Bsup002313.1
Basic Information
- Insect
- Bombus superbus
- Gene Symbol
- -
- Assembly
- GCA_014737385.1
- Location
- JACXIK010000024.1:3613458-3618389[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.14 9.3 6.7 2.3 1 23 196 218 196 218 0.94 2 18 0.00032 0.022 14.9 1.4 2 23 253 274 252 274 0.98 3 18 0.0017 0.12 12.6 0.8 1 23 417 439 417 439 0.96 4 18 0.0018 0.12 12.6 0.3 2 23 443 464 442 464 0.96 5 18 0.17 12 6.3 3.2 1 23 537 560 537 560 0.94 6 18 0.00036 0.025 14.8 0.7 1 21 566 586 566 590 0.92 7 18 0.0013 0.091 13.0 2.9 2 23 669 690 668 690 0.95 8 18 2.4e-05 0.0016 18.5 4.1 1 23 747 769 747 769 0.97 9 18 0.00024 0.017 15.3 0.7 1 20 774 793 774 795 0.94 10 18 0.041 2.8 8.3 0.6 2 23 806 827 806 827 0.97 11 18 2.5e-05 0.0017 18.4 0.6 2 23 866 887 865 887 0.97 12 18 2.2e-05 0.0015 18.6 1.6 1 23 892 914 892 914 0.95 13 18 0.00013 0.0086 16.2 2.9 1 23 920 942 920 942 0.98 14 18 4e-06 0.00027 20.9 0.4 1 23 958 980 958 980 0.95 15 18 3.2e-07 2.2e-05 24.4 0.6 1 23 986 1008 986 1008 0.99 16 18 3.5e-05 0.0024 18.0 0.2 1 23 1014 1036 1014 1036 0.97 17 18 0.00013 0.0089 16.2 4.1 1 23 1042 1064 1042 1064 0.96 18 18 0.0084 0.58 10.5 0.3 1 20 1070 1089 1070 1091 0.89
Sequence Information
- Coding Sequence
- ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGAAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTGCCTTGAAAATATTTCAACGGTAGAACACGATTATATATTACAGCAGGAATGTATATTATCTAGCGCGAATGAGCAGGAGCAACAACAACAGCATCATCATCATCATCATCAACATCAACATCAACATCAACTTTCCTCCGAAGAATCGTTTCAACGGGAGGATTGCACTGAGTACGTAGATCTGTTGGTAAAAGCAGCCGATGCAACGACAAAACAAGACGACGAGGAGGAAGATGAAGAAGAAAAATCGGATATTACGAACACGGACGTTCAGCCAGAGGCAGATTCTCAGTGTCAAAATGAAACGAGAAGAAGCAAACGTAAATCAGTTCGGCGAAATTTTGAAACGAGACGAGATTCCGATGAGGAAAACTATTTTGAAAATTTGAATTTAAGCTCGAGATTGAAAAAAGGTCAATCCTCTGATCAATCGGAAAAAATTTTTCTATGTTATCTGTGCGACAAGGAGTTTTTGTCGAAGAATGTTTTGAAGGAACATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAGAAAACACCAGATACACCTCAAAAAAACGTTTATAATCTTGCAAAGTCTCCTCCATCGGGTAAGAGATCAAACAAGTGCCCGTATTGTGGCAAGCAATACATATATATAACCTCGTTTAGTAAACATTTGAAAAAACATGAAAGGGAGAAAGAAGAGGGGAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGTCTAGATCTTGATAATTATAAAGATGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGCCAAGCAGAAAGATGTGGGTCCAGAAGAGCATAGAGAGGAAGAAAAAGGGAACGAGGTGAAAAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGTAATTTGATTAGAAAAGAGGAACAGGAGAATCGCAATGTTCGTACAGAAACATTTGCATGCGACAAGTGCGCACAGAAATTTTATACGAAACGTGGCTTACAAAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGAAGAATTCGATTCATTGGAAAAATTAAGAAACCATCGCGCGAAGCACGTGGTTGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGATACAGAATATGCAATTAATAAGGAAACGTGTGATTACGAGACAGAGGATAAAGATAGCATAGACAGGAATCACAGGACAGAAAACAAATCAATACCAGGATTGCTGGAAACAGAAAATAATTTATCGAAGAAAAATGATAGAAACATGGAGGCCCATCGTCATTCGGGGATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAGAAACACACGGAACAGCAACACGAACGTGTAAAAACTTACAAGTGCACGCAATGTAACAAAACATTTGGTAATGAACTTACTTTACGCAATCATCTTATAGCCACTAATCATAAAACTTTCCTTCATGGGCAAGAATATGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACAAAAAATTATCGATAAAATTAAAACCGAGGATGATTTGGAAGATTTCGATGAGGAAGAGGAGAATATTGATAGAATTAATCGCGCTAATGTTACAGATAACAATTATAGTCGGAATAAGCGAGACATATCCTCGCATAAGAGACATAATTATAAGAAAGAATTGGAATGTGCGAGTTGCAATAAAAGATGCAGTTCAAAGCAATTGCTAACAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTGGTCAAGTCGGAAAAGCAAAAGCAATCGGCAGATAAGAAAGATTGGCAAAAGGACTACGCTAATGAGGAGATGTACCACAAAGAGAATAGAGATGATGATTATGATTCGGATTTCGAAAGTGGTTTGGATTGGCCGATGGATAATCACGAGTGCCCAAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGTTACGTCATCAATTGTTGCATGAAGAACCGAATTTCGAATGCGATATTTGCAATGTCAAGTTTTACCGCAAAGACAAACTGAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATTTGTGGAGACACGTTTGAGAACAACGAGATTCTGCGAGAGCATAGATCGAAACATGTTACCGAAGGCATTCTTACGGAAGAGGACTTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAGCCAGGCGAAAAAATTGGTAGGAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCACGAAGGGAAAAAGTATCTGTGTGATATATGTCCAAAAAAATTTTATAGAAGGGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAACCGTATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAGGAACAGTTGACAAATCATCTGTCAAAACACGACCGAACTTTCAAGAAGAATAAAGAAACGGACAGCTCGAAAAGATTCCTTTGTGAAATTTGCTCAAAGAGCTTTACACAATCGACGACATTGATTGCCCACCTTCGAGCGCATAATGGTATAAAACCATACGTTTGCGAGGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTGAAAATGCACATGAGAACGCATACGCAAGAACGGCCGTATATTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGCGAGGCTAAATATCATTGTAAGTACTGCCCGAAAAACTTCCGTCGTCTAAAGTCGCTCAAAGAACACGTTTTCATTCATACTGGGCAAAGACCTTATGCCTGTCCAACCTGTGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAAAATCGTGCTCAAACGCTAACCGCGCAAGTACAGGCTACGCCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACAAGGACAAATAGTAAAGGCACAAAATATTAAAACCATTACTATTACTAAACCTGAATCAGTTGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACGGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACGTCATAA
- Protein Sequence
- MEEVIDQTIATEQTSEECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSANEQEQQQQHHHHHHQHQHQHQLSSEESFQREDCTEYVDLLVKAADATTKQDDEEEDEEEKSDITNTDVQPEADSQCQNETRRSKRKSVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNLAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKAKQKDVGPEEHREEEKGNEVKRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGNLIRKEEQENRNVRTETFACDKCAQKFYTKRGLQKHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYAINKETCDYETEDKDSIDRNHRTENKSIPGLLETENNLSKKNDRNMEAHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDDLEDFDEEEENIDRINRANVTDNNYSRNKRDISSHKRHNYKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQSADKKDWQKDYANEEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQATPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215850;
- 90% Identity
- iTF_00229494;
- 80% Identity
- -