Basic Information

Insect: Bombus impatiens
Gene Symbol: -
Assembly: GCA_000188095.4
Location: NT:65706-71421[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.1 6.4 6.6 2.3 1 23 215 237 215 237 0.94

2 18 0.00077 0.048 13.3 3.1 2 23 272 293 271 293 0.98

3 18 0.00079 0.05 13.3 0.5 1 23 432 454 432 454 0.96

4 18 0.0014 0.084 12.6 0.3 2 23 458 479 457 479 0.96

5 18 0.13 8.2 6.3 3.2 1 23 552 575 552 575 0.94

6 18 0.00028 0.017 14.7 0.7 1 21 581 601 581 605 0.92

7 18 0.001 0.063 13.0 2.9 2 23 684 705 683 705 0.95

8 18 1.8e-05 0.0011 18.5 4.1 1 23 762 784 762 784 0.97

9 18 0.00018 0.011 15.3 0.7 1 20 789 808 789 810 0.94

10 18 0.031 1.9 8.3 0.6 2 23 821 842 821 842 0.97

11 18 1.9e-05 0.0012 18.4 0.6 2 23 881 902 880 902 0.97

12 18 1.7e-05 0.0011 18.5 1.6 1 23 907 929 907 929 0.95

13 18 9.5e-05 0.0059 16.2 2.9 1 23 935 957 935 957 0.98

14 18 3e-06 0.00019 20.9 0.4 1 23 973 995 973 995 0.95

15 18 2.4e-07 1.5e-05 24.3 0.6 1 23 1001 1023 1001 1023 0.99

16 18 1.5e-05 0.00091 18.7 0.2 1 23 1029 1051 1029 1051 0.98

17 18 9.8e-05 0.0061 16.2 4.1 1 23 1057 1079 1057 1079 0.96

18 18 0.0064 0.4 10.4 0.3 1 20 1085 1104 1085 1106 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.1	6.4	6.6	2.3	1	23	215	237	215	237	0.94
2	18	0.00077	0.048	13.3	3.1	2	23	272	293	271	293	0.98
3	18	0.00079	0.05	13.3	0.5	1	23	432	454	432	454	0.96
4	18	0.0014	0.084	12.6	0.3	2	23	458	479	457	479	0.96
5	18	0.13	8.2	6.3	3.2	1	23	552	575	552	575	0.94
6	18	0.00028	0.017	14.7	0.7	1	21	581	601	581	605	0.92
7	18	0.001	0.063	13.0	2.9	2	23	684	705	683	705	0.95
8	18	1.8e-05	0.0011	18.5	4.1	1	23	762	784	762	784	0.97
9	18	0.00018	0.011	15.3	0.7	1	20	789	808	789	810	0.94
10	18	0.031	1.9	8.3	0.6	2	23	821	842	821	842	0.97
11	18	1.9e-05	0.0012	18.4	0.6	2	23	881	902	880	902	0.97
12	18	1.7e-05	0.0011	18.5	1.6	1	23	907	929	907	929	0.95
13	18	9.5e-05	0.0059	16.2	2.9	1	23	935	957	935	957	0.98
14	18	3e-06	0.00019	20.9	0.4	1	23	973	995	973	995	0.95
15	18	2.4e-07	1.5e-05	24.3	0.6	1	23	1001	1023	1001	1023	0.99
16	18	1.5e-05	0.00091	18.7	0.2	1	23	1029	1051	1029	1051	0.98
17	18	9.8e-05	0.0061	16.2	4.1	1	23	1057	1079	1057	1079	0.96
18	18	0.0064	0.4	10.4	0.3	1	20	1085	1104	1085	1106	0.89

