Basic Information

Insect: Bombus opulentus
Gene Symbol: -
Assembly: GCA_034509555.1
Location: CM067417.1:1640995-1644653[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.16 12 6.7 2.3 1 23 197 219 197 219 0.94

2 18 0.00038 0.03 14.9 1.4 2 23 254 275 253 275 0.98

3 18 0.0017 0.13 12.9 0.6 1 23 412 434 412 434 0.96

4 18 0.0021 0.16 12.6 0.3 2 23 438 459 437 459 0.96

5 18 0.2 16 6.3 3.2 1 23 532 555 532 555 0.94

6 18 0.00043 0.033 14.8 0.7 1 21 561 581 561 585 0.92

7 18 0.0016 0.12 13.0 2.9 2 23 664 685 663 685 0.95

8 18 2.8e-05 0.0022 18.5 4.1 1 23 742 764 742 764 0.97

9 18 0.00028 0.022 15.3 0.7 1 20 769 788 769 790 0.94

10 18 0.048 3.8 8.3 0.6 2 23 801 822 801 822 0.97

11 18 2.9e-05 0.0023 18.4 0.6 2 23 861 882 860 882 0.97

12 18 2.6e-05 0.0021 18.6 1.6 1 23 887 909 887 909 0.95

13 18 0.00015 0.012 16.2 2.9 1 23 915 937 915 937 0.98

14 18 4.6e-06 0.00036 20.9 0.4 1 23 953 975 953 975 0.95

15 18 3.9e-07 3e-05 24.3 0.6 1 23 981 1003 981 1003 0.99

16 18 2.3e-05 0.0018 18.8 0.2 1 23 1009 1031 1009 1031 0.98

17 18 0.00015 0.012 16.2 4.1 1 23 1037 1059 1037 1059 0.96

18 18 0.0099 0.77 10.5 0.3 1 20 1065 1084 1065 1086 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.16	12	6.7	2.3	1	23	197	219	197	219	0.94
2	18	0.00038	0.03	14.9	1.4	2	23	254	275	253	275	0.98
3	18	0.0017	0.13	12.9	0.6	1	23	412	434	412	434	0.96
4	18	0.0021	0.16	12.6	0.3	2	23	438	459	437	459	0.96
5	18	0.2	16	6.3	3.2	1	23	532	555	532	555	0.94
6	18	0.00043	0.033	14.8	0.7	1	21	561	581	561	585	0.92
7	18	0.0016	0.12	13.0	2.9	2	23	664	685	663	685	0.95
8	18	2.8e-05	0.0022	18.5	4.1	1	23	742	764	742	764	0.97
9	18	0.00028	0.022	15.3	0.7	1	20	769	788	769	790	0.94
10	18	0.048	3.8	8.3	0.6	2	23	801	822	801	822	0.97
11	18	2.9e-05	0.0023	18.4	0.6	2	23	861	882	860	882	0.97
12	18	2.6e-05	0.0021	18.6	1.6	1	23	887	909	887	909	0.95
13	18	0.00015	0.012	16.2	2.9	1	23	915	937	915	937	0.98
14	18	4.6e-06	0.00036	20.9	0.4	1	23	953	975	953	975	0.95
15	18	3.9e-07	3e-05	24.3	0.6	1	23	981	1003	981	1003	0.99
16	18	2.3e-05	0.0018	18.8	0.2	1	23	1009	1031	1009	1031	0.98
17	18	0.00015	0.012	16.2	4.1	1	23	1037	1059	1037	1059	0.96
18	18	0.0099	0.77	10.5	0.3	1	20	1065	1084	1065	1086	0.89

