Sinv003913.1
Basic Information
- Insect
- Solenopsis invicta
- Gene Symbol
- -
- Assembly
- GCA_016802725.1
- Location
- NC:5188701-5192758[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00033 0.029 14.5 1.4 2 20 148 166 147 169 0.94 2 13 0.00037 0.033 14.3 1.7 1 23 175 198 175 198 0.94 3 13 6.6e-06 0.00059 19.8 1.4 1 23 206 228 206 228 0.98 4 13 2.6e-06 0.00023 21.1 0.7 1 23 386 408 386 408 0.98 5 13 0.0024 0.21 11.8 0.3 2 21 418 437 417 438 0.93 6 13 0.00022 0.019 15.0 2.6 1 20 460 479 460 482 0.92 7 13 0.013 1.2 9.5 0.5 1 23 487 510 487 510 0.95 8 13 9.2e-07 8.1e-05 22.5 0.3 1 23 516 538 516 538 0.98 9 13 0.00011 0.0093 16.0 2.2 1 23 545 567 545 567 0.99 10 13 0.00026 0.023 14.8 0.4 3 23 575 595 573 595 0.97 11 13 0.0003 0.026 14.6 0.2 1 23 601 624 601 624 0.96 12 13 0.014 1.2 9.4 0.2 1 23 638 660 638 660 0.97 13 13 0.00078 0.068 13.3 0.6 2 23 903 924 902 924 0.96
Sequence Information
- Coding Sequence
- ATGGATCACGAAGGAGAGCAGTATGTGACATTTCCCCTCACTGATGTGCAAGATGCTATAGAGGAGAGCATCATATCTCACGAGGAGATTTGCGAGCCTGTCGACGAGTGCGTTCTCCAGGAGGGTCTTACGGAGGTCACCGTCAGTAACACCGCCAGCACTGATATCGTAGAGTCACAAGGTACCGTTGAGATTCTCGCGGAACAGTCAGAAGAGGAGGACGATGGTCAGGTAGTGTATCCGATGTACATTAAGCAAGAAGAACAGCAGCAGTATACATCGGGTGACGATGAGTCCATGGCTGTGGAAGCGCTGCGTCAGCTGGGCGGCATGTACCCATGCTTCGAGGACAAGAAGGTCAGTTGCTCAGTCTGTAAAAATCTCTTTACTCAAGAGGAAATGGTTGAACATCAGTCTGTATGTCAGTCATCACCTAAGCTGTCCTGTACCACTTGCGGAGAGAGATTTGAGAGGAAGATTGATTTGAACAATCATATGGTTTGTCATCAAGTGGATCGTCCTCATGCATGCAGAACATGTGGCAACTTATTTCGTTCCAAGAGCAGTCTCCAGACGCATATGCTGCAGGCGCATATGCATCACGTCGAACGGCCGCACAAATGTAACATCTGCGGCTCGGATTTCCAGAGGCCTTCCAGCTTGTCGAATCACATGAAGATACACACGTACGTCGCGGGACGAGCCATTATGCAGTCGCAGAGTAATAATGCGTCTCAATCGGTGGAAACTTTCAGGAAATGGTCGGAAAACGCATCTGATTCGCCGAATTCTTCTCAGATACCATCTTCTTCGTCTGCCCAATCTATACAGAGCTACGACGTGTGTCAGGTTCAATGGCCGGTTTCGTCATACAATTTCCAGAATGAACAATCAATAGTTACTACTATGGCAAACAACCAGGACAAGATGGATACGCTGCAAGAGTTTACGGTGATGCCTAATGGCGAAGTGACGCAATTTAACGAGTATACCGAGCAAAATAATATCACTGATTCAGTTAATAATCAACAATatgatattacaataaattcatTCAATACTCCCGATGGAATAGTGAAAGTTGAAACGCTTTACCGATACAATAATGCGAATAAACGAGAATACGGAGAAGCCGAAGTGAACAGCAGCAAGCAGTATACGTGTAAGCATTGCGGTGTCAGTTTTTCACGCGCAACTGCGTTGGCGTCTCACGAGAAGATTCACGTTTCCAAAAACTGGAACATGCCAATCGAGTGCGAGTACTGCGACAAGCAATTTCAAGATGGTAATCATTTGGCGACTCATCAGACCACCTGCGCTAAGAAAATAATGCAGAGCAACATCGAGCAAGGTGTGCCCAACAACAAATGGGGCAAGCACGCCTGCTCGGAATGCGGAAAGAAATTCACGACCAAACAGAAGATGTTTCGGCATCAATGGATACATCGCAAAAAGACTCATTCGTGTGAGGTATGCGGCTCGCAGTTTGAGAAGCAGAATGAATTAGACGAACACAGATTGTCAGCGCATCCCGGAGATTCGCCGTTTACCTGTACAGAATGCGGAAAGAGCTTTGTGTCGCGGCAGGGCCTGTGGGAGCATGGCAGAACGCATGCAGGGAGTCCAGCTCATTTTCAATGCGACACCTGCTCAAAAACATTCTCATCTCGTCAAGGATACTTGATACATAATCGTACTCATACTGGCGAACGACCGTATGGCTGCAAGTTTTGTTGGAAGGCGTTCCGAGACGGCGGAACTTTGAGGAAGCACGAGCGGATCCACACTGGTGAGAGACCGCACGTGTGTCCGTTGTGCTCGAGGGCTTTTAATCAGAAGGTGGTCCTGCGCGAACATGTGCGATGGGTTCACGCGGCGGGAAAGAACGAGACGGAAGCGAGCAGTCCTCCGTATCAGTGTCCGCTTTGCGGCGCTATGAATCAAGATCGCGATGAGCTCTGCGCGCACATCGTCAAGCATTCGGATCAGATGATAGCTGAAGCAAAGGCGAAGACTAATAACGACACTCCTGTAAAATCCAAGTCAACAAAGAAAAAATCATCAAAGTCGTTGAGCAGCGCGAACGCACAAAAGACGGAGCAAAACGAAGCCTTACTATCCATCACAGATACATCTGATAAAACAGACGACATGCAAATAGACGAAAAGCAGAACAATGCGTATGTTGTAGTTACTACGGAAAAACGTAGCGATGGCTTCATCGCGATATCCGAGCTCAAGCATAGCAGCATACGGTTCATCGTGGATGGCAAAGAAGATGAGAACATTCAGGTACTTCAAGTGGAACAGGATCAAAGAGATTCTCTCAATATGATGAATATAGAGAAGCAAAGCGACACAGTGAGCATGGACGTGTCCGCGGAATCCATAAACGACACGCTCGAGGAAACGGTCAGGCAAGACGACATGTCCACGATACATTTGATTCAGTCTCCCAGGCAGGACAACACTCTCAACATAATATCGAAGCAGAATGAATCATTGCCCGTTTTGGCGATACCAAATCCGCAAGGCCATGAGAATTATTCCAGTCAGATTGTACAAATAAGTGACGCGAACATAACTGTGGATGAACATaacttgaaagaagaaaatcatATCGAAGACGAGCAAGATTCTTTAATACCGGATGAAACATCGCATGTTATTGTACAGTATCATCATGACAGCGATGATGGAAGTTGTATTTGTGGTATCTGTGAGGAAAAATTTGATGGCAAAACTACATTGAGAGAACACATCAAGATACAcatataa
- Protein Sequence
- MDHEGEQYVTFPLTDVQDAIEESIISHEEICEPVDECVLQEGLTEVTVSNTASTDIVESQGTVEILAEQSEEEDDGQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKVSCSVCKNLFTQEEMVEHQSVCQSSPKLSCTTCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQTHMLQAHMHHVERPHKCNICGSDFQRPSSLSNHMKIHTYVAGRAIMQSQSNNASQSVETFRKWSENASDSPNSSQIPSSSSAQSIQSYDVCQVQWPVSSYNFQNEQSIVTTMANNQDKMDTLQEFTVMPNGEVTQFNEYTEQNNITDSVNNQQYDITINSFNTPDGIVKVETLYRYNNANKREYGEAEVNSSKQYTCKHCGVSFSRATALASHEKIHVSKNWNMPIECEYCDKQFQDGNHLATHQTTCAKKIMQSNIEQGVPNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASSPPYQCPLCGAMNQDRDELCAHIVKHSDQMIAEAKAKTNNDTPVKSKSTKKKSSKSLSSANAQKTEQNEALLSITDTSDKTDDMQIDEKQNNAYVVVTTEKRSDGFIAISELKHSSIRFIVDGKEDENIQVLQVEQDQRDSLNMMNIEKQSDTVSMDVSAESINDTLEETVRQDDMSTIHLIQSPRQDNTLNIISKQNESLPVLAIPNPQGHENYSSQIVQISDANITVDEHNLKEENHIEDEQDSLIPDETSHVIVQYHHDSDDGSCICGICEEKFDGKTTLREHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476432;
- 90% Identity
- iTF_01354780;
- 80% Identity
- -