGAAGGTATTGTCTCTGAAAAAAACACCGGATACACCGCAAAAGAACGTTTATAATGTTGCAAAGTCTCCTCCATCGGGTAAGAGATCAAACAAGTGTCCGTATTGTGGCAAGCAATACATATATATAACCTCGTTTAGTAAACATTTAAAAAAACATGAAAGGGAGAAAGAAGAGGGCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGTCTAGATCTTGATAATTATAAAGACGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGTGGGTCCTGAAGAGCATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGACAAGTGGGTAATTTGATTAAAAAAGAGGAACAGGAGAATTGCAATGTTCATACAGAAACGTTTGCATGCGACAAGTGCACAGAGAAATTTTATACAAAACGTGGCTTACAAAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGAAAAATTCGAATCACTGGAAAAATTAAGAAACCATCGTGCGAAGCATGTAGTTGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGTTACAGAGTATCCAATTAATAAGGAAACGTGTGATTACAAGACAGAGGATAAAGATAACATAGACATGAATCACAAGATGGAAAACAAACCAATACCAGAATTGCTGGAAACAGAAAATAATTTATCGAAGAAAAATGATAGAAACATGGAGACCCATCGTCATTCGGGGATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAAAAACACACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACAATGTAACAAAACATTTGGTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTCCTTCATGGGCAAGAATATGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACAAAAAATTATCGATAAAATTAAAACCGAGGATGGCTTGGAAGATTTCGACGAGGAAGAGGAGAATATCGATAGAATCAATCGCGCTACTGTTACAGATAATAATTACAGTCGGAATAAGCGAGAAATATCCTCGCATAAGAGACATAATCATAAGAAAGAATTGGAATGTGCGAGTTGCAATAAAAGATGCAGTTCAAAGCAAATGTTAACAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTGGTTAAGTCAGAAAAGCAAAAGCAATCGGCAGATAAGAAAGATTGGCAAAGGGACTACGCTAATGAGGAGATGTACCATAAAGACAATAGGGATGACGATTATGATTCGGATTTTGAAAGTGGTTTGGATTGGCCAATGGATAATCACGAGTGCCCAAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGTTACGTCATCAATTGTTGCACGAAGAACCGAATTTCGAATGCGATATTTGCAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACTTTTGAGAACAATGAGATTCTGCGGGAACATAGATCGAAACATGTTACCGAAGGCATTCTTACGGAAGAAGATCTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAACCAGGTGAAAAGATTGGTAGGAAGAGAAGAACTGATATCGTAGGTTTAGAGTGCACGGAATGCAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCACGAAGGAAAAAAGTATCTGTGTGATATATGTCCAAAAAAATTTTATAGAAGGGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGTACACGATGCACAAAGCGTTTCATTAAAGAGGAACAATTGACAAATCATTTGTCAAAGCATGACCGAAATTTTAAGAAGAGTAAAGAAACGGACAGCTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATGTAACTTCGCATACAGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTAAAGTCGCTCAAAGAACACGTCTTCATTCATACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAAAATCGTGCTCAAACACTAATCGCGCAAGTACAGGCTACGCCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACATGGACAAATAGTAAAGGCACAAAATATTAAAACCATTACTATCACTAAACCTGAATCAGTCGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACATCATAA
- Protein Sequence
- MEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSTNEQEQQQQHHHQQHQHQHQHPSGESFQREDCTEYVDLLVKAADATTKQENEEEDEEEEKSDITNTVVQPDADPQCQNETRRSKRKLVRRNLETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKVKQKEVGPEEHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQVGNLIKKEEQENCNVHTETFACDKCTEKFYTKRGLQKHAISHVVLSCSICEEKFESLEKLRNHRAKHVVEGVLTEQELEMVTEYPINKETCDYKTEDKDNIDMNHKMENKPIPELLETENNLSKKNDRNMETHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRATVTDNNYSRNKREISSHKRHNHKKELECASCNKRCSSKQMLTKHMEQHVKDEQQRVVKSEKQKQSADKKDWQRDYANEEMYHKDNRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRNFKKSKETDSSKRFLCEICSKSFTQSTTLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRAFARADTLANHVTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLIAQVQATPQNQQRVLQQTTLEHGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215850;
- 90% Identity
- iTF_00229494;
- 80% Identity
- -