Bhor009032.1
Basic Information
- Insect
- Bombus hortorum
- Gene Symbol
- -
- Assembly
- GCA_905332935.1
- Location
- HG995190.1:17477190-17480872[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 14 6.7 2.3 1 23 202 224 202 224 0.94 2 18 0.00031 0.033 14.9 1.4 2 23 259 280 258 280 0.98 3 18 0.0021 0.22 12.3 2.0 1 23 420 442 420 442 0.96 4 18 0.0031 0.33 11.8 0.3 2 23 446 467 445 467 0.96 5 18 0.17 18 6.3 3.2 1 23 540 563 540 563 0.94 6 18 0.00035 0.037 14.8 0.7 1 21 569 589 569 593 0.92 7 18 0.0013 0.14 13.0 2.9 2 23 672 693 671 693 0.95 8 18 2.3e-05 0.0024 18.5 4.1 1 23 750 772 750 772 0.97 9 18 0.00023 0.025 15.3 0.7 1 20 777 796 777 798 0.94 10 18 0.039 4.2 8.3 0.6 2 23 809 830 809 830 0.97 11 18 2.3e-05 0.0025 18.4 0.6 2 23 869 890 868 890 0.97 12 18 2.1e-05 0.0023 18.6 1.6 1 23 895 917 895 917 0.95 13 18 0.00017 0.018 15.7 2.9 1 23 923 945 923 945 0.98 14 18 3.8e-06 0.0004 20.9 0.4 1 23 961 983 961 983 0.95 15 18 3.1e-07 3.3e-05 24.4 0.6 1 23 989 1011 989 1011 0.99 16 18 1.9e-05 0.002 18.8 0.2 1 23 1017 1039 1017 1039 0.98 17 18 0.00012 0.013 16.2 4.1 1 23 1045 1067 1045 1067 0.96 18 18 0.008 0.86 10.5 0.3 1 20 1073 1092 1073 1094 0.89
Sequence Information
- Coding Sequence
- ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAGCGGGGATAACGATTGCCTTGAAAATATTTCAACGGTAGAACACGATTATATATTACAGCAAGAATGTATATTATCTAGCACGAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCGGAGAATCGTTTCAGCGGGAGGATTGCGCCGAGTACGTAGATCTATTAGTAAAAGCAGCTGATGCAACGACAAAACAAGAAGATGAGGAGGAAGACGAAGAAGAAGAAAAATCGGATATTACGAACACGGTTGTTCAGCCAGATGCAGATTCTCAGTGTCAAAATGAAACGAGGAGGAGCAAACGTAAATTAGTTCGGAAAAATTTTGAAACGAGACGAGATTCTGATGAGGAAAACTACTTTGAAAATTTGAATTTAAGCTCGAGACTGAAAAAAGGTCAGTCTTCTGATCAATCGGAAAAGATTTTTCTATGTTATCTGTGCGATAAAGAGTTTTTGTCGAAGAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAAAACGCCGGATACACCGCAAAAGAACGTTTATAATGTTGCAAAATCTCCACCATCGGGTAAGAGATCGAACAAGTGCCCGTATTGTGGCAAGCAATACATATATATAACCTCGTTTAGTAAACATTTGAAAAAACATGAAAGGGAGAAAGAAGAGGGCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGTCTAGATCTTGATAATTATAAAGATGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGTGGGTCCAGAAGAGCATAGGGAGGAAGAAAGAGGGAACGAGACGAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAAGTGGGTAATTTGATTAAAAAAGAGGAACAGGAGAATCGCAATGTCCGTACAGAAACGTTTGCATGCGACAAGTGCGAAGAGAAATTTTATACAAAACGCGGCTTACATAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCGTATGCGAAGAAGAATTCGATTCACTGGAAAAATTAAGAAACCATCGAGCGAAGCACGTAGTTGAAGGTGTTCTAACCGAACAAGAACTTGAGATGGATACAGAATATCCAATTAATAAGGAAACATGTGATTACGAGACAGAGGATAAAGATAGCATAGACAGGAATCACAAGATGGAAAACAAATCGATACAAGGACTGCTGGAAACAGAAAATAATTTATCGAAGAAAAATGATAGAAACGTGGAGACCCATCGTCATTCGGGGATTGACTATAGTTGCAAAGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAAAAACACACGGAACAGCAACATGAACGTGTGAAAACTTACAAGTGCACACAATGTAACAAAACATTTGGTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTTCTTCATGGCCAAGAATATGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACAAAAAATTATTGATAAAATTAAAACCGAGGATGGTTTAGAAGATTTCGACGAGGAAGAGGAGAATATCGATAGAATTAATCGCGCTAATGTTACAGATAATAATTATAGTCGAAATAAGCGAGAAATATCCTCGCATAAGAGACATAATCATAAGAAAGAATTGGAATGCGCGAGTTGCAATAAGAGATGCAGTTCAAAGCAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTGGTCAAGTCGGAAAAGCAAAAGCAACCGGCAGATAAGAAGGATTGGCAAAGGGACTACGCTAATGAGGAGACGTACCACAAAGAGAATAGAGATGACGATTATGATTCAGATTTCGAAAGTGGTTTGGATTGGCCAATGGATAATCACGAGTGCCCAAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGTTACGTCATCAATTGTTGCACGAAGAACCGAATTTCGAATGCGATATTTGCAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCAAAACATGTTACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAGCCGCGACCCGAGGAGAGAAAGCCAGGTGAAAAGATTGGTAGGAAGAGAAGGACTGACATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCATGAAGGAAAAAAGTATCTGTGTGATATATGTCCAAAAAAATTTTATAGAAGGGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACCAGATGCACAAAGCGTTTCATTAAAGAGGAACAATTGACAAGTCACTTGTCAAAGCATGATCGATCTTTCAAGAAGAATAAAGAAACGGACAGCTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGAAGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTAAAAATGCACATGAGAACGCATACGCAAGAACGACCGTATGTTTGTCAATATTGTTCACGAGCATTTGCCAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAGTCGCTCAAAGAACACGTCTTCATTCATACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAAAATCGTGCTCAAACACTAACCGCGCAAGTACAGGTTACGCCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACAAGGACAAATAGTAAAGGCACAAAATATTAAAACCATTACTATCACTAAACCTGAATCAGTCACCACTCAACAAACGGTCATGCAACTTCAAGAGATATTGATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACATCATAA
- Protein Sequence
- MEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHESGDNDCLENISTVEHDYILQQECILSSTNXXXXXXXXXXXXXXXXXXXXXXXXXXXSGESFQREDCAEYVDLLVKAADATTKQEDEEEDEEEEKSDITNTVVQPDADSQCQNETRRSKRKLVRKNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKVKQKEVGPEEHREEERGNETKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQVGNLIKKEEQENRNVRTETFACDKCEEKFYTKRGLHKHAISHVVLSCSVCEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYPINKETCDYETEDKDSIDRNHKMENKSIQGLLETENNLSKKNDRNVETHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRANVTDNNYSRNKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQPADKKDWQRDYANEETYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEERKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTSHLSKHDRSFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQVTPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVTTQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215850;
- 90% Identity
- iTF_00229494;
- 80% Identity
- -