Basic Information

Insect: Bombus vosnesenskii
Gene Symbol: -
Assembly: GCA_011952255.1
Location: NW:1609829-1617474[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.11 7 6.6 2.3 1 23 247 269 247 269 0.94

2 18 0.00082 0.053 13.3 3.1 2 23 304 325 303 325 0.98

3 18 0.00084 0.054 13.2 0.5 1 23 465 487 465 487 0.96

4 18 0.0014 0.093 12.5 0.3 2 23 491 512 490 512 0.96

5 18 0.14 9 6.3 3.2 1 23 585 608 585 608 0.94

6 18 0.00029 0.019 14.7 0.7 1 21 614 634 614 638 0.92

7 18 0.0011 0.069 12.9 2.9 2 23 717 738 716 738 0.95

8 18 1.9e-05 0.0012 18.4 4.1 1 23 795 817 795 817 0.97

9 18 0.00019 0.013 15.3 0.7 1 20 822 841 822 843 0.94

10 18 0.033 2.1 8.2 0.6 2 23 854 875 854 875 0.97

11 18 2e-05 0.0013 18.4 0.6 2 23 914 935 913 935 0.97

12 18 1.8e-05 0.0012 18.5 1.6 1 23 940 962 940 962 0.95

13 18 0.0001 0.0065 16.2 2.9 1 23 968 990 968 990 0.98

14 18 3.2e-06 0.00021 20.9 0.4 1 23 1006 1028 1006 1028 0.95

15 18 2.6e-07 1.7e-05 24.3 0.6 1 23 1034 1056 1034 1056 0.99

16 18 1.5e-05 0.001 18.7 0.2 1 23 1062 1084 1062 1084 0.98

17 18 0.0001 0.0067 16.1 4.1 1 23 1090 1112 1090 1112 0.96

18 18 0.0067 0.44 10.4 0.3 1 20 1118 1137 1118 1139 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.11	7	6.6	2.3	1	23	247	269	247	269	0.94
2	18	0.00082	0.053	13.3	3.1	2	23	304	325	303	325	0.98
3	18	0.00084	0.054	13.2	0.5	1	23	465	487	465	487	0.96
4	18	0.0014	0.093	12.5	0.3	2	23	491	512	490	512	0.96
5	18	0.14	9	6.3	3.2	1	23	585	608	585	608	0.94
6	18	0.00029	0.019	14.7	0.7	1	21	614	634	614	638	0.92
7	18	0.0011	0.069	12.9	2.9	2	23	717	738	716	738	0.95
8	18	1.9e-05	0.0012	18.4	4.1	1	23	795	817	795	817	0.97
9	18	0.00019	0.013	15.3	0.7	1	20	822	841	822	843	0.94
10	18	0.033	2.1	8.2	0.6	2	23	854	875	854	875	0.97
11	18	2e-05	0.0013	18.4	0.6	2	23	914	935	913	935	0.97
12	18	1.8e-05	0.0012	18.5	1.6	1	23	940	962	940	962	0.95
13	18	0.0001	0.0065	16.2	2.9	1	23	968	990	968	990	0.98
14	18	3.2e-06	0.00021	20.9	0.4	1	23	1006	1028	1006	1028	0.95
15	18	2.6e-07	1.7e-05	24.3	0.6	1	23	1034	1056	1034	1056	0.99
16	18	1.5e-05	0.001	18.7	0.2	1	23	1062	1084	1062	1084	0.98
17	18	0.0001	0.0067	16.1	4.1	1	23	1090	1112	1090	1112	0.96
18	18	0.0067	0.44	10.4	0.3	1	20	1118	1137	1118	1139	0.89