Sequence Information

Coding Sequence: ATGGAGGAGGTAATCGATCAAACTATCGTTACGGAACAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACgaagaaatgttaaaacacGAAAACGGGGATAACGATTgccttgaaaatatttcaacggtAGAACACGATTATATATTACAGCAAGAATGTATATTATCTAGTACGAATGAGCAGgagcagcaacaacagcatCATGATCATCAACAACATCAACATCAACAACATCAACATCCCTCCGTAGAATCGTTCCAGCGGGAGGATTGCTCCGAGTACGTAGATCTATTGGTAAAAGCAGCTGATGCAACGACAAAGCAAGAAGATGAGgaggaagatgaagaagaagaaaaatcggtTATTACGAACACGGTTGTTCAGCCAGATGCAGATTCTCAGTGTCAAAATGAAACGAGGAGAAGCAAACGTAAATTAGTTCGgcgaaattttgaaacgagaCGAGATTCCGATGAGGAAaactattttgaaaatttgaatttgagcTCGAGACTGAAAAAAGGTCAGTCCTCCGATCAATcggaaaaaatttttctatgctATCTGTGCGATAAAGAGTTTTTGTCGAAGAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGGAAGGTATTGTCTCTGAAAAAAACACCGGATACACCGCAAAAGAACGTTTATAATGTTACGAAGTCTCCTCCGTCGGGTAAGAGATCAAACAAGTGCCCGTATTGTGGCAagcaatacatatatataacttcGTTTagtaaacatttgaaaaaacatgaaagggagaaagaagagggCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGTCtagattttgataattataaagatGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGCGGGTCCGGAAGAGCatagagaggaagaaagagggaacGAGACGAAAAGAGGCAATAACGGTGGCGGTGATggtggtggcggtggcggcggcgtaggaggaggaggaaataacaacaataacaataatgatGATGACaaccacgacgacgacgacgacgatgatgacGATGACAACTACAATGACTACGACAATAAAAGACAAGTGggtaatttgattaaaaaagagGAACAGGAGAATCGCAATGTCCGTACAGAAACGTTTGCATGCGACAAGTGCgcagagaaattttatacaaaacgtGGCTTACAAAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGAAGAATTTGATTCACtggaaaaattaagaaaccaTCGCGCGAAGCACGTAGTTGAAGGTGTTCTAACAGAACAAGAACTTGAGATGGATACAGAGTATCCAATTAATAAGGAAACGTGTGATTACGAGACAGAAGATAAAGATAGCATAGACAGGAATCACAGGATGGAGAACAAATCGATATCAGGATTGTTGGagacagaaaataatttatcgaagaaaaatgacagaaacaCGGAGACCCATCGTCATTCGGGGATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAAAAACACACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACacaatgtaataaaacatttggTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTTCTTCATGGGCAAGAATATGACCCtaataaacgtattaaaagaGTTGCTGCGAGAGCTGcacaaaaaattatcgataaaattaaaactgagGATGGTTTGGAAGATTTCgacgaggaagaggagaaTATCGATAGAATTAATCGCGCTAATGTTAcggataataattatagtCGGAGTAAGCGAGAAATATCCTCGCATAAGAGACATAATCATAAGAAAGAATTGGAATGTGCGAGCTGCAATAAAAGATGCAGTTCAAAGCAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAACAACAACGAGTAGTGAAGTCGGAAAAGCAAAAGCAATCGATGGATAAGAAAGATTGGCAAAGAGACTATCCTAACGACGAGATGTACCACAAGGAGAATAGAGATGACGATTATGATTCGGATTTCGAAAGTGGTTTGGATTGGCCAATGGATAATCACGAGTGCCCAAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGCTCCGTCATCAATTGTTGCACGAAGAACCGAATTTCGAATGCGATATTTGTAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCAAAACATGTCACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAACCAGGTGAAAAGATTGGTAGAAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATACACATCGAGAAAAGGACTTTTACGACATATTCAAGTCCACGAAGGAAAAAAGTATCTGTGTGATATATGtccaaaaaaattttatagaaggGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAAGAACAGTTGACAAATCACTTGTCAAAGCATGACCGAACTTTcaagaagaataaagaaacggACAGCTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGATGTTTGTTCGCGACCGTTCACGACTAACGCTTATTTGAAAATGCATATGAGAACGCATACGCAAGAACGACCGTATGTTTGTCAATATTGTTCACGGGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTCAAGTCGCTCAAAGAACACGTCTTCATTCATACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTCGTTCAGAATCAAAATCGTGCTCAAACACTAACCGCGCAAGTACAGGCTGCGCCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACAAGGACAAATAGTAAAGgcacaaaatattaaaaccaTTACTATCACTAAACCTGAATCAGTCGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCCTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTGCCAGAAGgaactaaaatatttactacgtCATAA
Protein Sequence: MEEVIDQTIVTEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSTNEQEQQQQHHDHQQHQHQQHQHPSVESFQREDCSEYVDLLVKAADATTKQEDEEEDEEEEKSVITNTVVQPDADSQCQNETRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVTKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDFDNYKDARRHLDNEYRKKVKQKEAGPEEHREEERGNETKRGNNGGGDGGGGGGGVGGGGNNNNNNNDDDNHDDDDDDDDDDNYNDYDNKRQVGNLIKKEEQENRNVRTETFACDKCAEKFYTKRGLQKHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYPINKETCDYETEDKDSIDRNHRMENKSISGLLETENNLSKKNDRNTETHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRANVTDNNYSRSKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQSMDKKDWQRDYPNDEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCDVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQAAPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00229494;
80% Identity: -