Basic Information

Insect: Bombus polaris
Gene Symbol: -
Assembly: GCA_014737335.1
Location: JACXIO010000144.1:1595097-1598740[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.13 14 6.7 2.3 1 23 194 216 194 216 0.94

2 18 0.00032 0.033 14.9 1.4 2 23 251 272 250 272 0.98

3 18 0.0014 0.14 12.9 0.6 1 23 407 429 407 429 0.96

4 18 0.0018 0.18 12.6 0.3 2 23 433 454 432 454 0.96

5 18 0.17 17 6.3 3.2 1 23 527 550 527 550 0.94

6 18 0.00036 0.037 14.8 0.7 1 21 556 576 556 580 0.92

7 18 0.0013 0.13 13.0 2.9 2 23 659 680 658 680 0.95

8 18 2.7e-05 0.0028 18.3 3.7 1 23 737 759 737 759 0.97

9 18 0.00024 0.024 15.3 0.7 1 20 764 783 764 785 0.94

10 18 0.041 4.1 8.3 0.6 2 23 796 817 796 817 0.97

11 18 2.4e-05 0.0025 18.4 0.6 2 23 856 877 855 877 0.97

12 18 2.2e-05 0.0023 18.6 1.6 1 23 882 904 882 904 0.95

13 18 0.00012 0.013 16.2 2.9 1 23 910 932 910 932 0.98

14 18 3.9e-06 0.0004 20.9 0.4 1 23 948 970 948 970 0.95

15 18 3.2e-07 3.2e-05 24.4 0.6 1 23 976 998 976 998 0.99

16 18 1.9e-05 0.002 18.8 0.2 1 23 1004 1026 1004 1026 0.98

17 18 0.00013 0.013 16.2 4.1 1 23 1032 1054 1032 1054 0.96

18 18 0.0083 0.85 10.5 0.3 1 20 1060 1079 1060 1081 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.13	14	6.7	2.3	1	23	194	216	194	216	0.94
2	18	0.00032	0.033	14.9	1.4	2	23	251	272	250	272	0.98
3	18	0.0014	0.14	12.9	0.6	1	23	407	429	407	429	0.96
4	18	0.0018	0.18	12.6	0.3	2	23	433	454	432	454	0.96
5	18	0.17	17	6.3	3.2	1	23	527	550	527	550	0.94
6	18	0.00036	0.037	14.8	0.7	1	21	556	576	556	580	0.92
7	18	0.0013	0.13	13.0	2.9	2	23	659	680	658	680	0.95
8	18	2.7e-05	0.0028	18.3	3.7	1	23	737	759	737	759	0.97
9	18	0.00024	0.024	15.3	0.7	1	20	764	783	764	785	0.94
10	18	0.041	4.1	8.3	0.6	2	23	796	817	796	817	0.97
11	18	2.4e-05	0.0025	18.4	0.6	2	23	856	877	855	877	0.97
12	18	2.2e-05	0.0023	18.6	1.6	1	23	882	904	882	904	0.95
13	18	0.00012	0.013	16.2	2.9	1	23	910	932	910	932	0.98
14	18	3.9e-06	0.0004	20.9	0.4	1	23	948	970	948	970	0.95
15	18	3.2e-07	3.2e-05	24.4	0.6	1	23	976	998	976	998	0.99
16	18	1.9e-05	0.002	18.8	0.2	1	23	1004	1026	1004	1026	0.98
17	18	0.00013	0.013	16.2	4.1	1	23	1032	1054	1032	1054	0.96
18	18	0.0083	0.85	10.5	0.3	1	20	1060	1079	1060	1081	0.89

