Basic Information

Insect: Bombus sonorus
Gene Symbol: -
Assembly: GCA_029958995.1
Location: JARWAU010000003.1:19869053-19872708[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.15 17 6.7 2.3 1 23 196 218 196 218 0.94

2 18 0.00037 0.041 14.9 1.4 2 23 253 274 252 274 0.98

3 18 0.0016 0.18 12.9 0.6 1 23 411 433 411 433 0.96

4 18 0.002 0.22 12.6 0.3 2 23 437 458 436 458 0.96

5 18 0.2 22 6.3 3.2 1 23 531 554 531 554 0.94

6 18 0.00041 0.046 14.8 0.7 1 21 560 580 560 584 0.92

7 18 0.0015 0.17 13.0 2.9 2 23 663 684 662 684 0.95

8 18 2.7e-05 0.003 18.5 4.1 1 23 741 763 741 763 0.97

9 18 0.00027 0.03 15.3 0.7 1 20 768 787 768 789 0.94

10 18 0.047 5.1 8.3 0.6 2 23 800 821 800 821 0.97

11 18 2.8e-05 0.0031 18.4 0.6 2 23 860 881 859 881 0.97

12 18 2.5e-05 0.0028 18.6 1.6 1 23 886 908 886 908 0.95

13 18 0.00014 0.016 16.2 2.9 1 23 914 936 914 936 0.98

14 18 4.5e-06 0.0005 20.9 0.4 1 23 952 974 952 974 0.95

15 18 3.7e-07 4e-05 24.4 0.6 1 23 980 1002 980 1002 0.99

16 18 2.2e-05 0.0024 18.8 0.2 1 23 1008 1030 1008 1030 0.98

17 18 0.00015 0.016 16.2 4.1 1 23 1036 1058 1036 1058 0.96

18 18 0.0096 1.1 10.5 0.3 1 20 1064 1083 1064 1085 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.15	17	6.7	2.3	1	23	196	218	196	218	0.94
2	18	0.00037	0.041	14.9	1.4	2	23	253	274	252	274	0.98
3	18	0.0016	0.18	12.9	0.6	1	23	411	433	411	433	0.96
4	18	0.002	0.22	12.6	0.3	2	23	437	458	436	458	0.96
5	18	0.2	22	6.3	3.2	1	23	531	554	531	554	0.94
6	18	0.00041	0.046	14.8	0.7	1	21	560	580	560	584	0.92
7	18	0.0015	0.17	13.0	2.9	2	23	663	684	662	684	0.95
8	18	2.7e-05	0.003	18.5	4.1	1	23	741	763	741	763	0.97
9	18	0.00027	0.03	15.3	0.7	1	20	768	787	768	789	0.94
10	18	0.047	5.1	8.3	0.6	2	23	800	821	800	821	0.97
11	18	2.8e-05	0.0031	18.4	0.6	2	23	860	881	859	881	0.97
12	18	2.5e-05	0.0028	18.6	1.6	1	23	886	908	886	908	0.95
13	18	0.00014	0.016	16.2	2.9	1	23	914	936	914	936	0.98
14	18	4.5e-06	0.0005	20.9	0.4	1	23	952	974	952	974	0.95
15	18	3.7e-07	4e-05	24.4	0.6	1	23	980	1002	980	1002	0.99
16	18	2.2e-05	0.0024	18.8	0.2	1	23	1008	1030	1008	1030	0.98
17	18	0.00015	0.016	16.2	4.1	1	23	1036	1058	1036	1058	0.96
18	18	0.0096	1.1	10.5	0.3	1	20	1064	1083	1064	1085	0.89

