Tame009326.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Temnothorax americanus
Gene Symbol
-
Assembly
GCA_030770215.1
Location
JASTWO010000095.1:526705-529539[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.3 46 5.9 0.0 2 20 122 139 121 141 0.78
2 14 0.00056 0.086 14.5 1.4 2 20 149 167 148 170 0.94
3 14 0.00032 0.049 15.2 1.1 1 23 176 199 176 199 0.94
4 14 1.5e-05 0.0023 19.4 1.5 1 23 207 229 207 229 0.98
5 14 1.7e-05 0.0025 19.3 0.7 1 23 390 412 390 412 0.98
6 14 0.0025 0.39 12.4 0.2 2 22 422 442 421 442 0.93
7 14 0.00037 0.057 15.0 2.6 1 20 464 483 464 486 0.92
8 14 0.022 3.4 9.4 0.5 1 23 491 514 491 514 0.95
9 14 1.2e-06 0.00019 22.8 0.6 1 23 520 542 520 542 0.99
10 14 0.00018 0.028 16.0 2.2 1 23 549 571 549 571 0.99
11 14 0.00044 0.067 14.8 0.4 3 23 579 599 577 599 0.97
12 14 0.0005 0.077 14.6 0.2 1 23 605 628 605 628 0.96
13 14 0.23 36 6.2 0.2 1 23 642 664 642 664 0.94
14 14 0.00017 0.027 16.1 0.2 1 23 921 943 921 943 0.98

Sequence Information

Coding Sequence
ATGGAGACCCACGAGGGGGAGCAGTACGTGACATTTCCCCTCGCCGAGGTGCACGGTGTCATAGAGGAGAACATGATATCTCACGAGGAGGTATGCGAGCCTGTCAACGAATGCGTTCTCCAGGAAGGCCTTACGGAGGTCACGGTCGGTAACACTGTCAGTGTTGACATCGTGGAGTCGCAGGGTACCGTCGAGATCCTTGCGGAACGGTCGGAAGAGGAAGATGACGATCAAGTGGTATATCCGATGTATATCAAGCAAGAGGAACAGCAGCAGTATACGTCGGGTGACGACGAGTCCATGGCTGTGGAAGCTCTGCGTCAGCTGGGCGGTATGTATCCATGCTTCGAGGATAAGAAGATCAGTTGTCCGATCTGCAAGCGTCTCTTCACCCAAGAGGATATGGTTGAACATCAGTCTGTGTGTCAGTCGTCGCCTAAATTATCCTGCACCACTTGCGGGGAGAGATTTGAGAGAAAGATTGACTTGAATAACCATATGGTTTGTCATCAAGTGGATCGTCCTCATGCGTGTAGAACGTGCGGCAACTTGTTTCGTTCCAAGAGCAGTTTGCAGGCACACATGCTACAGGCGCACATGCGTCACGTCGAACGGCCGCACAAGTGTACCATCTGTGGCTCCGACTTCCAGAGGCCTTCCAGCTTGTCCAACCACATGAAGATACACACATACGTCGCGGGACGAGCCATCGTGCAATCACAGGGTAATAATATGTCTCAATCGGTGGAGACATTTAGAAAGTGGCCAGAAAACGCGTCTGATTCGCAGAACGCTTCTCAGATACCATCTTCTTCGTCTGTCCAATCTATACAGAACTACGACGTGTGTCAAGTTCAATGGCCGGTCTCGTCGTACAATTTCAGCAGCGAACAATCGATAGTTACCGCAATGTCGAATCACCAGGATGCCAAGATGGATACGCTGCAAGAGTTTACGGTAATGCCCAATGGTGAAGTGGCGCAGTTTAGCGAGTACACCGAGCAAAATGATATCAGCGATTCGGTCAATAACAGTCAACAGTATGACATAACGATAAATTCATTCAACACTCCCGACGGGATAGTCAAAGTCGAGACGCTTTATAGATATAACAGTACGAATAAAAGAGATTACGCCGGAGAAGCTGAAGTAAACAACAGTAAGCGGTACACGTGTAAGCATTGCGGAGTCAATTTTTCACGCGCGACCGCGTTGGCGTCTCACGAGAAGATTCATGCCTCCAAGACCTGGAATATGCCGATCGAGTGCGAGTACTGCGACAAGCAGTTTCAGGACGGCAATCATTTGGCGAACCACCAGATCACGTGCGCCAAGAAAATAATGCGGAACAACATCGAGCAAGGTATGCCTAACAATAAATGGGGCAAGCACGCTTGCTCGGAATGCGGGAAGAAATTTACCACGAAGCAGAAGATGTTTCGCCACCAGTGGATCCATCGCAAGAAAACTCACTCGTGCGAGGTTTGCGGCTCGCAGTTTGAGAAGCAGAACGAGCTGGATGAGCACAGATTGTCGGCGCACCCCGGAGACTCGCCGTTTACCTGCACGGACTGCGGAAAGAGCTTCGTTTCGCGACAAGGTCTTTGGGAGCACAGCAGAACGCATGCCGGTAGTCCGGCCCATTTTCAGTGCGACACCTGCTCGAAAACGTTTTCGTCGCGCCAGGGATACTTAATACACAATCGTACGCATACCGGTGAACGTCCGTACGGCTGCAAGTTCTGCTGGAAAGCTTTTCGAGACGGCGGAACTTTGAGGAAGCACGAGCGGATTCACACGGGGGAGAGACCGCACGTGTGCCCGTTGTGCTCAAGGGCTTTTAATCAGAAGGTGGTCCTGCGCGAGCATGTTCGATGGGTCCACGCGGCGGGGAAAAACGAGACGGAAGCGAGCAGTCCTCCGTATCAGTGTCCGCTTTGCGGTGCTCTCAATCAGGATCGCGACGAGCTCTGCGCGCACATAGTCAAGCATTCGGATCAGATGATAGCCGAGGCAAAAGCGAAAACCAACACCGACGCCTCGCCGAAGTCGAAGCCAACGAAGAAGAAATCGTCGAAATCGGGCGGCACGAACGCGCAGACGAAGCAGAACGCTTTGGACTTTATTCCGAAGACGGAGCAAAACGAAGCCTTGTTGTCCATCACAGATCCATCCGACAGATCGGACGAGATGCGTGTTCTAAATGAGAAGCAAAACAACGCGTTTGTCGTGGTCACTACGGAGAAACGTAGCGACGGTTTCATAGCGATATCTGAGCTCAAGCACAGCAACATACGGTTTATCGTGGATGGCAAGGAAGACGAGAATATTCAGGTGCTTCGAGTGGAACAAGATCACAGGGATTCTCTCGATATAATTGCCATAGACAAACAAAACGACGCGGCGAACATCGTGTCCACGGAATCCGTGGACGACGCGCTCGATGAAACGGTCAGGCAGGATGACGTGTCCACGATGCGCTTGATTCAGTCTCCCAAGCAGGACAACACTCTAAATATCATCTCGAAACAGAACGAATCGCTGCCCGTTCTAACGATACCAAATCCGCAGGGTCACGAGAATTACTCCAGTCAGATCGTACAGATAAGCGGTGCGGATATATCTATGAACGTTGTGACTGAACTAGACCCGAAGGAAGAAAAGAATCATATCCAAGACGAGCAGGATTCTTTAATGTCGGACGAAACGTCGCATGTTATTGTACAGTATCAGCAGCACGACAGCGACGATGGAGATGATTTCGTCTGCGGTATCTGCGAGGAGAAATTTGATGGCAAAACTACATTGAAGGAACACATCAAGatacacatataa
Protein Sequence
METHEGEQYVTFPLAEVHGVIEENMISHEEVCEPVNECVLQEGLTEVTVGNTVSVDIVESQGTVEILAERSEEEDDDQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKISCPICKRLFTQEDMVEHQSVCQSSPKLSCTTCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQAHMLQAHMRHVERPHKCTICGSDFQRPSSLSNHMKIHTYVAGRAIVQSQGNNMSQSVETFRKWPENASDSQNASQIPSSSSVQSIQNYDVCQVQWPVSSYNFSSEQSIVTAMSNHQDAKMDTLQEFTVMPNGEVAQFSEYTEQNDISDSVNNSQQYDITINSFNTPDGIVKVETLYRYNSTNKRDYAGEAEVNNSKRYTCKHCGVNFSRATALASHEKIHASKTWNMPIECEYCDKQFQDGNHLANHQITCAKKIMRNNIEQGMPNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCTDCGKSFVSRQGLWEHSRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASSPPYQCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNTDASPKSKPTKKKSSKSGGTNAQTKQNALDFIPKTEQNEALLSITDPSDRSDEMRVLNEKQNNAFVVVTTEKRSDGFIAISELKHSNIRFIVDGKEDENIQVLRVEQDHRDSLDIIAIDKQNDAANIVSTESVDDALDETVRQDDVSTMRLIQSPKQDNTLNIISKQNESLPVLTIPNPQGHENYSSQIVQISGADISMNVVTELDPKEEKNHIQDEQDSLMSDETSHVIVQYQQHDSDDGDDFVCGICEEKFDGKTTLKEHIKIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01476432;
90% Identity
iTF_00127657;
80% Identity
-