Tsim011681.1
Basic Information
- Insect
- Tetramorium simillimum
- Gene Symbol
- -
- Assembly
- GCA_011636635.1
- Location
- VBVQ01000509.1:17688-20513[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8 2.1e+02 3.2 0.1 2 20 123 140 122 142 0.78 2 14 0.00058 0.069 14.2 1.5 2 20 150 168 149 171 0.94 3 14 0.00027 0.032 15.2 1.1 1 23 177 200 177 200 0.94 4 14 1.3e-05 0.0015 19.4 1.5 1 23 208 230 208 230 0.98 5 14 8.6e-06 0.001 20.0 0.7 1 23 390 412 390 412 0.98 6 14 0.0035 0.41 11.7 0.3 2 21 422 441 421 442 0.93 7 14 0.00032 0.037 15.0 2.6 1 20 464 483 464 486 0.92 8 14 0.019 2.2 9.4 0.5 1 23 491 514 491 514 0.95 9 14 9e-07 0.00011 23.0 0.3 1 23 520 542 520 542 0.98 10 14 0.00015 0.018 16.0 2.2 1 23 549 571 549 571 0.99 11 14 0.00037 0.044 14.8 0.4 3 23 579 599 577 599 0.97 12 14 0.00043 0.05 14.6 0.2 1 23 605 628 605 628 0.96 13 14 0.02 2.4 9.3 0.2 1 23 642 664 642 664 0.97 14 14 0.00011 0.013 16.5 0.1 1 23 918 940 918 940 0.98
Sequence Information
- Coding Sequence
- ATGGAGGCCCACGAGGGAGAGCAATATGTGACATTTCCCCTCACGGAGGTGCACGACGTCATAGAGGAGAACATGATATCTCACGAGGAGATATGCGAGCCTGTCGACGAGTGCGTTCTCCAGGAGGGCCTTACGGAAGTCACGGTCGGTAACACGGCCAGTGGTGACATCGTGGAGTCGCAAGGCACCGTCGAGATTCTTGCTGAgcaggaagaggaggaggaggacgacACGCAGGTGGTGTATCCGATGTACATCAAACAGGAGGAACAGCAGCAGTACACATCGGGTGACGACGAATCCATGGCCGTCGAAGCTCTGCGCCAGCTGGGCGGCATGTACCCATGCTTCGAGAACAAGAAGATTAGTTGCCCAGTCTGCAAGCATCTCTTTACCCAAGAGGAAATGGTTGAACATCAGTCTGTGTGTCAGGCGTCGCCTAAGCTATCCTGCACCACTTGCGGGGAGAAGTTTGAAAGGAAGATTGATCTGAACAATCACATGGTTTGCCATCAAGTGGATCGTCCTCATGCATGCAGAACGTGCGGCAACTTGTTCCGTTCCAAGAGCAGTTTGCAAGCACACATGCTACAAGCACACATGCATCACGTCGAACGACCGCACAAATGTACCATCTGTGGCTCGGACTTTCAGAGGCCGTCCAGCTTGTCCAACCACATGAAGATACACACATACGTCGCGGGACGTGCCCTCATGCAATCACAGAGCAATAACACATCTCAGTCGGTGGAAACTTTTAGGAAATGGCCGGAAAACGCGTCGGATTCGCAGAATGCTTCTCAGATACCATCTTCTTCATCTGTCCAGTCTATACAGAATTACGACGTGTGTCAAGTTCAATGGCCGGTCTCGTCATACAATTTCCAAAGTGAACAATCAATAGTTACTACAATGTCGAATCACCAGGATACCAAGATGGATACGCTGCAAGAGTTTACAGTAATGCCCAATGGTGAAGTGACGCAGTTTACCGAGTACACTGagcaaaataatatcaatgatTCAGTTAATAACAGTCAACAGTATGATATAACGATAAACTCATTCAACACTCCCGACGGGATAGTCAAAGTCGAGACGCTTTTCAGATATAATAATGCGAATAAGAGAGATTACGGAGAAGCTGAAGTGAACAACAGTAAGCAATACACGTGTAAGCATTGCGGAATCAATTTTTCACGCGCGACCGCGTTGGCGTCTCACGAGAAGATTCACGCTTCCAAGAACTGGAATATGCCGATCGAGTGCGAGTACTGCGATAAGCAGTTTCAGGACGGTAATCATTTGGCGACCCACCAGACCACGTGCGCTAAGAAAATTATGCAGAACAACATCGAGCAGGGCGTACCTAACAATAAATGGGGCAAGCACGCCTGCTCGGAATGCGGAAAGAAATTCACGACCAAGCAGAAAATGTTTCGCCACCAGTGGATCCATCGCAAGAAGACTCACTCGTGCGAGGTTTGCGGCTCGCAGTTCGAGAAGCAAAATGAGCTGGATGAGCACAGATTGTCGGCACATCCCGGAGATTCGCCGTTCACTTGCACAGACTGTGGGAAGAGCTTCGTGTCGCGTCAAGGCCTTTGGGAGCACGGTAGAACGCATGCTGGAAGTCCGGCTCATTTTCAATGCGATACATGCTCGAAGACATTCTCGTCGCGCCAGGGATATTTGATACACAATCGCACGCATACTGGCGAACGACCGTATGGCTGCAAGTTCTGTTGGAAGGCGTTTCGAGACGGCGGAACATTGAGGAAGCACGAGCGGATTCACACGGGGGAGAGGCCGCACGTATGTCCGTTGTGCTCGAGGGCTTTTAATCAGAAGGTAGTTTTGCGCGAACATGTTCGGTGGGTTCACGCAGCGGGAAAAAACGAGACGGAAGCGAGCAGTCCTCCGTACCAGTGTCCGCTTTGCGGTGCTATGAATCAGGATCGCGACGAGCTCTGCGCGCACATCGTCAAGCATTCGGATCAAATGATAGCTGAGGCAAAGGCAAAAACTAACAACGACACCTCACCGAAGTCGAAGCCAGCGAAGAAGAAATCGTCAAAGTGCGGCACGAACGCACAGACAAAGCAGAATGCTTTGGATTTTATTCCGAAGACGGAGCAAAACGAAGCTTTATTGTCCATCACAGAAACATCCGATAAATCAAACGAGATGCACGTTCTAGACGAGAAGCAAAACAACACGTTTGTTGTAGTTACGGAAAAGCGTAGCAATAGTTTCATAGCGTTATCCGAACTCAAGCACAGCAACATACGGTTTATCGTGGATGGCAAGGAAGATGAGAATATTCAGGTACTTCAAGTGGAGCAAGATCAGAGGGATTCTCTCGATATGATTGCTATAGATAAACAAAACGACGCGGTGAACATCGTATCCGCAGAATCCGTGGATGATGCGCTCGATGAAACAGTCAGGCAAAATGACATGACCACGATGCACTTGATCCAGTCTCCTAAGCAGAACAACACTCTAAATATAATCTCGAAACAGAACGAATCGCTGCCCGTTCTAGCGATACCAAATCCGCAGGGACACGAGAATTACTCCAGTCAGATTGTACAGATAAGTGCTGCGGACATACCTATGAACATCGTGAGTCAACAAACCttgaaagaggaaaagaatcATATTCAAGATGAGCAAGAATCTCTAATGTCAGATGAAACATCACGTGTTATTGTAACATATCAGCAAGACAGCGATGATGGAGAAGACTATGTCTGCGGTATCTGCGAGGAAAAATTTGATGGCAAAACTACATTGAAAGAACACATCAAgatacacatataa
- Protein Sequence
- MEAHEGEQYVTFPLTEVHDVIEENMISHEEICEPVDECVLQEGLTEVTVGNTASGDIVESQGTVEILAEQEEEEEDDTQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFENKKISCPVCKHLFTQEEMVEHQSVCQASPKLSCTTCGEKFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQAHMLQAHMHHVERPHKCTICGSDFQRPSSLSNHMKIHTYVAGRALMQSQSNNTSQSVETFRKWPENASDSQNASQIPSSSSVQSIQNYDVCQVQWPVSSYNFQSEQSIVTTMSNHQDTKMDTLQEFTVMPNGEVTQFTEYTEQNNINDSVNNSQQYDITINSFNTPDGIVKVETLFRYNNANKRDYGEAEVNNSKQYTCKHCGINFSRATALASHEKIHASKNWNMPIECEYCDKQFQDGNHLATHQTTCAKKIMQNNIEQGVPNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCTDCGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASSPPYQCPLCGAMNQDRDELCAHIVKHSDQMIAEAKAKTNNDTSPKSKPAKKKSSKCGTNAQTKQNALDFIPKTEQNEALLSITETSDKSNEMHVLDEKQNNTFVVVTEKRSNSFIALSELKHSNIRFIVDGKEDENIQVLQVEQDQRDSLDMIAIDKQNDAVNIVSAESVDDALDETVRQNDMTTMHLIQSPKQNNTLNIISKQNESLPVLAIPNPQGHENYSSQIVQISAADIPMNIVSQQTLKEEKNHIQDEQESLMSDETSRVIVTYQQDSDDGEDYVCGICEEKFDGKTTLKEHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476432;
- 90% Identity
- iTF_00127657;
- 80% Identity
- -