Sequence Information

Coding Sequence: ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTGccttgaaaatatttcaacggTAGAACACGATTATATATTACAGCAAGAATGTATATTATCTAGCACGAATGAGCAggaacagcaacaacagcatcaTCATCATCAACAACATCAACATCAACATCAACATCCCTCCGGAGAATCGTTTCAGCGGGAGGATTGCACCGAGTACGTAGATCTATTGGTAAAAGCAGCTGATGCAACGACAAAACAGGAAGATGAGgaggaagacgaagaagaagaaaaatcggaTATTACGAATACGGTTGTTCAGCCAGATGCAGATTCTCAGTGTCAAAATGAAACGAGGAGAAGCAAACGTAAATTAGTTCGGCGAAATTTTGAAACGAGACGAGATTCCGATGAGGAAaactattttgaaaatttgaatttaagcTCGAGACTGAAAAAAGGTCAGTCCTCTGATCAATCGGAAAAAATTTTTCTATGTTATCTGTGCGACAAAGagtttttgtcgaagaatgtttTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGAAAGGTGTTGTCTCTGAAAAAAACACCGGATACACCACAAAAGAACGTTTATAATGTTACAAAGTCTCCTCCTTCGGGTAAGAGATCAAACAAGTGCCCGTATTGTGGCAagcaatacatatatataacctcgtTTAGTAAACATTTGAAAAAACatgaaagggagaaagaagagGGCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGCCTAGATCTTGATCATTATAAAGACGCACGTCGGAATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGTGGGTCCAGAAGAGcatagagaggaagaaagagggaacgagacgaaaagaggcaatAACGGTGGCGGtgatggtggtgatggtggtggcggcggcgaaggaggaggaggaaataacaataataacaacaatgaTGATGGCaaccacgacgacgacgacgatgacgacaatGACGACTACAATGACTACGACGATAAAAGACAAGTGgataatttgattaaaaaagaGGAACAGGAGAATCGCAATGTCCGTACACAAACGTTTGCATGCGACAAGTGCGCAgagaaattttatacaaaacgtgGCTTACAAAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGAAGAATTTGATTCACTGGAAAAATTAAGAAACCATCGTGCGAAGCATGTAGTTGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGATACGGAGTATCCAATTAATAAGGAAACGTGTGATTACGAGACAGAAGATAAAGATAGCATAGACAGGAATCACAGGATGGAAAACAAATCAATATCAGGATTGCTGGAGacagaaaataatttatcgaaGAAAAATGATAGaAACATGGAGACCCATCGTCATTCGGAGATTGACTATAGTTGCAAGGTGTGTTGTCAACGATTTGCAATGAAAGAAATGTTGCAAAAACACACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACAATGTAATAAAACATTTGGTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTTCTTCATGGGCAAGAATATGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACAAAGAATTATTGATAAAATCAAAACCGAGGATGGTTTGGAAGATTTCGACGAGGAAGAGGAGAATATCGATAGAATTAATCGCGCTAATGTTATAGATAATAATTATAGTCGAAATAAGCGAGAAATATCCTCGCATAAGAGACATAATCATAAGAAAGAATTGGAATGTGCGAGCTGCAATAAAAGATGCAGTTCAAAGCAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTAGTCAAGTCGGAAAAGCAAAAGCAATCGACGGATAAGAAAGATTGGCAAAGAGACTATCCTAATGAGGAGATGTACCACAAGGAGAACAGAGACGACGATTATGATTCGGATTTCGAAAGTGGTTTGGATTGGCCAATGGATAATCACGAGTGCCCAAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGCTCCGTCATCAATTGTTGCACGAAGAACCGAATTTCGAATGCGATATTTGTAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCAAAACATGTTACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAACCAGGTGAAAAGATTGGTAGAAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCACGAAGGAAAAAAGTATCTGTGTGATATATGTCCAAAAAAATTTTATAGAAGGGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAAGAACAGTTGACAAATCACTTGTCAAAGCATGACCGAACTTTCAAGAAGAATAAAGAAACGGACAGCTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGAAGTTTGCTCGCGACCGTTCACAACTAACGCTTATTTGAAAATGCACATGAGAACGCATACGCAAGAACGACCGTATGTTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAGTCGCTCAAAGAACACGTCTTCATTCACACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAAAATCGTGCTCAAACACTAACCGCGCAAGTACAAGCTGCGCCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACAAGGACAAATAGTAAAGGCACAAAATATTAAAACCATTACTATCACTAAACCTGAATCAGTCGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTGCCAGAAGgaacaaaaatatttactaCATCATAA
Protein Sequence: MEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSTNEQEQQQQHHHHQQHQHQHQHPSGESFQREDCTEYVDLLVKAADATTKQEDEEEDEEEEKSDITNTVVQPDADSQCQNETRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVTKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDHYKDARRNLDNEYRKKVKQKEVGPEEHREEERGNETKRGNNGGGDGGDGGGGGEGGGGNNNNNNNDDGNHDDDDDDDNDDYNDYDDKRQVDNLIKKEEQENRNVRTQTFACDKCAEKFYTKRGLQKHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYPINKETCDYETEDKDSIDRNHRMENKSISGLLETENNLSKKNDRNMETHRHSEIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQRIIDKIKTEDGLEDFDEEEENIDRINRANVIDNNYSRNKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQSTDKKDWQRDYPNEEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQAAPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00229494;
80% Identity: -