Sequence Information

Coding Sequence: ATGAACGTAACTTCAGATTTACAGATATCGATATGTAAATTAGGAGCGAAGTTTGAAATCATATGTACCACGTCAATACTTGTATGCAGAAGATGCAAAACACGCATTAGTATTTGCATAGAAAGTCAGAGTGCGAAAGAACAGAACTCGAACGCGGTAATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTGccttgaaaatatttcaacggtAGAACACGATTATATATTGCAGCAGGAGTGTATATTATCTAGCACGAATGAGCAGgagcagcaacaacagcatCATCATCATCAACAACATCAACATCAACATCCCTCCGGAGAATCGTTTCAGCGGGAGGATTGCACCGAGTACGTAGATCTATTGGTAAAAGCAGCTGATGCAACGACAAAACAAGAAGATGAGGtggaagatgaagaagaagaaaaatcggatATTACGAACACGGTTGTTCAGCCAGATGCAGATTCTCAGTGTCAAAATGAAACGAGAAGAAGCAAACGTAAATTAGTTCGGCGAAATTTTGAAACGAGACGAGATTCCGACGAGGAAAactattttgaaaatttgaatttaagcTCGAGACTGAAAAAAGGTCAGTCCTCTGATCAATCGGaaaaaatttttctatgttaTCTGTGCGACAAAGAGTTTTTGTCGAAGAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAAAACACCGGATACACCGCAAAAGAACGTTTATAATGTTGCAAAGTCCCCTCCATCGGGTAAGAGATCAAACAAGTGCCCGCATTGTGGCAAgcaatacatatatataacctCGTTTAGTAAACATTTGAAAAAACatgaaagggagaaagaagagGGCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGTCTAGatcttgataattataaagaTGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGTGGGCCCAGAAGAGCatagagaggaagaaaaagggaacGAGGCGAAAAGAGGCAATAACGGTGGCggtgatggtggtggtggtggtggcggcggcggcgaaggaggaggaggagcaggaaataacaacaataacaacaatGATGATGACAaccacgacgacgacgacgacgatgacgacgatgaATACAATGACTACGACGATAAAAGACAAGTGGgtaatttgattaaaaaagaGGAACAGGAGAATCGCAATGTCCGTACAGAAACGTTTGCATGCGACAAGTGTGCagagaaattttatacaaaacgtGGCTTACAAAGGCATGCGATTTCGCATGTTGTTCTCAGTTGCAGTATATGCGAAGAAGAATTCGATTCActggaaaaattaagaaatcatCGCGCGAAACACGTGGTTGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGATGCAGAGTATTCAATTAGTAAGGAAACATGTGATTACGAGACAGAGGATAAAGATAGCATAGACAGGAATCACAGGATGGAAAACAAATCAATACCAGGATTGCtggaaacagaaaataatttatcgaagaaaaatgataGAAACATGGAGACCCATCGTCATTCGGGGATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAAAAACATACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACAATGTAACAAAACATTTGGTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTCCTTCATGGACAAGAATATGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCAcaaaaaattatcgataaaattaaaaccGAGGATGGTTTGGAAGATTTCGACGAGGAAGAGGAGAATATCGATAGAATTAATCGCGCTAATGTTACAGATAATAATTATAGTCGGAATAAGCGAGAAATATCCTCGCATAAGAGACATAATCATAAGAAGGAATTGGAATGTGCGAGTTGTAATAAAAGATGCAGTTCAAAACAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTGGTCAAGTCGGAAAAGCAAAAGCAATCGGCAGATAAGAAAGATTGGCAAAGGGACTACGCTAATGAGGAGATGTACCATAAAGAGAATAGAGATGACGATTATGATTCGGATTTTGAAAGTGGTTTGGATTGGCCAATGGATAATCACGAGTGCCCGAAGTGTAAAAAACGATACAGCACGAAAAAATCATTGTTACGTCATCAATTGTTGCACGAAGAACCAAATTTCGAATGCGATATTTGCAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCGAAACATGTTACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAGAAGAAACCAGGTGAAAAGATTGGTAGGAAGAGAAGGACTGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCACGAAGGAAAAAAGTATCTGTGTGATATATGTccaaaaaaattttatagaaggGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAGGAACAGTTGACAAATCATTTGTCAAAGCATGACCGAACTTTCAAGAAGAATAAAGAAACGGACAGCTCAAAAAGATTCCTTTGTGAAatttgttcgaaaagttttaCGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGAAGTTTGTTCGCGACCGTTCACAACTAACgcttatttgaaaatgcacATGAGAACGCATACCCAAGAACGACCGTATGTTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGCGAGGCTAAATACCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAGTCGCTCAAAGAACACGTCTTCATTCATACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAATGGAAGTCGATACGCTCATAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAAAATCGTGCTCAAACACTAACCGCGCAAGTACAGGCTACGCCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACAAGGACAAATAGTAAAGGCACAGAATATTAAAACCATTACTATCACTAAACCTGAATCAGTCGCCACTCAACAAACAGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACATCATAA
Protein Sequence: MNVTSDLQISICKLGAKFEIICTTSILVCRRCKTRISICIESQSAKEQNSNAVMEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSTNEQEQQQQHHHHQQHQHQHPSGESFQREDCTEYVDLLVKAADATTKQEDEVEDEEEEKSDITNTVVQPDADSQCQNETRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVAKSPPSGKRSNKCPHCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKVKQKEVGPEEHREEEKGNEAKRGNNGGGDGGGGGGGGGEGGGGAGNNNNNNNDDDNHDDDDDDDDDEYNDYDDKRQVGNLIKKEEQENRNVRTETFACDKCAEKFYTKRGLQRHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDAEYSISKETCDYETEDKDSIDRNHRMENKSIPGLLETENNLSKKNDRNMETHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRANVTDNNYSRNKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQSADKKDWQRDYANEEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQATPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00229494;
80% Identity: -