Clev029206.1
Basic Information
- Insect
- Crematogaster levior
- Gene Symbol
- -
- Assembly
- GCA_901521435.1
- Location
- CABEGB010001214.1:314456-318597[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.2 1.7e+03 0.7 0.1 2 20 137 154 136 156 0.81 2 14 0.00038 0.072 14.4 1.4 2 20 164 182 163 185 0.94 3 14 0.00022 0.042 15.2 1.1 1 23 191 214 191 214 0.94 4 14 1e-05 0.002 19.4 1.5 1 23 222 244 222 244 0.98 5 14 7e-06 0.0013 19.9 0.7 1 23 407 429 407 429 0.98 6 14 0.0028 0.54 11.7 0.3 2 21 439 458 438 459 0.93 7 14 0.00026 0.048 15.0 2.6 1 20 481 500 481 503 0.92 8 14 0.015 2.9 9.4 0.5 1 23 508 531 508 531 0.95 9 14 3.5e-06 0.00066 20.9 0.1 1 23 537 559 537 559 0.98 10 14 0.00012 0.023 16.0 2.2 1 23 566 588 566 588 0.99 11 14 0.0003 0.057 14.8 0.4 3 23 596 616 594 616 0.97 12 14 0.00035 0.065 14.6 0.2 1 23 622 645 622 645 0.96 13 14 0.16 30 6.2 0.2 1 23 659 681 659 681 0.94 14 14 0.00016 0.03 15.6 0.1 1 23 937 959 937 959 0.98
Sequence Information
- Coding Sequence
- ATGAACCGGCAAAACACGAGCGTGCAACAACCAGTAGCGAGCGAAATGGAAACTCACGAGACAGAGCAATATGTGACGTTTCCCCTCACCGACGTGCAGGATGGCATAGAGGAGAACATGATATCTCACGAGGAGATATGCGAGCCTGTCGACGAGTGCGTTCTCCAGGAGGGTCTTACGGAGGTCACAGTTAGTAACACTGCCAGTGCTGACATCGTAGAGTCGCAAGGTACCGTCGAGATCCTTGCGGAACAGTCTGAAGAGGAAGACGACAATCAGGTAGTATATCCGATGTACATCAAGCAAGAGGAACAACAGCAGTATACGTCAGGTGACGACGAGTCCATGGCTGTGGAAGCTTTACGTCAACTAGGCGGTATGTATCCGTGCTTCGAGGACAAAAAGATTAGCTGTTCAGTCTGTAAGAATCTCTTCACCCAAGAAGAAATGATTGAACATCAGTCTGTATGTCAGTCATCGCCTAAACTATCCTGCACCACTTGCGGAGAGAGATTTGAGAGAAAGATTGATTTGAATAATCATATGGTTTGTCATCAAGTGGATCGTCCTCACGCGTGTAGAACATGCGGCAACTTGTTCCGTTCCAAAAGCAGTTTGCAAGCACATATGCTACAAGCGCATATGCATCACGTCGAACGACCGCACAAATGTACCATCTGTGGTTCGGACTTCCAAAGGCCTTCCAGTTTGTCCAATCATATGAAGATACACACATATGTAGCTGGTCGAGCTATTATGCAATCGCAGAGCAATGATATGGTTCAACCGGTGGAAACATTTAAGAAATGGCCGGAAAACACGTCTGATTCACAGAACACCTCTCAGATAGCATCTTCTTCATCTGTCCAGTCTATACAGAACTACGACGTATGTCAAGTTCAATGGCCGGTCTCGTCATACAATTTCCACAGTGAACAATCAATAGTTACTACAATATCAAATCAGGACAATGTCAGCCAGGATAAAATGGATACGCTGCAAGAGTTTACAGTAATGCCCAATGGTGAGGTGACGCAATTCAGCGAGTATACCGAGCAAAATAATATCAGTGATTCAGTTAATAACAGTCAACAGTATGATATAACGATAAATTCATTCAACACTCCTGATGGGATAGTTAAAGTTGAGACGCTTTACAGatacaataatgtaaataaaagagattACGAAGAAGCCGAAGTGAACAGCAGTAAGCAATACACGTGTAAGCATTGCGGAATCAATTTTTCACGCGCTACCGCGTTGGCGTCCCACGAGAAGATTCATATCTCCAAGAACTGGAACATGCCGATCGAGTGCGAATACTGCGACAAACAGTTTCAGGATGGCAATCATTTGGCGACCCACCAGACCACGTgcgctaaaaaaataatgcagaaCAACATCGAGCAAGGTATGCCCAACAATAAATGGGGCAAGCACGCCTGCTCGGAATGCGGAAAGAAATTCACGACCAAGCAGAAGATGTTTCGCCACCAGTGGATCCATCGCAAGAAGACTCATTCGTGTGAGGTTTGCGGCTCGCAGTTTGAGAAGCAAAACGAGTTGGATGAACACAGATTGTCGGCACATCCCGGCGATTCGCCGTTTACTTGTGCTGAATGTGGAAAGAGTTTTGTGTCCCGACAAGGTCTTTGGGAACACGGTAGAACACATGCCGGAAGTCCGGCCCATTTTCAATGTGATACCTGTTCGAAAACATTCTCGTCGCGGCAGGGTTATTTGATACATAATCGTACGCATACCGGTGAACGACCGTACGGCTGTAAATTTTGCTGGAAAGCGTTTCGAGACGGCGGAACTTTAAGGAAGCATGAGCGAATTCATACGGGGGAGAGACCGCACGTGTGTCCATTATGTTCGAGAGCTTTCAATCAGAAGGTAGTCCTACGCGAACATGTTCGATGGGTTCACGCAGCTGGGAAAAATGAAACTGAAGCGAGCAGTCCTCCGTATCAGTGTCCGCTTTGCGGTGCTCTGAATCAGGATCGCGACGAGCTCTGCGCGCACATTGTCAAGCATTCGGATCAGATGATAGCCGAAGCAAAGGCGAAAACTAACAACGACACCCCTCCAAAGTCGAAGCCAACGAAGAAAAAATCCAAGTGCGGCACGAACGCGCAGACGAAGCAGAACGCCTTGGACTTCATTCCGAAGACGGAGCAAAACGAAGCCTTGTTGTCCATCACAGATACGTCCGATAAGTCAAACGAAATGCACGTTTTAAATGAGAAGCAAAATAACGCGTTTGTTGTAGTTACCACAGAAAAACGTAGTGATGGTTTTATAGCGATATCCGAACTCAAGCACAACAACATACGGTTCATCGTGGATGGCAAAGAGGATGAGAACATTCAGGTACTTCAGGTGGAACAAGATTCTCAAAGAGATTCTCTCAATATAATTGCTATAGATAAACAAAACGATGTGGCAAACATCGTGTCCGCAGAATCCGTGGATGATGCACTCGATGAAACAGTCAGGCAAAATAACATGTCCACGATGCACTTGATTCAGTCTCCTAAGCAGAACAATactctaaatataatttcgaaaCAGAACGAAGCGCTACCCGTTCTAGCAATACCAAATCCACAGGGCCACGAGAGTTACTCCAGTCAAATCGTACAGATAAGTGGTGCAAACATATCTATGAACGTTGTAAATCAACAAACTCTGAAAGAGGAAGATATTTATATCCAAGATGAGCAAGATTCTTTATTGCCAGATGAAACATCGCATGTTATTGTACAGTATCAACAGCAGGACAGTGATGATGGAGAAGATTTTGTCTGCGGTATCTGCGAGGAAAAATTTGATGGCAAAACTATGTTGAAGGAACACATCAagatacacatataa
- Protein Sequence
- MNRQNTSVQQPVASEMETHETEQYVTFPLTDVQDGIEENMISHEEICEPVDECVLQEGLTEVTVSNTASADIVESQGTVEILAEQSEEEDDNQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKISCSVCKNLFTQEEMIEHQSVCQSSPKLSCTTCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQAHMLQAHMHHVERPHKCTICGSDFQRPSSLSNHMKIHTYVAGRAIMQSQSNDMVQPVETFKKWPENTSDSQNTSQIASSSSVQSIQNYDVCQVQWPVSSYNFHSEQSIVTTISNQDNVSQDKMDTLQEFTVMPNGEVTQFSEYTEQNNISDSVNNSQQYDITINSFNTPDGIVKVETLYRYNNVNKRDYEEAEVNSSKQYTCKHCGINFSRATALASHEKIHISKNWNMPIECEYCDKQFQDGNHLATHQTTCAKKIMQNNIEQGMPNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCAECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASSPPYQCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNDTPPKSKPTKKKSKCGTNAQTKQNALDFIPKTEQNEALLSITDTSDKSNEMHVLNEKQNNAFVVVTTEKRSDGFIAISELKHNNIRFIVDGKEDENIQVLQVEQDSQRDSLNIIAIDKQNDVANIVSAESVDDALDETVRQNNMSTMHLIQSPKQNNTLNIISKQNEALPVLAIPNPQGHESYSSQIVQISGANISMNVVNQQTLKEEDIYIQDEQDSLLPDETSHVIVQYQQQDSDDGEDFVCGICEEKFDGKTMLKEHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476432;
- 90% Identity
- iTF_00127657;
- 80% Identity
- -