Basic Information

Insect: Bombus dahlbomii
Gene Symbol: -
Assembly: GCA_037178635.1
Location: CM074104.1:1688075-1691778[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.16 14 6.7 2.3 1 23 197 219 197 219 0.94

2 18 0.00037 0.034 14.9 1.4 2 23 254 275 253 275 0.98

3 18 0.00046 0.043 14.6 1.0 1 23 427 449 427 449 0.96

4 18 0.075 7 7.6 0.3 2 23 453 474 452 474 0.96

5 18 0.14 13 6.8 4.1 1 23 547 570 547 570 0.94

6 18 0.00042 0.039 14.7 0.7 1 21 576 596 576 600 0.92

7 18 0.0015 0.14 13.0 2.9 2 23 679 700 678 700 0.95

8 18 2.7e-05 0.0025 18.5 4.1 1 23 757 779 757 779 0.97

9 18 0.00028 0.026 15.3 0.7 1 20 784 803 784 805 0.94

10 18 0.047 4.4 8.3 0.6 2 23 816 837 816 837 0.97

11 18 2.8e-05 0.0026 18.4 0.6 2 23 876 897 875 897 0.97

12 18 2.6e-05 0.0024 18.6 1.6 1 23 902 924 902 924 0.95

13 18 0.00014 0.013 16.2 2.9 1 23 930 952 930 952 0.98

14 18 4.5e-06 0.00042 20.9 0.4 1 23 968 990 968 990 0.95

15 18 3.7e-07 3.4e-05 24.3 0.6 1 23 996 1018 996 1018 0.99

16 18 2.2e-05 0.0021 18.7 0.2 1 23 1024 1046 1024 1046 0.98

17 18 0.00015 0.014 16.2 4.1 1 23 1052 1074 1052 1074 0.96

18 18 0.0096 0.9 10.4 0.3 1 20 1080 1099 1080 1101 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.16	14	6.7	2.3	1	23	197	219	197	219	0.94
2	18	0.00037	0.034	14.9	1.4	2	23	254	275	253	275	0.98
3	18	0.00046	0.043	14.6	1.0	1	23	427	449	427	449	0.96
4	18	0.075	7	7.6	0.3	2	23	453	474	452	474	0.96
5	18	0.14	13	6.8	4.1	1	23	547	570	547	570	0.94
6	18	0.00042	0.039	14.7	0.7	1	21	576	596	576	600	0.92
7	18	0.0015	0.14	13.0	2.9	2	23	679	700	678	700	0.95
8	18	2.7e-05	0.0025	18.5	4.1	1	23	757	779	757	779	0.97
9	18	0.00028	0.026	15.3	0.7	1	20	784	803	784	805	0.94
10	18	0.047	4.4	8.3	0.6	2	23	816	837	816	837	0.97
11	18	2.8e-05	0.0026	18.4	0.6	2	23	876	897	875	897	0.97
12	18	2.6e-05	0.0024	18.6	1.6	1	23	902	924	902	924	0.95
13	18	0.00014	0.013	16.2	2.9	1	23	930	952	930	952	0.98
14	18	4.5e-06	0.00042	20.9	0.4	1	23	968	990	968	990	0.95
15	18	3.7e-07	3.4e-05	24.3	0.6	1	23	996	1018	996	1018	0.99
16	18	2.2e-05	0.0021	18.7	0.2	1	23	1024	1046	1024	1046	0.98
17	18	0.00015	0.014	16.2	4.1	1	23	1052	1074	1052	1074	0.96
18	18	0.0096	0.9	10.4	0.3	1	20	1080	1099	1080	1101	0.89

