Bpas018858.1
Basic Information
- Insect
- Bombus pascuorum
- Gene Symbol
- -
- Assembly
- GCA_905332965.1
- Location
- HG995274.1:16373536-16377240[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.14 14 6.7 2.3 1 23 204 226 204 226 0.94 2 18 0.00033 0.034 14.9 1.4 2 23 261 282 260 282 0.98 3 18 0.0014 0.15 12.9 0.6 1 23 419 441 419 441 0.96 4 18 0.0018 0.19 12.6 0.3 2 23 445 466 444 466 0.96 5 18 0.17 18 6.3 3.2 1 23 539 562 539 562 0.94 6 18 0.00037 0.039 14.8 0.7 1 21 568 588 568 592 0.92 7 18 0.0013 0.14 13.0 2.9 2 23 671 692 670 692 0.95 8 18 2.4e-05 0.0025 18.5 4.1 1 23 749 771 749 771 0.97 9 18 0.00024 0.026 15.3 0.7 1 20 776 795 776 797 0.94 10 18 0.041 4.3 8.3 0.6 2 23 808 829 808 829 0.97 11 18 2.5e-05 0.0026 18.4 0.6 2 23 868 889 867 889 0.97 12 18 2.2e-05 0.0024 18.6 1.6 1 23 894 916 894 916 0.95 13 18 0.00013 0.013 16.2 2.9 1 23 922 944 922 944 0.98 14 18 4e-06 0.00042 20.9 0.4 1 23 960 982 960 982 0.95 15 18 3.3e-07 3.5e-05 24.3 0.6 1 23 988 1010 988 1010 0.99 16 18 1.9e-05 0.0021 18.8 0.2 1 23 1016 1038 1016 1038 0.98 17 18 0.00013 0.014 16.2 4.1 1 23 1044 1066 1044 1066 0.96 18 18 0.0085 0.89 10.5 0.3 1 20 1072 1091 1072 1093 0.89
Sequence Information
- Coding Sequence
- ATGGAGGAGGTAATCGATCAAACTATCGTTACGGAACAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTGCCTTGAAAATATTTCAACGGTAGAACACGATTATATATTACAGCAAGAATGTATATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTCCGGAGAATCGTTCCAGCGGGAGGATTGTTCCGAGTACGTAGATCTATTGGTAAAAGCAGCTGATGCAACGACAAAACAAGAAGATGAGGAGGAAGATGAAGAAGAAGAAAAATCGGTTATTACGAACACGGTTGTTCAGCCAGATGCAGATTCTCAGTGTCAAAATGAAACGAGGAGAAGCAAACGTAAATTAGTTCGGCGAAATTTTGAAACGAGACGAGATTCCGATGAGGAAAACTATTTTGAAAATTTGAATTTGAGCTCGAGACTGAAAAAAGGTCAGTCCTCCGATCAATCGGAAAAAATTTTTCTATGTTATCTGTGCGACAAAGAGTTTTTGTCGAAGAATGTTTTGAAGGAGCATATGCATTCTCATGAAGAAGTTCGGAAGGTATTGTCTCTGAAAAAAACACCGGATATACCGCAAAAGAACGTTTATAATGTTACGAAGTCTCCTCCGTCGGGTAAGAGATCAAACAAGTGCCCGTATTGTGGCAAGCAATACATATATATAACTTCGTTTAGTAAACATTTGAAAAAACATGAAAGGGAGAAAGAAGAGGGCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGTCTAGATTTTGATAATTATAAAGATGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGCGGGTCCAGAAGAGCATAGAGAGGAAGAAAGAGGGAACGAGACGAAAAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGTAATTTGATTAAAAAAGAGGAACAGGAGAATCGCAATGTCCGTACAGAAACGTTTGCATGCGACAAGTGCGCAGAGAAATTTTATACAAAACGTGGCTTACAAAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGAAGAATTTGATTCACTGGAAAAATTAAGAAACCATCGCGCGAAGCACGTAGTTGAAGGTGTTCTAACAGAACAAGAACTTGAGATGGATACAGAATATCCAATTAATAAGGAAACGTGTGATTACGAGACAGAAAATAAAGATAGCATAGACAGGAATCACAGGATGGAGAACAAATCGATATCAGGATTGTTGGAGACAGAAAATAATTTATCGAAGAAAAATGACAGAAACACGGAGACCCATCGTCATTCGGGGATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAAAAACACACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACAATGTAATAAAACATTTGGTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTTCTTCATGGGCAAGAATATGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACAAAAAATTATCGATAAAATTAAAACCGAGGATGGTTTGGAAGATTTCGACGAGGAAGAGGAGAATATCGATAGAATTAATCGCGCTAATGTTACGGATAATAATTATAGTCGGAGTAAGCGAGAAATATCCTCGCATAAGAGACATAATCATAAGAAAGAATTGGAATGTGCAAGCTGCAATAAAAGATGCAGTTCAAAGCAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAACAACAACGAGTAGTCAAGTCGGAAAAGCAAAAGCAATCGATGGATAAGAAAGATTGGCAAAGAGACTATCCTAACGACGAGATGTACCACAAGGAGAATAGAGATGACGATTATGATTCGGATTTCGAAAGTGGTTTGGATTGGCCAATGGATAATCACGAGTGCCCAAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGCTCCGTCATCAATTGTTGCACGAAGAACCGAATTTCGAATGCGATATTTGTAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCAAAACATGTCACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAACCAGGTGAAAAGATTGGTAGAAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGACTTTTACGACATATTCAAGTCCACGAAGGAAAAAAGTATCTGTGTGATATATGTCCAAAAAAATTTTATAGAAGGGAACATTTAAAGATACATGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAAGAACAGTTGACAAATCACTTGTCAAAGCATGACCGAACTTTCAAGAAGAATAAAGAAACGGACAGCTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGATGTTTGTTCGCGACCGTTCACGACTAACGCTTATTTGAAAATGCATATGAGAACGCATACGCAAGAACGACCGTATGTTTGTCAATATTGTTCACGGGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTCAAGTCGCTCAAAGAACACGTCTTCATTCATACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTCGTTCAGAATCAAAATCGTGCTCAAACACTAACCGCGCAAGTACAGGCTGCGCCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACAAGGACAAATAGTAAAGGCACAAAATATTAAAACCATTACTATCACTAAACCTGAATCAGTCGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCCTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTGCCAGAAGGAACTAAAATATTTACTACGTCATAA
- Protein Sequence
- MEEVIDQTIVTEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSGESFQREDCSEYVDLLVKAADATTKQEDEEEDEEEEKSVITNTVVQPDADSQCQNETRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDIPQKNVYNVTKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDFDNYKDARRHLDNEYRKKVKQKEAGPEEHREEERGNETKRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGNLIKKEEQENRNVRTETFACDKCAEKFYTKRGLQKHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYPINKETCDYETENKDSIDRNHRMENKSISGLLETENNLSKKNDRNTETHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRANVTDNNYSRSKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQSMDKKDWQRDYPNDEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCDVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQAAPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215850;
- 90% Identity
- iTF_00229494;
- 80% Identity
- -