Sequence Information

Coding Sequence: ATGGACAAAAAAGTGCCACATGTTAGCAAAGAACAGAACTCTAACGCGGTAATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACgaagaaatgttaaaacacGAAAACGGGGATAACGATTgccttgaaaatatttcaacggtAGAACACGATTATATATTGCAACAGGAGTGTATATTATCTAGCACGAATGAGCAGgagcagcaacaacagcatcatcatcatcaacaACATCAACATCAACATCAACATCAACATTCCTCCGGAGAATCGTTTCAGCGGGAGGATTGCACCGAGTACGTAGATCTATTGGTAAAAGCAGCTGATGCAACGACAAAACAAGAAGATGAGGtggaagatgaagaagaagaaaaatcggataTTACGAACACGGTTATTCAGCCAGATGCAGATTCTCAGTGTCAaaatgaaacgagaagaagCAAACGCAAATTAGTTCGgcgaaattttgaaacgagACGAGATTCCGACGAGGAAaactattttgaaaatttgaatttaagcTCGAGACTGAAAAAAGGTCAGTCCTCTGATCAATCggaaaaaatttttctatgttaTCTGTGCGACAAAGAGTTTTTGTCGAAGAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAAAACACCGGATACACCGCAAAAGAACGTTTATAATGTTGCAAAGTCCCCTCCATCGGGTAAGAGATCAAACAAGTGCCCGCATTGTGGCAagcaatacatatatataacctCGTTTagtaaacatttgaaaaaacatgaaagggagaaagaagagggCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACACAGTCTAGATcttgataattataaagatGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGTGGGTCCAGAAGAGCatagagaggaagaaaaagggaacgaGGCAAAAAGAGGCAATAACGGTGGCggtgatggtggtggtggtggtggtggcggcggcgaaggaggaggaggagcaggaaataacaataacaacaatgATGATGACAaccacgacgacgacgacgatgacgacgacgatgaatACAATGACTACGTCGATAAAAGACAAGTGggtaatttgattaaaaaagagGAACAGGAGAATCGCAATGTCCGTACAGAAACGTTTGCATGCGACAAGTGTgcagagaaattttatacaaaacgtGGCTTACAAAGACATGCGATTTCGCATGTTGTTCTCAGTTGCAGTATATGCGAAGAAGAATTCGAttcattggaaaaattaagaaatcatcGCGCGAAACACGTGGTTGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGATACAGAGTATTCAATTAGTAAGGAAACGTGTGATTACGAGATAGAGAATAAAGATAGCATAGACAGGCATCACAGGATGGAAAACAAATCAATACCAGGATTGCtggaaacagaaaataatgtatcgaagaaaaatgatagAAACATGGAGACCCATCGTCATTCAGGGATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAAAAACATACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACAATGTAACAAAACATTTGGTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTCCTTCATGGACAAGAATATGACCCtaataaacgtattaaaagAGTTGCTGCGAGAGCTGcacaaaaaattatcgataaaattaaaaccgAGGATGGTTTGGAAGATTTCgacgaggaagaggagaaTATCGATAGAATTAATCGCACTAATGTtacagataataattatagtcgGAATAAGCGAGAAATATCCTCGCATAAGAGACATAATCATAAGAAGGAATTGGAATGTGCGAGTTGTAATAAAAGATGCAGTTCAAAGCAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTGGTCAAGTCGGAAAAGCAAAAGCAATCGGCAGATAAGAAAGATTGGCAAAGGGACTACGCTAATGAGGAGATGTACCATAAAGAGAATAGAGATGACGATTATGATTCGGATTTTGAAAGTGGTTTGGATTGGCCAATGGATAATCACGAGTGCCCGAAGTGTAAAAAACGATACAGCACGAAAAAATCACTGTTACGTCATCAATTGTTGCACGAAGAACCGAATTTCGAATGCGATATTTGCAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCGAAACATGTTACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAACCAGGTGAAAAGATTGGTAGGAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCcacgaaggaaaaaagtatCTGTGTGATATATGtccaaaaaaattttatagaaggGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACAAGATGCACAAAGCGTTTCATTAAAGAGGAACAGTTGACAAATCATTTGTCAAAGCATGACCGAACTTTcaagaagaataaagaaacggACAGCTCGAAAAGATTCCTTTGtgaaatttgttcgaaaagttttaCGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGAAGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTGAAAATGCACATGAGAACGCATACCCAAGAACGACCGTATGTTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGTGAGGCTAAATACCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAGTCGCTCAAAGAACACGTCTTCATTCATACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCATAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAAAATCGTGCTCAAACACTAACCACGCAAGTACAGGCCACGCCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACAAGGACAAATAGTAAAGGCACAGAATATTAAAACCATTACTATCACTAAACCTGAATCAGTCGCCACTCAACAAACAGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACATCATAA
Protein Sequence: MDKKVPHVSKEQNSNAVMEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSTNEQEQQQQHHHHQQHQHQHQHQHSSGESFQREDCTEYVDLLVKAADATTKQEDEVEDEEEEKSDITNTVIQPDADSQCQNETRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVAKSPPSGKRSNKCPHCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKVKQKEVGPEEHREEEKGNEAKRGNNGGGDGGGGGGGGGEGGGGAGNNNNNNDDDNHDDDDDDDDDEYNDYVDKRQVGNLIKKEEQENRNVRTETFACDKCAEKFYTKRGLQRHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYSISKETCDYEIENKDSIDRHHRMENKSIPGLLETENNVSKKNDRNMETHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRTNVTDNNYSRNKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQSADKKDWQRDYANEEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTTQVQATPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00229494;
80% Identity: -