Cfel034196.1
Basic Information
- Insect
- Camponotus fellah
- Gene Symbol
- -
- Assembly
- GCA_030586385.1
- Location
- JAPIVC010000683.1:3875339-3878167[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.4 2.9e+02 3.7 0.4 3 20 126 142 124 144 0.83 2 14 0.00051 0.11 14.5 1.4 2 20 151 169 150 172 0.94 3 14 0.00024 0.049 15.5 1.5 1 23 178 201 178 201 0.94 4 14 1.4e-05 0.0029 19.4 1.5 1 23 207 229 207 229 0.98 5 14 9.3e-06 0.0019 19.9 0.7 1 23 382 404 382 404 0.98 6 14 0.0038 0.79 11.7 0.3 2 21 414 433 413 434 0.93 7 14 0.00034 0.072 15.0 2.6 1 20 456 475 456 478 0.92 8 14 0.021 4.3 9.4 0.5 1 23 483 506 483 506 0.95 9 14 4.7e-06 0.00098 20.9 0.1 1 23 512 534 512 534 0.98 10 14 0.00017 0.034 16.0 2.2 1 23 541 563 541 563 0.99 11 14 0.00041 0.084 14.8 0.4 3 23 571 591 569 591 0.97 12 14 0.00046 0.097 14.6 0.2 1 23 597 620 597 620 0.96 13 14 0.57 1.2e+02 4.9 0.1 1 23 634 656 634 656 0.93 14 14 4.1e-06 0.00086 21.1 0.2 1 23 919 941 919 941 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTCACGAGAACGAACAGTATGTGACGTTTCCTCTCGACGGTGTGCATGATGCTATACAAGAGAATATGATATCTCACGAGGAAATATGCGAACCAGGCGAATGCGTCGACGAATGCGTTCTCCAGGAGGATCTTACAGAAGTTTCAGTCAGTAACGCTAACAATATCGATATTGCTGAGTCACAAGATGCCGTTGAAATTCTCACTGAGCAGTCGGATGAGGAAGATGACAATCAGGTAGTGTATCCGATGTATATCAAGCAAGAGGAGCAGCAGCAGTACACGTCAGGTGACGACGAGTCCATGGCTGTGGAAGCTTTGCGGCAACTAGGCGGTATGTATCCATGTTACGAAAACAAGAAAATCAACTGTCCAATCTGTAAGTGTCTCTTTACTCAAGAAGAGATGGTTAAACATCGGTCTGTATGTACAGCATCTAAGCTATCCTGCACTACTTGCGGAGAGAGATTTGAAAGAAAGATTGATCTGAATAATCATATGGTATGTCATCAGGTGGATCGTCCTCATGCCTGTAGAACATGTGGAAATTTGTTTCGTTCCAAGAGCAGTTTGCAAGCACACATGCAGCAGGTGCATCAGGTCGAACGTCCACACAAATGCACCATCTGTGGTTCAGACTTTCAGAGGCCCTCCAGTTTATCTAACCACATgaagatacatacatatgtcgCAGGACGAGCGATCATGCAGTCACAAGGGAACAACATAGCTCAATCAGTGGAAACGTTTAGGAAATGGGAGAATGCATCTGATTCGCAAAATACATCTCAGATGCCATCTTCTTCGTCTGTTCAATctatacaaaattatgatGTATGTCAAGTTCAGTGGCCatcgtacaattttcataatgAACAATCGACAGTTACTACAATATCGAATCATCAGGAGAAGATGGATACGCTGCAGGAATTCACAGTAATGCCTAATGGTGAAGTGACACAATTCAGTGAGTACGCTGAGCAAAATAACATTAGTAATCCAATCAACAGCAGTCAACAATacgatatatcgataaattcatTCAATACTCCCGATGGAATAGTCAAAGTCGAGACGCTTTCGTATAACGCCAACAGAAAAAGTTATGGAAAAGTCGAAGCAAACAGTAAACAGTACACGTGCAAGCATTGTGGAATCAATTTTTCACGCGCGACTGCTCTGGCGTCTCATGAGAAGATTCACACTTCTAAAAATTGGAACATGCCGATCGAGTGCGAGTACTGTGACAAGCAGTTTCAAGACGGAAATCATTTGGCGACTCATCAGACCACTTGCGCTAAGAAGATAATGCAGAACAACATAGAACAAGGCGTGCCCAACAGCAAGTGGGGCAAGCACGCTTGTTCCGAATGCGGAAAGAAGTTCACGACCAAGCAGAAGATGTTTCGTCATCAGTGGATCCATCGAAAGAAGACACACTCGTGCGAAGTATGTGGTTCGCAATTTGAGAAGCAAAACGAGCTGGATGAGCACAGACTGTCGGCGCATCCTGGGGATTCGCCGTTCACTTGCGCTGAATGCGGGAAGAGCTTCGTCTCGCGACAAGGACTCTGGGAACACGGTAGAACGCACGCCGGGAGTCCAGCGCATTTTCAGTGCGATACCTGCTCGAAAACCTTTTCGTCTCGTCAAGGATATTTAATACACAATCGTACGCATACCGGTGAACGACCGTATGGCTGCAAGTTTTGCTGGAAAGCCTTCCGAGACGGCGGAACCTTGAGGAAACACGAACGGATCCACACCGGAGAGAGACCGCACGTGTGTCCGCTATGCTCGAGGGCTTTTAATCAGAAAGTAGTGTTACGCGAACACGTCCGATGGGTCCATGCCGCGGGAAAGAATGAAACGGAAGCGAGTAGTCCACCGTATCCATGTCCTCTGTGCGGTGCTTTGAATCAAGATCGCGATGAACTCTGCGCGCACATCGTTAAGCATTCGGATCAGATGATAGCTGAAGCAAAGGCAAAGACTAACAACGACGCTTCTCCAAAATCGAAGTCCTCAACGAAGAAGAAATCGTCGAAATCAGCGTCATCGTGTAACTCGCGGGCAAAGCAAAATGCTGCCTTGGAGCATTTCATCTCCAAGACGGAGCAAAATGAAGCCTTATTATCTATCACCGATACGTCTGATAAATCGGACGACTTGCACGTTATAAATGAGAAGCAGAACAACGCCTTCGTTGTGGTCACCGCGGAAAAACGTGGGGACGGTTTCATAGCGATATCCGAATTTAAGCACAGCAATATACGATTCATCGTGGAAGGCAAGGAAGACGAGAACATTCACGTACTTCAAGTAGATCAGAATCACCGGGATCCTCTCGATTTGATTGCTATGGATAAACAAAACGATGCGGCTCACATTGTATCGACAGAATCCGTAGATAATGCGCTCGATGAAACCATTAGACAAAACAATATATCTACGATGCACTTAATTCAGTCTTCTAAACAgaataatactttaaatataatatcaaagcaGAACGAATCATTACCTGTTCTAGCAATACCAAATCCTCAGAGTCATGAAAATTACTCCAGTCAAATCATACAAGTGAGCAATACAGATATACCTATGGATGTAATAACTCAGCAAAGCTTAAAGGAGGAAAAAGATCAAGATGAACATGATACTTTAATAGGAACATCTCAAGAAGGGACATCTCATGTTATTCAAGTTGTACAATATCAACATGATAGCGATGATGGAGACGATTTTACGTGTGAGATTTGTGAAGAAACTTTCGCTGACAAAAATATGTTGAAGGAGCACATTAAGGttcacatataa
- Protein Sequence
- METHENEQYVTFPLDGVHDAIQENMISHEEICEPGECVDECVLQEDLTEVSVSNANNIDIAESQDAVEILTEQSDEEDDNQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCYENKKINCPICKCLFTQEEMVKHRSVCTASKLSCTTCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQAHMQQVHQVERPHKCTICGSDFQRPSSLSNHMKIHTYVAGRAIMQSQGNNIAQSVETFRKWENASDSQNTSQMPSSSSVQSIQNYDVCQVQWPSYNFHNEQSTVTTISNHQEKMDTLQEFTVMPNGEVTQFSEYAEQNNISNPINSSQQYDISINSFNTPDGIVKVETLSYNANRKSYGKVEANSKQYTCKHCGINFSRATALASHEKIHTSKNWNMPIECEYCDKQFQDGNHLATHQTTCAKKIMQNNIEQGVPNSKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCAECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASSPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNDASPKSKSSTKKKSSKSASSCNSRAKQNAALEHFISKTEQNEALLSITDTSDKSDDLHVINEKQNNAFVVVTAEKRGDGFIAISEFKHSNIRFIVEGKEDENIHVLQVDQNHRDPLDLIAMDKQNDAAHIVSTESVDNALDETIRQNNISTMHLIQSSKQNNTLNIISKQNESLPVLAIPNPQSHENYSSQIIQVSNTDIPMDVITQQSLKEEKDQDEHDTLIGTSQEGTSHVIQVVQYQHDSDDGDDFTCEICEETFADKNMLKEHIKVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476432;
- 90% Identity
- iTF_00729521;
- 80% Identity
- -