Sequence Information

Coding Sequence: ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGGAGAGTGTCTGAGTCATGAAGAAGAGGACATTAAAGTAATCATAGATGCTCCCATTAACGAAGAAATGTTAAAACACGAAAATGGGGATAATGATTGCCTTGAAAATATTTCAACGGTAGAACACGATTATATATTGCAGCAAGAATGTATATTATCTAGCACGAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCGGAGAATCGTTTCAGCGGGAGGATTGCACTGAATACGTAGATCTATTAGTAAAAGCAGCTGATGCAACGACAAAACAAGAAGATGAGGAGGAAGATGAAGAAGAAGAAAAATCGGATATTACGAACACAGTTGTTCAGCCAGATGCAGATTCTCAGTGTCAAAATGAAACGAGGAGAAGCAAACGTAAATTAGTTCGGCGAAATTTTGAAACGAGACGAGATTCCGACGAGGAAAACTATTTTGAAAATTTGAATTTAAGCTCGAGACTGAAGAAAGGTCAGTCCTCTGATCAATCGGAAAAAATTTTTCTATGTTATCTGTGCGACAAAGAGTTTTTGTCGAAAAATGTTTTGAAGGAGCATATGCATTCTCACGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAAAACACCGGATACACCGCAAAAGAACGTTTATAATGTTGCAAAGTCTCCTCCATCGGGTAAGAGATCAAACAAGTGCCCGTATTGTGGCAAGCAATACATATATATAACCTCGTTTAGTAAACATTTGAAAAAACATGAAAGGGAGAAAGAAGAGGGCAAGGAAGAATCAATGCCCTTAGAAATATCATTCCACGAAGACGAACATAGTCTAGATCTTGATAATTATAAAGATGCACGTCGGCATTTGGATAACGAGTATCGGAAAAAAGTCAAACAAAAAGAGGTGGGTCCAGAAGAACATAGAGAGGAAGAAAGAGGGAACGAGGTTAAAAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGTAATTTGATTAAAAAAGAGGAACAGGAGAATCGCAATGTCCGTACAGAAACGTTTGCATGCGACAAGTGCGCAGAGAAATTTTATACAAAACGTGGCTTACAAAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGAAGAATTCGATTCACTGGAAAAATTAAGAAACCATCGCGCGAAGCACGTGGTTGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGACACAGAGTATCCAGTTAATAAGGAAACGTGTGATTACGAGACAGAGGATAAAGATAGCGTAGACAGGAATCACAGGATGGAAAACAAATCAATACCAGGATTGCTGGAAACAGAAAATAATTTATCGAAGAAAAATGATAGAAACATGGAGACCCATCGTCATTCGGGGATTGACTATAGTTGCAAGGTGTGTTGCCAACGATTTGCAATGAAAGAAATGTTGCAAAAACACACGGAACAGCAACATGAACGTGTAAAAACTTACAAGTGCACACAATGTAACAAAACATTTGGTAACGAACTTACTTTACGCAATCATCTTATAGCTACTAATCATAAAACTTTCCTTCATGGGCAAGAATATGACCCTAATAAACGTATTAAAAGGGTTGCTGCGAGAGCTGCACAAAAAATTATCGATAAAATTAAAACCGAGGATGGTTTGGAAGATTTCGACGAGGAAGAGGAGAATATCGATAGAATTAATCGCGCTAATGTTACAGATAATAATTATAGTCGGAATAAGCGAGAAATATCCTCACATAAGAGACATAATCATAAGAAAGAATTGGAATGTGCGAGTTGCAATAAAAGATGCAGTTCAAAGCAATTGTTAACAAAACATATGGAGCAACATGTAAAAGACGAGCAACAACGAGTGGTCAAGTCGGAAAAGCAAAAGCAATCGGCAGATAAGAAAGATTGGCAAAGGGACTACGCTAATGAGGAGATGTACCATAAAGAGAATAGAGATGACGATTATGATTCGGATTTTGAAAGTGGTTTAGATTGGCCAATGGATAATCACGAGTGCCCACAGTGTAAAAAACGATACAGCACGAAAAAATCATTGTTACGTCATCAATTGTTGCATGAAGATCCGAATTTCGAATGCGATATTTGCAATGTTAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAATATCTGCGGAGACACGTTTGAGAACAATGAGATTCTGCGAGAACATAGATCGAAACATGTTACCGAAGGCATTCTTACGGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAGAAAAAACCAGGTGAAAAAATTGGTAGGAAAAGAAGGACAGATATCGTAGGTTTAGAGTGCACGGAATGTAACAAGCAATATACATCGAGAAAAGGGCTTTTACGACATATTCAAGTCCACGAAGGAAAAAAGTATCTGTGTGATATATGTCCAAAAAAATTTTATAGAAGGGAACATTTAAAGATACACGTAGCTAAACATAACATGATTAAGCCATATAAGTGCACACGATGCACAAAGCGTTTCATTAAAGAGGAACAGTTGACAAATCATTTGTCAAAGCATGATCGAACTTTCAAGAAGAATAAAGAAACGGACAGCTCGAAAAGATTCCTTTGCGAAATTTGCTCGAAAAGTTTTACGCAATCGACGACGTTGATTGCACACCTTCGAGCACATAATGGTATAAAACCATACGTTTGCGAAGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTGAAAATGCACATGAGAACGCATACGCAAGAACGACCGTATGTTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACAGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAGTCGCTCAAAGAACACGTCTTCATTCATACTGGTCAAAGACCTTATGCCTGTCCAACCTGCGATAGACGGTTTAACAACAACGGAAGTCGATATGCTCACAGTAAAAGGTGTAAACAAACTTTTGTTCAGAATCAAAATCGTGCTCAAACACTAACCACGCAAGTACAGGCTGCGCCTCAAAATCAACAAAGAGTGCTACAACAAACTACTCTTGAACAAGGACAAATAGTAAAGGCACAAAATATTAAAACCATTACTATCACTAAACCTGAATCAGTCGCCACTCAACAAACGGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACATCATAA
Protein Sequence: MEEVIDQTIATEQTSGECLSHEEEDIKVIIDAPINEEMLKHENGDNDCLENISTVEHDYILQQECILSSTNXXXXXXXXXXXXXXXXXXXSGESFQREDCTEYVDLLVKAADATTKQEDEEEDEEEEKSDITNTVVQPDADSQCQNETRRSKRKLVRRNFETRRDSDEENYFENLNLSSRLKKGQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKKTPDTPQKNVYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDNYKDARRHLDNEYRKKVKQKEVGPEEHREEERGNEVKRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGNLIKKEEQENRNVRTETFACDKCAEKFYTKRGLQKHAISHVVLSCSICEEEFDSLEKLRNHRAKHVVEGVLTEQELEMDTEYPVNKETCDYETEDKDSVDRNHRMENKSIPGLLETENNLSKKNDRNMETHRHSGIDYSCKVCCQRFAMKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFDEEEENIDRINRANVTDNNYSRNKREISSHKRHNHKKELECASCNKRCSSKQLLTKHMEQHVKDEQQRVVKSEKQKQSADKKDWQRDYANEEMYHKENRDDDYDSDFESGLDWPMDNHECPQCKKRYSTKKSLLRHQLLHEDPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQTLTTQVQAAPQNQQRVLQQTTLEQGQIVKAQNIKTITITKPESVATQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00229494;
80% Identity: -