Tcor005585.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachymyrmex cornetzi
Gene Symbol
-
Assembly
GCA_001594075.1
Location
NW:680670-684251[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 3.4 2.4e+02 2.0 0.1 2 15 122 134 121 141 0.74
2 14 0.00036 0.025 14.5 1.4 2 20 149 167 148 170 0.94
3 14 0.018 1.3 9.1 1.6 1 23 176 199 176 199 0.92
4 14 9.7e-06 0.00067 19.4 1.5 1 23 207 229 207 229 0.98
5 14 8.7e-06 0.0006 19.6 0.8 1 23 389 411 389 411 0.97
6 14 0.00015 0.011 15.6 0.4 2 22 422 442 421 442 0.93
7 14 0.00024 0.017 15.0 2.6 1 20 464 483 464 486 0.92
8 14 0.015 1 9.4 0.5 1 23 491 514 491 514 0.95
9 14 4.6e-06 0.00032 20.4 0.2 1 23 520 542 520 542 0.98
10 14 0.00012 0.008 16.0 2.2 1 23 549 571 549 571 0.99
11 14 6e-05 0.0041 16.9 0.4 3 23 579 599 577 599 0.97
12 14 0.00032 0.022 14.6 0.2 1 23 605 628 605 628 0.96
13 14 0.15 10 6.2 0.2 1 23 641 663 641 663 0.94
14 14 9e-05 0.0062 16.4 0.2 1 23 913 935 913 935 0.98

Sequence Information

Coding Sequence
ATGGAGACTCACGAGACAGAACATTACGTGACGTTTCCCCTTGGTGAAGTACATGATGCCATAGAGGAAAACATGATATCTCACGAGGAGATATGCGAGCAAGTCGACGAATGTGTTCTCCAGGAAGGCCTTACAGAGGTCACGGTCAGTAATACTGCTAGTACTGACATCGTAGAGTCGCAAGGTACCGTCGAGATCCTTGCGGAACAGTCGGAAGAGGAGGACGATACTCAGGTAGTATATCCGATGTACATCAAGCAGGAGGAACAGCAGCAGTATACATCAGGCGACGACGAATCCATGGCTGTGGAAGCTCTACGTCAACTGGGTGGTATGTATCCATGCTTTGAGGACAAGAAGATCAGTTGCCCGGTCTGTAAACATCTCTTTACCCAAGAAGAAATAGTTGAACATCAAACTGTATGTCAGTCAACATCCAAGCTATCTTGCACCACTTGTGGAGAGAGATTTGAAAGAAAGATTGATTTGAATAATCATATGGTTTGCCATCAAGTGGACCGTCCTCATGCATGCAGAACATGTGGTAACTTGTTTCGTTCCAAGCAGAGTTTGCAATCGCATACGATACAGGCACACACGCAACACGTTGAACGACCACACAAATGTACCATTTGTGGCTCGGACTTCCAGAGGCCTTCCAGTTTGTCCAATCACATGAAGATACACACGTATGTTGCGGGACGAGCCATCATGCAGTCTCAGAGTAATAATATATCACAGCCAGCGGAGACATTCAGAAAATGGCCAGAAAATCCGCCTGATTCACAGAACACTTCTCAGGTGGTATTATCCTCTTCATCTGTCGAATCTGTACAAAACTATGATGTATGTCAAGTTCAATGGCCGGTCTCGTCATACAATTTTAATAGCGGACAATCGATAGTTACCACAATGCCGAGTCAGGATACCAAGATGGATACGCTGCAAGAGTTTACAGTGATGCCCAATGGTGAAATGACGCAATTTAGCGAGTATACCGAGcaaaataatatcaatgatTCCGTAAATAACAGTCAACAGTATAACATAACGATAAATTCGTTCAACACTCCCGATGGGATAGTCAAAGTCGAGACACTTTACAGATGCGATAATGCGAATAAACAAGATTACGCAGAAGCCGAAATGAATAATAGCAAGCAGTACATATGTAAGCATTGCGGAATGAAATTTTCCCGTGCGACCGCTTTGGCATCTCACGAAAAGATTCATGCTTCGAAGAACAACTGGAATATGCCGATCGAATGCGAGTACTGTGACAAACAATTTCAGGACGAGAATCACTTGACGACCCATCAAATCACCTGCACCAAGAAAATAATGCAAAACAACATCGAACAAGGTGTGTCTAACAATAAATGGGGTAAGCACGCTTGTTCGGAATGCGGAAAGAAATTCACGACCAAGCAGAAGATGTTTCGCCACCAGTGGATTCATCGCAAGAAGACTCACTCGTGCGAGGTGTGCGGCTCGCAGTTTGAGAAGCAGAACGAGCTGGACGAGCACAGATTGTCGGTACATCCTGGAGATTCGCCATTTACTTGCATGGAATGCGGAAAAAGCTTCGTGTCGCGACAGGGTCTTTGGGAACACGGTAGAACGCACGCTGGAAGTCCAGCCCATTTTCAATGTGATACCTGTTCGAAAACGTTCTCGTCTCGTCAGGGGTACTTAATACACAATCGTACACATACTGGTGAACGACCGTACGGCTGCAAATATTGCTGGAAGGCGTTTCGAGACGGTGGAACTCTGAGGAAGCACGAGCGAATTCACACAGGGGAGAGACCGCACGTGTGTCCATTGTGCTCGAGGGCTTTCAATCAGAAGGTAGTCCTGCGCGAACATGTTCGATGGGTTCACGCAGCGGGGAAAAACGAAACGGAAGGAAGTCCTCCGTACCAGTGTCCGCTTTGCGGTGCTCTGAATCAGGATCGCGACGAACTCTGCGCGCACATCGTCAAGCATTCGGATCAGATGATAGCTGAAGCAAAGGCGAAAACTAATAGCGACGCCTCTCCAAAGTCGAAATCAGTAAAGAAAAAGTCGTCAAAGTCATCATCGTGTAACGTGAACACACAAACGGAGCAGAATTTGGACTTTATGCAGAAAGCGGAGCAAAACGAAGCCTTATTGTCCATCACGGATACAGCTGATAAATCGGATGATATGCATGATATAAACGAGAAGCAAAACAACGCGTATGTTGTAGTTGCCGCAGAAAAACGTAGTGATGGCTATATAGAAATAGCCGAGCTCAAGCATAGCAATATACGATTTATCGTTGATGGCAAAGAAGATGAGAATATCCAGGTACTCCAAGTAGAACAGGATCAGACAGATCCTCTCGATATTGCTATAGACAAGCAAAACGACGCAACGAACATTATGTCCGCAGAATCTGATACATTCGATGAAACAGTCGGGCAGAATGATATGCCCACGATACATTTGATTGAGTCTAAACAGGACAACACTCTAAATATAATATCGAAGCAGAACGAATCGCTACCCGTTCTAGCGATACCAAATCCGCAGGGTCATGAGAATTATTCCAGTCAAATCGTACAGATAAGTGGCGCAGATATGTCTATGGACGTTGAAACtctgaaagagagaaagaactgTATTAAAAATGAGCAAAGTTCTTTAATACCGGACGAAACATCACATGTTATTATACAGTATCATCACGACAGCGATGATGGAGACGATTTTATTTGCGAAATCTGCGAAGAAAGATTTGAAGGCAAAACTACATTGAAGGAACACATCAAGatacacatataa
Protein Sequence
METHETEHYVTFPLGEVHDAIEENMISHEEICEQVDECVLQEGLTEVTVSNTASTDIVESQGTVEILAEQSEEEDDTQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKISCPVCKHLFTQEEIVEHQTVCQSTSKLSCTTCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKQSLQSHTIQAHTQHVERPHKCTICGSDFQRPSSLSNHMKIHTYVAGRAIMQSQSNNISQPAETFRKWPENPPDSQNTSQVVLSSSSVESVQNYDVCQVQWPVSSYNFNSGQSIVTTMPSQDTKMDTLQEFTVMPNGEMTQFSEYTEQNNINDSVNNSQQYNITINSFNTPDGIVKVETLYRCDNANKQDYAEAEMNNSKQYICKHCGMKFSRATALASHEKIHASKNNWNMPIECEYCDKQFQDENHLTTHQITCTKKIMQNNIEQGVSNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSVHPGDSPFTCMECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKYCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEGSPPYQCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNSDASPKSKSVKKKSSKSSSCNVNTQTEQNLDFMQKAEQNEALLSITDTADKSDDMHDINEKQNNAYVVVAAEKRSDGYIEIAELKHSNIRFIVDGKEDENIQVLQVEQDQTDPLDIAIDKQNDATNIMSAESDTFDETVGQNDMPTIHLIESKQDNTLNIISKQNESLPVLAIPNPQGHENYSSQIVQISGADMSMDVETLKERKNCIKNEQSSLIPDETSHVIIQYHHDSDDGDDFICEICEERFEGKTTLKEHIKIHI