Basic Information

Insect: Bombus muscorum
Gene Symbol: -
Assembly: GCA_963971185.1
Location: OZ020133.1:17616253-17619917[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.16 17 6.7 2.3 1 23 196 218 196 218 0.94

2 18 0.00037 0.041 14.9 1.4 2 23 253 274 252 274 0.98

3 18 0.0016 0.18 12.9 0.6 1 23 414 436 414 436 0.96

4 18 0.0021 0.23 12.6 0.3 2 23 440 461 439 461 0.96

5 18 0.2 22 6.3 3.2 1 23 534 557 534 557 0.94

6 18 0.00042 0.046 14.8 0.7 1 21 563 583 563 587 0.92

7 18 0.0015 0.17 13.0 2.9 2 23 666 687 665 687 0.95

8 18 2.7e-05 0.003 18.5 4.1 1 23 744 766 744 766 0.97

9 18 0.00028 0.031 15.3 0.7 1 20 771 790 771 792 0.94

10 18 0.047 5.2 8.3 0.6 2 23 803 824 803 824 0.97

11 18 2.8e-05 0.0031 18.4 0.6 2 23 863 884 862 884 0.97

12 18 2.6e-05 0.0028 18.6 1.6 1 23 889 911 889 911 0.95

13 18 0.00014 0.016 16.2 2.9 1 23 917 939 917 939 0.98

14 18 4.5e-06 0.0005 20.9 0.4 1 23 955 977 955 977 0.95

15 18 3.8e-07 4.2e-05 24.3 0.6 1 23 983 1005 983 1005 0.99

16 18 2.2e-05 0.0025 18.8 0.2 1 23 1011 1033 1011 1033 0.98

17 18 0.00015 0.016 16.2 4.1 1 23 1039 1061 1039 1061 0.96

18 18 0.0096 1.1 10.5 0.3 1 20 1067 1086 1067 1088 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.16	17	6.7	2.3	1	23	196	218	196	218	0.94
2	18	0.00037	0.041	14.9	1.4	2	23	253	274	252	274	0.98
3	18	0.0016	0.18	12.9	0.6	1	23	414	436	414	436	0.96
4	18	0.0021	0.23	12.6	0.3	2	23	440	461	439	461	0.96
5	18	0.2	22	6.3	3.2	1	23	534	557	534	557	0.94
6	18	0.00042	0.046	14.8	0.7	1	21	563	583	563	587	0.92
7	18	0.0015	0.17	13.0	2.9	2	23	666	687	665	687	0.95
8	18	2.7e-05	0.003	18.5	4.1	1	23	744	766	744	766	0.97
9	18	0.00028	0.031	15.3	0.7	1	20	771	790	771	792	0.94
10	18	0.047	5.2	8.3	0.6	2	23	803	824	803	824	0.97
11	18	2.8e-05	0.0031	18.4	0.6	2	23	863	884	862	884	0.97
12	18	2.6e-05	0.0028	18.6	1.6	1	23	889	911	889	911	0.95
13	18	0.00014	0.016	16.2	2.9	1	23	917	939	917	939	0.98
14	18	4.5e-06	0.0005	20.9	0.4	1	23	955	977	955	977	0.95
15	18	3.8e-07	4.2e-05	24.3	0.6	1	23	983	1005	983	1005	0.99
16	18	2.2e-05	0.0025	18.8	0.2	1	23	1011	1033	1011	1033	0.98
17	18	0.00015	0.016	16.2	4.1	1	23	1039	1061	1039	1061	0.96
18	18	0.0096	1.1	10.5	0.3	1	20	1067	1086	1067	1088	0.89

