Bsko007875.1
Basic Information
- Insect
- Bombus skorikovi
- Gene Symbol
- -
- Assembly
- GCA_014737355.1
- Location
- JACXIH010000040.1:1828546-1832207[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 12 6.7 2.3 1 23 197 219 197 219 0.94 2 18 0.00032 0.03 14.9 1.4 2 23 254 275 253 275 0.98 3 18 0.0004 0.037 14.6 1.0 1 23 413 435 413 435 0.96 4 18 0.0018 0.16 12.6 0.3 2 23 439 460 438 460 0.96 5 18 0.17 16 6.3 3.2 1 23 533 556 533 556 0.94 6 18 0.00036 0.033 14.8 0.7 1 21 562 582 562 586 0.92 7 18 0.0013 0.12 13.0 2.9 2 23 665 686 664 686 0.95 8 18 2.4e-05 0.0022 18.5 4.1 1 23 743 765 743 765 0.97 9 18 0.00024 0.022 15.3 0.7 1 20 770 789 770 791 0.94 10 18 0.041 3.8 8.3 0.6 2 23 802 823 802 823 0.97 11 18 2.4e-05 0.0023 18.4 0.6 2 23 862 883 861 883 0.97 12 18 2.2e-05 0.0021 18.6 1.6 1 23 888 910 888 910 0.95 13 18 0.00012 0.012 16.2 2.9 1 23 916 938 916 938 0.98 14 18 3.9e-06 0.00036 20.9 0.4 1 23 954 976 954 976 0.95 15 18 3.2e-07 3e-05 24.4 0.6 1 23 982 1004 982 1004 0.99 16 18 1.9e-05 0.0018 18.8 0.2 1 23 1010 1032 1010 1032 0.98 17 18 0.00013 0.012 16.2 4.1 1 23 1038 1060 1038 1060 0.96 18 18 0.0084 0.77 10.5 0.3 1 20 1066 1085 1066 1087 0.89
Sequence Information
- Coding Sequence
- ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAAACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTGCCTTGAAAATATTTCAACGGTAGAACACGATTATATATTACAGCAAGAATGTATATTATCTAGCACGAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTCCGGAGAATCGTTTCAGCGGGAGGATTGTACCGAGTACGTAGATCTATTGGTAAAAGCAGCTGATGCAACGACAAAACAAGAAGATGAGGACGATGAAGAAGAAGAAAAATCGGATATTACGAATACGCCTGTTCAGCCAGATACAGATTCTCAGTGTCAAAATGAAACGAGGAGAAGTAAACGTAAATTAGTTCGGCGAAATTTTGAAACGAGACGAGATTCCGATGAGGAAAACTATTTTGAAAATTTGAATTTAAGCTCGAGACTGAAAAAAGGTCAGTCCTCTGATCAATCGGAAAAAATTTTTCTATGTTATCTGTGCGACAAAGAGTTTTTGTCGAAAAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAAAACACCGGATACACCGCAAAAGAACGTTTATAATGTTGCAAAGTCTCCTCCATCGGGTAAGAGATCAAACAAGTGCCCGTATTGTGGCAAGCAATACATATATATAACCTCGTTTAGTAAACATTTGAAAAAACATGAAAGGGAGAAAGAAGAGGGCAAGGAAGAATCAATGCCTTTAGAAATATCATTCCACGAAGACGAACATAGTCTAGATCTTGATAATTATAAAGATGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGTGGGTCCAGAAGAGCGTAGAGAGGACGAAAGAGGGAACGAGGCGAAAAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGTAATTTGATTAAAAAAGAGGAACAGGAGAATCGCAATGTCCGTACAGAAACGTTTGCATGCGACAAGTGCACAGAGAAATTTTATACAAAACGTGGCCTGCAGAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGAAGAATTCGATTCATTGGAAAAATTAAGAAACCATCGTGCGAAGCATGTAGTTGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGATACAGAATATCCAATTAATAAGGAAACTTGCGATTATGAGACAGAGGATAAAGATAGCATAGACAGGAATCACAGGATGGAAAACAAGTCAATACCAGGATTGCTGGAGACAGAAAATAATTTATCGAAGAAAAATGATAGAAACATGGAGACTCATCGTCATTCGGGGATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAAAAACACACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACAATGTAACAAAACATTTGGTAACGAACTTACTTTACGTAATCATCTTATAGCTACTAATCATAAAACTTTTCTTCATGGGCAAGAATATGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACAAAAGATTATCGATAAAATTAAAACTGAGGATGGTTTGGAAGATTTCGACGAGGAAGAGGAGAATATCGATAGAATTAATCGCGCTAATGTTACAGATAATAATTATAGTCGGAATAAGCGAGAAATATCCTCGCATAAGAGACATAATCATAAGAAAGAATTGGAATGTGCGAGCTGCAATAAAAGATGCAGTTCAAAGCAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTGGTCAAGTCGGAAAAGCAAAAGCAATCGGCAGATAAGAAAGATTGGCAAAGGGATTACGCTAATGAGGAGATGTACCACAAGGAGAACAGAGATGACGATTATGATTCGGATTTCGAAAGCGGTTTGGATTGGCCAATGGATAATCACGAGTGTCCAAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGCTCCGTCATCAATTGTTGCACGAAGAACCGAATTTCGAATGCGATATTTGCAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCTCATTATGATAAGTGTTCAGAGAAGAATCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCAAAACATGTTACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAGCCAGGCGAAAAGATTGGTAGAAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCACGAAGGAAAAAAGTATCTGTGTGATATATGTCCAAAAAAATTTTATAGAAGGGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAAGAACAGTTGACAAATCACTTGTCAAAGCATGACCGAACTTTCAAGAAGAATAAAGAAACGGACAGCTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGAAGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTGAAAATGCACATGAGAACGCATACGCAAGAACGACCGTATGTTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGTGAGGCTAAATATCATTGTAAGTATTGTCCGAAAAACTTCCGTCGTCTGAAGTCGCTCAAAGAACACGTCTTCATTCATACTGGTCAAAGACCTTATGCGTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAGAATCGTGCTCAAACACTAACCGCGCAAGTACAGGCTACACCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACAAGGACAAATAGTAAAGGCACAAAATATTAAAACCATTACTATCACTAAGCCTGAATCAGTTGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTCACGGATGTGGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACATCATAA
- Protein Sequence
- MEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSTNXXXXXXXXXXXXXXXXXXXXXXPSGESFQREDCTEYVDLLVKAADATTKQEDEDDEEEEKSDITNTPVQPDTDSQCQNETRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKVKQKEVGPEERREDERGNEAKRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGNLIKKEEQENRNVRTETFACDKCTEKFYTKRGLQKHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYPINKETCDYETEDKDSIDRNHRMENKSIPGLLETENNLSKKNDRNMETHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRANVTDNNYSRNKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQSADKKDWQRDYANEEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQATPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215850;
- 90% Identity
- iTF_00229494;
- 80% Identity
- -