Hsub013985.1
Basic Information
- Insect
- Harpagoxenus sublaevis
- Gene Symbol
- -
- Assembly
- GCA_030770355.1
- Location
- JASTWR010000092.1:475713-478547[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2 3.7e+02 3.3 0.1 2 20 122 139 121 141 0.79 2 14 0.00056 0.1 14.5 1.4 2 20 149 167 148 170 0.94 3 14 0.00032 0.059 15.2 1.1 1 23 176 199 176 199 0.94 4 14 1.5e-05 0.0028 19.4 1.5 1 23 207 229 207 229 0.98 5 14 4e-05 0.0073 18.1 1.1 1 23 395 417 395 417 0.98 6 14 0.00016 0.028 16.2 0.3 2 22 427 447 426 447 0.93 7 14 0.00038 0.068 15.0 2.6 1 20 469 488 469 491 0.92 8 14 0.023 4.1 9.4 0.5 1 23 496 519 496 519 0.95 9 14 5.1e-06 0.00093 20.9 0.1 1 23 525 547 525 547 0.98 10 14 0.00018 0.033 16.0 2.2 1 23 554 576 554 576 0.99 11 14 0.00044 0.08 14.8 0.4 3 23 584 604 582 604 0.97 12 14 0.00051 0.092 14.6 0.2 1 23 610 633 610 633 0.96 13 14 0.55 99 5.1 0.3 1 23 647 669 647 669 0.94 14 14 0.00017 0.032 16.1 0.2 1 23 921 943 921 943 0.98
Sequence Information
- Coding Sequence
- ATGGAGGCCCACGAGGGGGAGCAGTATGTGACATTTCCCCTCGCCGAGGTGCACGATGCCATAGAGGAGAATATGATATCTCACGAGGAGATATGCGAGCCTGTCGATGAATGCGTTCTCCAGGAGGGCCTCACGGAGGTCACGGTCAGTAACACCGCCAGTGGTGATATCGTGGAGTCGCAAGGTACCGTCGAGATCCTTGCGGAACAGTCGGAAGAGGAAGACGACAATCAGGTGGTATACCCGATGTATATCAAGCAAGAGGAACAGCAGCAGTATACGTCAGGTGACGACGAGTCCATGGCTGTGGAAGCTCTGCGTCAACTAGGCGGTATGTACCCGTGCTTCGAGGACAAGAAGATCAGTTGTCCGGTCTGCAAGCATCTCTTCACCCAAGAGGAAATGGTTGAACATCAGTCCATGTGTCAGTCATCGCCTAAACTGTCCTGCACCACTTGTGGAGAGAGATTTGAGAGAAAGATTGACTTGAATAACCATATGGTTTGTCATCAAGTGGATCGTCCTCATGCCTGTAGAACGTGCGGCAATCTGTTTCGTTCCAAGAGCAGTTTGCAGGCACATATGCTACAAGCGCACATGCATCAAGTCGAACGACCGCACAAGTGTACCATCTGTGGCTCGGATTTCCAAAGACCTTCCAGCTTGTCCAACCACATGAAGATACACACATACGTCGCGGGACGAGCCCTCATGCAGGGACGAGCCATCATGCAATCACAGGGTAGTAATGTGTCTCAATCGGTGGAGACATTTAGGAAGTGGCCGGAAAACGCGTCTGATTCACAGGACGCTTCTCAGATACCATCATCTTCATCTGTCCAGTCTATACAGAACTACGACGTGTGTCAAGTTCAATGGCCGGTCTCGTCGTACAATTTCAGCAGCGAACAATCAATAGTTACCACAATGTCGAATCACCAGGACGCCAAGATGGATACGCTGCAAGAGTTTACGGTAATGCCCAATGGTGAGGTGGCGGAATTTAGCGAGTATACCGAGCAAAATAATATCAGTGATTCGGTCAACAATAGTCAACAGTATGATATAACGATAAATTCATTCAACACTCCCGACGGGATAGTAAAAGTTGAGACGCTTTACAGATATAATAGTGCGAATAAAAAAGATTACGGGGAAGCTGAAGTAAATAGCAGCAAGCAATACACGTGTAAGCATTGCGGAAACAATTTTTCACGCGCGACCGCGTTGGCGTCTCATGAGAAGATTCATGCCTCTAAAAACTGGAATATGCCGATCGAGTGCGAGTACTGCGACAAGCAGTTTCAGGACAGCAATCATTTGGCGAACCATCAGATTACGTGCGCCAAGAAAATAATGCAGAACAACATCGAGCAAGGTATGCCTAGCAATAAATGGGGCAAGCACGCTTGCTCGGAATGCGGGAAGAAATTCACGACCAAGCAGAAGATGTTTCGCCACCAGTGGATCCATCGCAAGAAGACTCACTCGTGCGAGGTTTGCGGCTCGCAGTTTGAGAAGCAGAACGAGCTGGATGAACACAGATTGTCGGCACACCCCGGAGATTCGCCGTTTACTTGCGCGGAATGCGGAAAGAGCTTCGTTTCCCGACAAGGTCTTTGGGAGCACGGCAGAACGCATGCCGGTAGTCCGGCCCATTTTCAGTGTGACACCTGCTCGAAAACATTCTCGTCGCGCCAGGGGTACTTAATACACAATCGTACACATACCGGTGAACGACCGTATGGCTGCAAATTCTGCTGGAAAGCGTTTCGAGACGGCGGAACTTTGAGGAAACACGAGCGGATTCACACGGGGGAGAGACCGCACGTGTGTCCGTTGTGCTCGAGGGCTTTTAATCAGAAGGTGGTCCTGCGCGAACATGTTCGATGGGTTCACGCGGCAGGGAAAAACGAGACGGAAGCGAGCGGCCCTCCGTATCAGTGTACGCTTTGTGGCGCTCTGAATCAGGATCGCGACGAGCTCTGCGCGCACATCGTCAAGCACTCGGATCAGATGATAGCCGAGGCAAAGGCGAAAACTAACAATGACACCTCTCCGAAGTCGAAGCCAACAAAGAAGAAATCGTCGAAGTCAGGTGGCACGAAGCAGACCGCCTTGGACTTTAATCCGAAGACGGAGCAAAACGAAGCCTTATTATCCATCACAGATCCATCCGACAAATCGGACGAAATGCAGGTTCTAGATGAGAAGCAAAACAACGCGTTTGTTGTAGTTACTACAGATAAACGTAACGACGGTTTCGTAGCGATATCCGAGCTCAAGCACAGCAACATACGGTTCATCGTGGATGGCAAGGAAGATGAGAACATTCAGGTGCTTCAAGTGGAACAAGATCAAAGGGATTCTCTCGATATAATTGCTATAGATAAGCAAAACGACGTGGCGAACATCGTGTCCGCAGAATCCGTGGACGACGCGCTCGATGAAACAGTCAGGCAAGATGACATGTCCACGATGCACTTGATTCAGTCCCCTAAGCAGAACAACACTCTAAATATCATCTCGAAACAGAACGAATCGCTGCCCGTTCTAGCGATACCAAATCCGCAAGGTCACGAGAATTACTCCAGTCAGATTGTACAGATAAGTGTTGCGGATATAGCTATGAACATTGTGAGTCAAACtctgaaagagaaaaagaatcaTATCCAAGACGAGCAGGATTCTTTAATGCCGGACGAAACATCGCATGTTATTGTACAGTATGATCAGGACGACAGCGACGATGGAGACGATTTTGTCTGCGGTATCTGCGAGGAGAAATTTGATGGCAAAACTACGTTGAAGGAACACATAAAGATACACATATAA
- Protein Sequence
- MEAHEGEQYVTFPLAEVHDAIEENMISHEEICEPVDECVLQEGLTEVTVSNTASGDIVESQGTVEILAEQSEEEDDNQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKISCPVCKHLFTQEEMVEHQSMCQSSPKLSCTTCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQAHMLQAHMHQVERPHKCTICGSDFQRPSSLSNHMKIHTYVAGRALMQGRAIMQSQGSNVSQSVETFRKWPENASDSQDASQIPSSSSVQSIQNYDVCQVQWPVSSYNFSSEQSIVTTMSNHQDAKMDTLQEFTVMPNGEVAEFSEYTEQNNISDSVNNSQQYDITINSFNTPDGIVKVETLYRYNSANKKDYGEAEVNSSKQYTCKHCGNNFSRATALASHEKIHASKNWNMPIECEYCDKQFQDSNHLANHQITCAKKIMQNNIEQGMPSNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCAECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASGPPYQCTLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNDTSPKSKPTKKKSSKSGGTKQTALDFNPKTEQNEALLSITDPSDKSDEMQVLDEKQNNAFVVVTTDKRNDGFVAISELKHSNIRFIVDGKEDENIQVLQVEQDQRDSLDIIAIDKQNDVANIVSAESVDDALDETVRQDDMSTMHLIQSPKQNNTLNIISKQNESLPVLAIPNPQGHENYSSQIVQISVADIAMNIVSQTLKEKKNHIQDEQDSLMPDETSHVIVQYDQDDSDDGDDFVCGICEEKFDGKTTLKEHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476432;
- 90% Identity
- iTF_00127657;
- 80% Identity
- -