Lpla035221.1
Basic Information
- Insect
- Lasius platythorax
- Gene Symbol
- -
- Assembly
- GCA_963971435.1
- Location
- OZ020545.1:2270799-2273636[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.6 7.3e+02 2.5 0.3 3 19 123 138 121 141 0.74 2 14 0.00031 0.062 15.3 1.0 2 20 148 166 147 169 0.95 3 14 0.0018 0.35 12.9 2.8 1 23 175 198 175 198 0.93 4 14 3.2e-06 0.00064 21.5 1.2 1 23 204 226 204 226 0.98 5 14 2.7e-05 0.0054 18.6 0.4 1 23 385 407 385 407 0.97 6 14 0.00033 0.066 15.2 0.6 2 21 417 436 416 437 0.93 7 14 0.00038 0.076 15.0 2.6 1 20 459 478 459 481 0.92 8 14 0.023 4.6 9.4 0.5 1 23 486 509 486 509 0.95 9 14 1.9e-06 0.00037 22.3 0.3 1 23 515 537 515 537 0.98 10 14 0.00018 0.037 16.0 2.2 1 23 544 566 544 566 0.99 11 14 0.00045 0.09 14.8 0.4 3 23 574 594 572 594 0.97 12 14 0.00051 0.1 14.6 0.2 1 23 600 623 600 623 0.96 13 14 0.82 1.6e+02 4.5 0.1 1 23 637 659 637 659 0.92 14 14 4.6e-06 0.00091 21.1 0.2 1 23 922 944 922 944 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTCACGAGAGCGAACAGTACGTGACGTTTCCTCTCGACGGTGTGCATGATGCCATACAAGAGAATATAATATCTCACGAGGAGATATGCGAACCTGTCGACGAATGCGTCCTGCAGGAGGAGCTTGCGGAAGTCCCGGTTAGTAACGCTAATAATACTGATATTGCTGAGTCACAAGATACCGCTGAAATTCTTACGGAACAGTCGGACGAAGAGGATGACAATCAGGTGGTGTATCCGATGTACATCAAGCAAGAGGAGCAGCAGCAGTACACGTCGGGTGACGATGAGTCCATGGCTGTGGAAGCTTTGCGTCAACTGGGTGGTATGTATCCATGCTTCGAAAACAAGAAAATCAACTGTCCAATCTGTAAGTGTCTCTTTACCCAAGAAGAGATGGTTGAACATCGGTCTGTATGTACAACGTCTAAGCTATCCTGCACCGTTTGCGGAGAGAGATTTGAGAGGAAGATCGACCTGAATAATCATATGGTATGTCATCAGGTGGATCGTCCTCACGCATGTAGGACATGcggtaatttattttgttctaaGAGCAGTTTACAAGCACACATGCTGCAGGTACATCAGGTCGAACGTCCGCACAAATGCACCATCTGTGGCTTGGACTTTCAGAGGCCCTCCAGCTTGTCTAACCACATgaagatacatacatacatcgcGGGACGAGCGATCATGCCGTCACAGGGAAACAATATGTCTCAATCAGCGGAAACGTTCAAGAAGTGGCCGGAGAACGCGTCCGATTCGCAAAATACATCTCAGATGccatcttcttcttcgtctgtTCAATCTATACAGAATTATGATGTGTGTCAAGTTCAGTGGCCGGTCTCGTCATACAATTTTCATAACGAACAATCGACAGTTACCACAATATCGAATCATCAGGAGAAGATGGATACGCTGCAGGAATTCACTGTAATGCCTAACGGTGAGGTGACGCAATTCAACGAGTACACTGAGCAAAATAATATCGGTAATCCAGTCAACAACAGTCAACAATAcgatatatcgataaattCGTTCAATACCCCCGACGGAATAGTCAAAGTCGAGACGCTTTCGTATAATAACGcgaacagaaaaaattatgtagaagTCGAAACGAACAGCAGTAAACAGTACGCGTGCAAGCATTGCGGAATCAATTTTTCACGCGCGACTGCGTTGGCGTCCCACGAGAAGATACACACTTCCAAAAACTGGAACATGCCGATCGAGTGCGAGTACTGCGACAAGCAGTTTCAAGACAGGAATCACTTGGCGACCCATCAGACCACCTGCGCCAAGAAGATAATGCAGAACAACATAGAGCAAGGCGTGCCCAACAACAAGTGGAGCAAGCACGCTTGTTCCGAGTGCGGAAAGAAGTTCACGACCAAGCAGAAGATGTTTCGTCATCAGTGGATCCACCGGAAGAAGACGCACTCGTGCGAAGTATGCGGTTCGCAGTTTGAGAAGCAGAACGAGCTGGATGAGCATAGATTGTCGGCGCATCCCGGAGATTCGCCGTTCACTTGCTCCGAATGCGGAAAGAGCTTCGTGTCGCGGCAAGGTCTCTGGGAACACGGTAGAACGCACGCGGGGAGTCCGGCGCATTTTCAATGCGACACCTGCTCGAAAACCTTTTCGTCTCGCCAGGGATATTTAATACACAATCGTACGCATACCGGCGAACGACCGTACGGCTGCAAGTTTTGCTGGAAAGCGTTTCGGGACGGCGGGACCTTGAGGAAGCACGAACGGATCCACACCGGGGAGCGACCGCACGTATGTCCGTTATGCTCGAGGGCTTTCAATCAGAAAGTAGTCTTGCGCGAACATGTTCGGTGGGTCCACGCCGCGGGAAAGAACGAGACGGAAGCTAGCAGTCCTCCGTTTCCTTGTCCCCTGTGCGGTGCTCTGAATCAAGATCGCGACGAGCTCTGCGCGCACATCGTTAAGCATTCGGATCAGATGATAGCCGAGGCAAAGGCGAAGACTAACAACGACGCCTCTCCAAAGTCGAAGCCAACGAAGAAGAAGTCGTCGAAGTCGACGTCGTCGTGCAATACTAGGGCGAAGCAAACTGCCTTGGAGCATTTCATCTCCAAGACGGAACAAAATGAAGCCTTATTATCCATCACCGATACGTCCGATAAATCGGACGATTTGCACGTTATGAACGAGAAGCAGAATAACGCCTTCGTCGTGGTCACCACGGAGAAACGTAGCGACGGCTTCATAGCGATATCCGAGCTTAAGCACAGCAACATACGGTTCATCGTGGAAGGCAAGGGAAACGAGAACATTCACGTACTCCAAGTGGATCAGAATTCTCACCGGAATTCTCTCGATATGATTGCTATGGATAAGCAGAACGACGCGGCGCACATCGTGTCGACAGAATCCATGGACAATGCGCTTGATGAAACGATCAGACAAAACAATATATCCACGATGCACTTAATTCAATCTTCTAAACAGAATAATactctaaatataatatcgaaacaGAACGAATCGCTGCCTGTTCTAGCGATACCGAATCCCCAGAGCCACGAAAATTACTCCAGCCAGATAATACAAGTGAGCAGTACGGATATACCTATGGACGTAATGACTCAGCAAACCttaaaagaggaaagagatCAAGATGAGCAGGATACTTTGGTAGGAACATCTCAGGAAGGGGCATCTCATGTTATCCAAGTTGTACAGTATCATCAGCATGACAGCGACGACGGAGAGGATTTTACTTGCGAGATCTGCGAAGAAACTTTTGCTGACAAAAATATGTTGAAAGAACATATTAAGGTTCACATATAA
- Protein Sequence
- METHESEQYVTFPLDGVHDAIQENIISHEEICEPVDECVLQEELAEVPVSNANNTDIAESQDTAEILTEQSDEEDDNQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFENKKINCPICKCLFTQEEMVEHRSVCTTSKLSCTVCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFCSKSSLQAHMLQVHQVERPHKCTICGLDFQRPSSLSNHMKIHTYIAGRAIMPSQGNNMSQSAETFKKWPENASDSQNTSQMPSSSSSVQSIQNYDVCQVQWPVSSYNFHNEQSTVTTISNHQEKMDTLQEFTVMPNGEVTQFNEYTEQNNIGNPVNNSQQYDISINSFNTPDGIVKVETLSYNNANRKNYVEVETNSSKQYACKHCGINFSRATALASHEKIHTSKNWNMPIECEYCDKQFQDRNHLATHQTTCAKKIMQNNIEQGVPNNKWSKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCSECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASSPPFPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNDASPKSKPTKKKSSKSTSSCNTRAKQTALEHFISKTEQNEALLSITDTSDKSDDLHVMNEKQNNAFVVVTTEKRSDGFIAISELKHSNIRFIVEGKGNENIHVLQVDQNSHRNSLDMIAMDKQNDAAHIVSTESMDNALDETIRQNNISTMHLIQSSKQNNTLNIISKQNESLPVLAIPNPQSHENYSSQIIQVSSTDIPMDVMTQQTLKEERDQDEQDTLVGTSQEGASHVIQVVQYHQHDSDDGEDFTCEICEETFADKNMLKEHIKVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476432;
- 90% Identity
- iTF_00729521;
- 80% Identity
- -