Sequence Information

Coding Sequence: ATGGAGGAGGTAATCGATCAAACTATCGTTACGGAACAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTgccttgaaaatatttcaacggtAGAACACGATTATATATTACAGCAAGAATGTATATTATCTAGCGCGAATGAGCAGgagcagcaacaacagcatCATGATCATCAACAACATCAACATCAACATCAACATCCCTCCGGAGAATCGTTTCAGCGGGAGGATTGTTCCGAGTACGTAGATCTATTGGTAAAAGCAGCTGATGCAACGACAAAACAAGAAGATGAGgaggaagatgaagaagaagaaaaatcggtTATTACGAACACGGTTGTTCAGCCAGATGCAGATTCTCAGTGTCAAAATGAAACGAGGAGAAGCAAACGTAAATTAGTTCGGCGAAATTTCGAAACGAGACGAGATTCCGATGAGGAaaactattttgaaaatttgaatttgagtTCGAGACTGAAAAAAGGTCAGTCCTCCGATCAATCggaaaaaatttttctatgtTATCTGTGCGACAAAGAGTTTTTGTCGAAGAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAAAACACCGGATACACCGCAAAAGAACGTTTATAATGTTACGAAGTCTCCTCCGTCGGGTAAGAGATCGAACAAGTGCCCGTATTGTGGCAagcaatacatatatataacttcGTTTAgtaaacatttgaaaaaacatgaaagggagaaagaagagGGCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAAAATAGTCTAgattttgataattataaagaTGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAGCAAAAAGAGGCGGGTCCAGAAGAGCgtagagaggaagaaagagggcACGAGACTAAAAGAGGCAATAACGGTGGCGGTGATGAtggtggcggtggcggcggtggcggcggcgaaggaggaggaggaaataacaacaataacaacaatGATGATGACGaccacgacgacgacgacgacgatgatgaCGATGACAACTACAATGACTACGACAATAAAAGACAAGTGggtaatttgattaaaaaagagGAACAGGAGAATCGCAATGTCCGTACAGAAACGTTTGCATGCGACAAGTGCGCagagaaattttatacaaaacgtGGCTTACAAAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGAAGAATTTGATTCACtggaaaaattaagaaacCATCGCGCGAAGCACGTAGTTGAAGGTGTTCTAACAGAACAAGAACTTGAGATGGATACAGAATATCCaattaataaagaaacgtGCGATTATGAGACAGAAGATAAAGATAGCATAGACAGGAATCACAGGATGGAGAACAAATCGATGTCAGGATTGTTGGagacagaaaataatttatcgaagaaaaatgacaGAAACACGGAGACCCATCGTCATTCGGGGATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAAAAACACACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACaatgtaataaaacatttggTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTTCTTCACGGTCAAGAATATGATCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACaaaaaattatcgataaaattaaaaccgAGGATGGTTTGGAAGATTTCGACGAGGAAGAGGAGAATATCGACAGAATTAATCGCGCTAATGTTACGGATAATAATTATAGTCGGAATAAGCGAGAAATATCCTCGCATAGGAGACATAATCATAAGAAAGAATTGGAATGTGCGAGCTGCAATAAAAGATGCAGTTCAAAGCAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAACAACAACGAGTAGTCAAGtcggaaaagcaaaagcaatcgATGGATAAGAAAGATTGGCAAAGAGACTATCCTAACGACGAGATGTACCACAAGGAGAATAGAGATGACGATTATGATTCGGATTTCGAAAGTGGTTTGGATTGGCCAATGGATAATCACGAGTGCCCAAAGTGTAAAAAGCGATACAGCACGAAAAAATCATTGCTCCGTCATCAATTGTTGCACGAAGAACCGAATTTCGAATGCGATATTTGTAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCAAAACATGTCACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAACCAGGTGAAAAGATTGGTAGAAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGACTTTTACGACATATTCAAGTCCACGAAGGAAAAAAGTATCTGTGTGATATATGtccaaaaaaattttatagaaggGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAGGAACAGTTGACAAATCACTTGTCAAAGCATGACCGAACTTTcaagaagaataaagaaacgGACAGCTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCTACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGATGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTGAAAATGCACATGAGAACGCATACGCAAGAACGACCGTATGTTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTCAAGTCGCTCAAAGAACACGTCTTCATTCATACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTCGTTCAGAATCAAAATCGTGCTCAAACACTAACCGCGCAAGTACAGGCTGCGCCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACAAGGACAAATAGTAAAGgcacaaaatattaaaaccatTACTATCACTAAACCTGAATCAGTCGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTGCCAGAAGGAACTAAGATATttactacgtcataa
Protein Sequence: MEEVIDQTIVTEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSANEQEQQQQHHDHQQHQHQHQHPSGESFQREDCSEYVDLLVKAADATTKQEDEEEDEEEEKSVITNTVVQPDADSQCQNETRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVTKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDENSLDFDNYKDARRHLDNEYRKKVKQKEAGPEERREEERGHETKRGNNGGGDDGGGGGGGGGEGGGGNNNNNNNDDDDHDDDDDDDDDDNYNDYDNKRQVGNLIKKEEQENRNVRTETFACDKCAEKFYTKRGLQKHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYPINKETCDYETEDKDSIDRNHRMENKSMSGLLETENNLSKKNDRNTETHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRANVTDNNYSRNKREISSHRRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQSMDKKDWQRDYPNDEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCDVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQAAPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00229494;
80% Identity: -