Mpha010294.1
Basic Information
- Insect
- Monomorium pharaonis
- Gene Symbol
- -
- Assembly
- GCA_013373865.1
- Location
- CM023796.1:8769192-8772020[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00041 0.066 14.5 1.4 2 20 149 167 148 170 0.94 2 13 0.00039 0.063 14.5 1.2 1 23 176 199 176 199 0.94 3 13 8.2e-06 0.0013 19.8 1.4 1 23 207 229 207 229 0.98 4 13 1.7e-05 0.0027 18.8 0.4 1 23 388 410 388 410 0.98 5 13 0.00012 0.019 16.2 0.2 2 21 420 439 419 440 0.93 6 13 0.00065 0.11 13.8 3.0 1 20 462 481 462 484 0.92 7 13 0.016 2.6 9.4 0.5 1 23 489 512 489 512 0.95 8 13 1.1e-06 0.00018 22.5 0.3 1 23 518 540 518 540 0.98 9 13 0.00013 0.021 16.0 2.2 1 23 547 569 547 569 0.99 10 13 6.8e-05 0.011 16.9 0.4 3 23 577 597 575 597 0.97 11 13 0.00037 0.059 14.6 0.2 1 23 603 626 603 626 0.96 12 13 0.17 27 6.2 0.2 1 23 640 662 640 662 0.94 13 13 0.0003 0.049 14.9 0.1 1 23 919 941 919 941 0.97
Sequence Information
- Coding Sequence
- ATGGAGACCCACGAAGGAGAGCAGTACGTGACGTTTCCTCTCACCGAGGTACACGATGCCATAGAGGAGAGTATCATATCTCACGAGGAGATATGCGAGCCTGTCGACGAGTGCGTTCTCCAGGAAGGCCTTACGGAGGTCACCGTCGGTaatactgccagtactgataTCGTGGAGTCGCAAGGTACCGTCGAGATACTCACGGAACAGTCGGAAGAGGAAGACGATGGTCAGGTTGTATATCCAATGTACATCAAGCAAGAGGAACAGCAGCAGTACACGTCGGGGGACGACGAATCCATGGCTGTGGAGGCACTGCGTCAACTGGGCGGCATGTACCCGTGCTTCGAAGACAAGAAGATCAATTGCTCGGTCTGCAAGAATCTCTTTACCCAAGAGGAAATGGTTGAACATCAGTCCGTGTGCCAATCGTCTTCTAAGTTGTCCTGCACCACTTGCGGGGAGAGATTTGAGAGGAAGATTGATTTGAACAACCACATGGTTTGCCATCAGGTGGACCGTCCTCATGCTTGTAGAACCTGTGGTAACTTATTCCGTTCCAAAAACAATCTGCAGGCACATATGTTGCAGGCGCACATGCATCACGTCGAACGGCCGCACAAATGCAATATCTGTGGCTCGGATTTCCAGAGGCCTTCCAGCTTATCGAATCACATGAAAATACACACGTACGTCGCAGGACGGGCCATCATGCAGTCACAGAGTAACAACGTGTCTCAATCGACAGAGACATTCAGGAAGTGGCCGGAAAATGCAGCTGATTCGCAGAACGCTTCTCCAATATCATCTTCGTCTGTCCAGTCCATACAGAATTACGAGGTGTGTCAGGTTCAATGGCCGGTTTCGTCGTATAATTTCCAGAGCGAGCAATCGATAGTCACCACCATAGCGAATCACCAGGACGCCAAAATGGATACGCTGCAAGAGTTTACGGTGATGCCCAATGGCGAGGTGACGCAATTTACCGAGTACACcgaacaaaataatatcagtGACTCAGTCAATAACACTCAACAGTacgatataacaataaattcatTCAACACACCTGATGGGATAGTCAAAGTCGAGACGCTTTACAAACAAAACAATGCTAATAAACGAGATTACGGAGAGGCTGAAGTAAACAACAGCAAGCAGTACACATGTAAACATTGCGGAATTAATTTTGCGCGCGCAACCGCGCTGGCGTCTCACGAGAAAATTCACGCGTTTAAAAACTGGAATATGCCGATCGAGTGCGAGTACTGTGACAAGCAGTTTCAGGACGCCGATCATTTGGCGACTCATCAGACCACGTGCGCCAAGAAAATAATGCAGAACAACATCGAGCAGGGTGTGCCCAACAACAAATGGGGCAAACACGCTTGCTCACAATGCGGAAAGAAATTCACGACCAAACAGAAGATGTTTCGGCACCAATGGATCCATCGCAAGAAGACTCATTCGTGCGAGGTGTGCGGCTCACAGTTCGAAAAGCAGAACGAGCTGGACGAGCATAGATTGTCGGCGCATCCTGGCGATTCGCCGTTTACCTGCACGGAATGCGGGAAGAGCTTCGTATCGCGGCAGGGTCTTTGGGAGCACGGTAGAACGCACGCCGGAAGCCCGGCTCATTTTCAGTGCGATACTTGCTCGAAAACGTTCTCGTCTCGTCAGGgatatttgatacataatCGTACGCATACCGGTGAACGACCGTACGGGTGCAAATATTGCTGGAAGGCGTTTCGCGACGGCGGAACTTTGAGGAAGCACGAGCGGATCCACACAGGCGAAAGACCGCACGTGTGTCCGTTGTGCTCGAGGGCTTTTAATCAGAAGGTAGTTCTGCGTGAACATGTGCGATGGGTACACGCGGCGGGGAAGAACGAAACGGAAGCCAGCAGTCCTCCGTATCAGTGTCCACTCTGCGGCGCTCTGAATCAGGATCGCGACGAACTCTGCGCGCATATTGTTAAACATTCGGATCAAATGATAGCTGAAGCGAAGGCGAAAACTAGCAACGACATTTCTCCAAAATCGAAGTCAACGAAGAAAAAATCGAAGTCGTCGAACAGCGCAAACGCACAGACGAAGCAAAACGACTTGGACTTTATTCCGAAGGCAGAGCAAAACCAAGCCTTATTATCCATCACAGACACATCCGATAAAACAGATGATATGCACGTTATAAATGAGAAACAGAATAACGCATTTGTTGTAGTTACCACGGAAAAACGTAGCGATGGCTTCATAGCGATATCTGAGCTCAAACACAGCAACATACGGTTTATAGTGGACggtaaagaagaagagaacATCCAGGTACTTCAAGTGGAACAAAGGGATCCTCTTGATTTGATGGatatagagaaagaaagcgaCGCTGTGAACATTGTGTCCGCAGAATCCGTGGACGATTCACTCGAGGAAACGGTCACGCAAAACGACGTGTCTACGATGCATTTAATTCAATCTTCTAAGCAGAATAATactcttaatataatatcaaagcAGAACGAATCGCTGCCCGTTTTAACGATACCAAATCCGCAGGGCCATGAGAATTACTCGAGTCAGATTGTACAGATAAGTGGCGCGGAAATGTCTGTCAATGTTGTGAATCAACATACCCTGAAAGATGATAACAATCATATTCAAGATGAACAAGAACCTTTAATACCGGATGAAACATCGCatgttattatacaatatcagCACGACAGTGAAGGGGAAGATGAAGGAGAAGACTTTATCTGCGGTATCTGCGAGGAAAAATTTGATGGCAAAACTATGTTGAAGGAACATATTAagatacacatataa
- Protein Sequence
- METHEGEQYVTFPLTEVHDAIEESIISHEEICEPVDECVLQEGLTEVTVGNTASTDIVESQGTVEILTEQSEEEDDGQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKINCSVCKNLFTQEEMVEHQSVCQSSSKLSCTTCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKNNLQAHMLQAHMHHVERPHKCNICGSDFQRPSSLSNHMKIHTYVAGRAIMQSQSNNVSQSTETFRKWPENAADSQNASPISSSSVQSIQNYEVCQVQWPVSSYNFQSEQSIVTTIANHQDAKMDTLQEFTVMPNGEVTQFTEYTEQNNISDSVNNTQQYDITINSFNTPDGIVKVETLYKQNNANKRDYGEAEVNNSKQYTCKHCGINFARATALASHEKIHAFKNWNMPIECEYCDKQFQDADHLATHQTTCAKKIMQNNIEQGVPNNKWGKHACSQCGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKYCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASSPPYQCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTSNDISPKSKSTKKKSKSSNSANAQTKQNDLDFIPKAEQNQALLSITDTSDKTDDMHVINEKQNNAFVVVTTEKRSDGFIAISELKHSNIRFIVDGKEEENIQVLQVEQRDPLDLMDIEKESDAVNIVSAESVDDSLEETVTQNDVSTMHLIQSSKQNNTLNIISKQNESLPVLTIPNPQGHENYSSQIVQISGAEMSVNVVNQHTLKDDNNHIQDEQEPLIPDETSHVIIQYQHDSEGEDEGEDFICGICEEKFDGKTMLKEHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476432;
- 90% Identity
- -
- 80% Identity
- -