Sequence Information

Coding Sequence: ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGGAGAGTGCCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTgccttgaaaatatttcaacggtAGAACACGATTATATATTACAGCAAGAATGTATATTATCTAGCACGAATGAGCAggagcaacaacaacagcatcatcatcatcaacaACATCAACATCAACGTCAACATTCTCCCTCCGGAGAATCGTTTCAGCGGGAGGATTGCACCGAGTACGTAGATCTATTGGTAAAAGCAGCCGATGCAAAGACAAAACAAGAAGATGAGgaggaaaatgaagaagaagaaaaatcggatATTACGAACACGGTTGTTCAGCCGGATGCAGATTCTCAGTGTCAAAATGAAACGAGGAGAAGCAAACGTAAATTAGTTCGGCGAAATTTTGAAACGAGACGAGATTCCGATGAGGAAaactattttgaaaatttgaatttaagcTCGAGACTGAAAAAAGGTCAGTCCTCTGATCAATCggaaaaaatttttctatgttaTCTGTGCGACAAGGAGTTTTTGTCGAAGAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAAAACACCGGATACACCGCAAAAGAACGTTTATAATGTTACAAAGTCTCCTCCATCGGGTAAGAGATCGAACAAGTGCCCGTATTGTGGTAagcaatacatatatataacctCGTTTAgtaaacatttgaaaaaacatgaaagagagaaagaagagggcAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGTCTAGatcttgataattataaagaCGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGTGGGTTCAGAAGAGCatagagaggaagaaagagggaaCGAGACGAAAAGAGGCAATAACGGTGGCGgcgatggtggtggtggtgatggtggtggtggtggtggcggcggcggcggcggcggcggcggcggcgaaggaggaagaggaaataacaacaataacaacaatGATGATGACaaccacgacgacgacgacgacgacgacgatgacgatgatgacGACTACAATGACTACGACGATAAAAGACAAGTGggtaatttgattaaaaaagaGGAACAGGAGAATCGCAATGTCCGTACAGAAACGTTTGCATGCGACAAGTGCACagagaaattttatacgaaacgtGGCTTACAAAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGATGAATTCGATTCGCtggaaaaattaagaaaccaTCGCGCGAAGCACGTAGTCGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGTTACGGAATATCCAATTAATAAGGAAACGTGTGATTACGAGACAGAAGATAAAGATAGCACAGACAGGAATCACAGgatggaaaataaatcaatatcaGGATTGCTGGagacagaaaataatttatcgaagaaaaatgatagAAACATGGAGACCCATCGTCATTCGGGGATCGACTATAGTTGCAAGGTGTGTTGCCAACGATTTACAATGAAAGAAATGTTGCAAAAGCACACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACCCaatgtaataaaacatttgGTAACGAACTTACATTACGCAATCATCTTATAGCTACTAATCATAAAACTTTTCTTCATGGGCAAGAATATGATCCTAATAAACGTATTAAAAGAGTTGCTGCTAGAGCTGcacaaaaaattattgataaaattaaaaccgAGGATGGTTTGGAAGATTTCGACGAGGAAGAGGAGAATATCGATAGAATTAATCGCGCTAATGTTACAGATAACAATTATAGTCGGAATAAGCGAGAAATATCCTCGCATAAGAGACATAATCATAAGAAAGAATTGGAATGTGCGAGCTGCAATAAAAGATGCAGTTCAAAGCAACTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTAGTCAAGTCGGAAAAGCAAAAGCAATCGACAGATAAGAAAGATTGGCAAAGAGACTATTCTAATGATGAGATGTACCACAAGGAGAACAGAGACGACGATTATGATTCGGATTTCGAAAGTGGTTTGGATTGGCCAATGGATAATCACGAGTGCCCAAAGTGTAAGAAACGATACAGCACGAAAAAATCATTGCTCCGTCATCAATTGTTGCACGAAGAGCCGAATTTCGAATGCGATATTTGTAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCAAAACATGTTACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAACCAGGTGAAAAGATTGGTAGAAAGAGAAGGACCGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCACGAAGGAAAAAAGTATCTGTGTGATATATGtccaaaaaaattttatagaaggGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAAGAACAGTTGACAAATCACTTGTCGAAGCATGACCGAACTTTcaagaagaataaagaaacggACAGCTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGAAGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTGAAAATGCACATGAGAACGCATACGCAGGAACGACCGTATGTTTGTCAATATTGTTCACGAGCGTTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAGTCGCTCAAAGAACACGTCTTTATTCACACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAAAATCGCGCTCAAACACTAACCGCGCAAGTACAGGCTGCACCTCAAAATCAACAAAGAGTGCTACAACAGACTACTCTTGAACAAGGACAAATAGTAAAGGCACAGAATATTAAAACCATTACTATCACTAAACCTGAATCAGTCGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTGCCAGAAGgaactaaaatatttactacatCATAA
Protein Sequence: MEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSTNEQEQQQQHHHHQQHQHQRQHSPSGESFQREDCTEYVDLLVKAADAKTKQEDEEENEEEEKSDITNTVVQPDADSQCQNETRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVTKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKVKQKEVGSEEHREEERGNETKRGNNGGGDGGGGDGGGGGGGGGGGGGGGEGGRGNNNNNNNDDDNHDDDDDDDDDDDDDYNDYDDKRQVGNLIKKEEQENRNVRTETFACDKCTEKFYTKRGLQKHAISHVVLSCSICEDEFDSLEKLRNHRAKHVVEGVLTEQELEMVTEYPINKETCDYETEDKDSTDRNHRMENKSISGLLETENNLSKKNDRNMETHRHSGIDYSCKVCCQRFTMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRANVTDNNYSRNKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQSTDKKDWQRDYSNDEMYHKENRDDDYDSDFESGLDWPMDNHECPKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTAQVQAAPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00229494;
80% Identity: -