Fexs009315.1
Basic Information
- Insect
- Formica exsecta
- Gene Symbol
- -
- Assembly
- GCA_003651465.1
- Location
- NW:3420161-3455236[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.7 1.1e+02 2.9 0.3 2 19 125 141 124 144 0.74 2 14 0.015 1 9.3 1.0 5 20 154 169 149 172 0.90 3 14 0.00022 0.015 15.1 1.2 1 23 178 201 178 201 0.93 4 14 2e-06 0.00013 21.5 1.2 1 23 207 229 207 229 0.98 5 14 6.4e-06 0.00043 19.9 0.7 1 23 387 409 387 409 0.98 6 14 0.0038 0.26 11.2 0.2 2 22 419 439 418 439 0.93 7 14 0.00023 0.016 15.0 2.6 1 20 461 480 461 483 0.92 8 14 0.014 0.95 9.4 0.5 1 23 488 511 488 511 0.95 9 14 9.8e-07 6.6e-05 22.5 0.3 1 23 517 539 517 539 0.98 10 14 0.00011 0.0076 16.0 2.2 1 23 546 568 546 568 0.99 11 14 0.00028 0.019 14.8 0.4 3 23 576 596 574 596 0.97 12 14 0.00032 0.021 14.6 0.2 1 23 602 625 602 625 0.96 13 14 0.39 26 4.9 0.1 1 23 639 661 639 661 0.93 14 14 2.8e-06 0.00019 21.1 0.2 1 23 924 946 924 946 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTCACGAGAGCGAACAGTACGTGACGTTTCCTCTCGACGGTGTACATGATGCCATACAAGAGAATATGATATCTCACGAGGAGATATGTGAACCTGTCGAATGCGTTGACGAATGTGTCCTCCAGGAGGACCTTACGGAAGTCTCAGTCAGCAACGCTAACAATACTGATATTGCTGAGTCGCAAGAGGCTGTTGAAATTCTTACGGAACGATCAGATGAAGAGGATGACAATCAGGTAGTGTATCCAATGTACATCAAGCAAGAGGAGCAGCAGCAGTACACGTCGGGTGACGACGAATCCCTGGCTGTGGAAGCTCTGCGTCAATTGGGCGGTATGTATCCATGCTTTGAAAACAAGAAAATCAGCTGTCCAATCTGTAAGTGTCTCTTTACCCAAGAAGAGATGGTTGAACATCGGTCTGTATGTACAGTGTCTAAACTATCCTGCATCACCTGTGGTGAGAGATTTGAGAGAAAGATTGACCTGAATAATCATATGGTATGTCATCAGGTGGATCGTCCTCACGCATGCAGAACATGCGGCAATTTGTTTCGTTCTAAAAGCAGTCTGCAAGCACACATGCTGCAGGTACATCAGGTCGAACGTCCACACAAATGCACTATCTGTGGCTTGGACTTTCAGAGGCCCTCCAGCTTATCTAACCACATGAAGATACATACGTACGTCGCGGGACGAGCGATCATGCAGTCACAAGGgaataatatatctcaatcAGTGGAAACGTTTAGGAAGTGGTCGGAGAATGCGTCCGATTCGCAGAATACATCTCAGATGCCATCTTCTTCATCTGTTCAATCTATACAGAATTATGATGTATGTCAAGTTCAATGGCCGGTCTCATCATACAATTTTCATAACGAACAATCGACAGTTACCACAATATCGAATCATCAGGAGAAGATGGATACGCTACAAGAATTTACGGTAATGCCTAATGGTGAAGTGACACAATTCAGCGAGTATACTgagcaaaataatatcagtAATCCAGTCAATAACAGTCAACACTatgatatatcgataaattcgTTTAATACTCCCGACGGAATAGTCAAAGTCGAAACGCTTTCATATAATAACGCGAATAGAAAAAGTTATGGAAAAGTCGAAACAAACAGCAGTAAACAGTACACGTGCAAGCATTGCGGGATCAATTTTTCACGTGCGACTGCATTGGCATCTCATGAGAAGATTCACACTTCTAAAAACTGGAACATGCCGATCGAGTGCGCGTATTGCGACAAACAGTTTCAAAACGGGAATCATTTAGCGAACCATCAGATCACTTGCGCCAAGAAGATAATGCAGAACAATATAGAACAAGGCGTGCCCAACAACAAGTGGGGCAAGCATGCTTGTTCCGAGTGCGGAAAGAAGTTCACGACCAAGCAGAAAATGTTTCGTCATCAGTGGATCCACCGAAAAAAAACACACTCGTGCGAAGTATGCGGTTCGCAGTTTGAGAAGCAAAACGAGCTGGACGAGCATAGATTGTCTGCACATCCCGGAGATTCGCCGTTCACTTGCACTGAATGCGGAAAGAGCTTCGTGTCGCGACAAGGTCTCTGGGAGCACGGTAGAACGCACGCTGGGAGCCCGGCGCATTTTCAATGCGACACTTGCTCGAAAACCTTTTCGTCTCGCCAAGGATATTTAATACACAATCGTACGCATACCGGCGAACGACCGTATGGCTGCAAGTTTTGTTGGAAAGCGTTTCGGGATGGCGGGACCTTGAGGAAGCATGAACGGATTCACACCGGGGAAAGACCACACGTGTGTCCGTTATGCTCGAGGGCTTTTAATCAGAAAGTAGTCCTGCGCGAACACGTTCGATGGGTCCACGCCGCGGGAAAAAACGAGACAGAAGCGAGCAATCCTCCGTATCCGTGTCCCCTGTGCGGTGCTCTCAATCAAGACCGCGATGAACTCTGCGCACATATCGTTAAGCATTCGGATCAGATGATAGCCGAGGCAAAGGCGAAGACTAACAACGATGCCTCTCCGAAGTCGAAGCCAATGAAGAAGAAATCATCGAAATCAACGTCATCGTGCAACGCGCGGGCAAAGCAAAATGCTGCCTTGGAGCATTTCATCTCCAAGACGGAACAAAATGAAGCTTTATTATCCATCACCGATACATCTGATAAATCGGACGATTTGCATGTTATGAACGAGAAGCAGAACAACGCCTTTGTTGTGGTCACCACGGAAAAACGTAGCGACGGTTTTATAGCGATATCCGAGCTTAAGCACAGCAACATACGGTTCATCGTAGAAGGCAAGGAAGACGAGAACATTCATGTACTCCAAGTGGATCAGAATCACCGAAATGCTCTCGATATGATTGCTATGGATAAGCAAAACGATGCGGCGCACATTGTATCGACAGAATCCGTAGACAATGCGCTCGATGAAACAATCAGACAAAACGATATATCCACAATGCACTTAATTCAATCttctaaacaaaataatactctaaatataatatcgaaacaGAACGAATCGCTACCTGTTTTAGCGATACCGAATCCCCAGAGCCACGAAAATTACTCCAGCCAAATCATACAAGTGAGCAGTACTGATATACCTATGGACGTAATGACTGAGCAAACCTTAAAAGAGGAAATAGATCAAGACGAACAAGATACTTTAGTGGGAACATCTCAGGAAGAGACATCTCATGTTATCCAAGTTGTACAGTATCAACCGCATGACAGTGACGATGGAGAGGATTTTACTTGCGAGATCTGCGAAGAAACTTTCGCTGACAAAAATATGCTGAAAGAACATATTAAGGTTCACATATAA
- Protein Sequence
- METHESEQYVTFPLDGVHDAIQENMISHEEICEPVECVDECVLQEDLTEVSVSNANNTDIAESQEAVEILTERSDEEDDNQVVYPMYIKQEEQQQYTSGDDESLAVEALRQLGGMYPCFENKKISCPICKCLFTQEEMVEHRSVCTVSKLSCITCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQAHMLQVHQVERPHKCTICGLDFQRPSSLSNHMKIHTYVAGRAIMQSQGNNISQSVETFRKWSENASDSQNTSQMPSSSSVQSIQNYDVCQVQWPVSSYNFHNEQSTVTTISNHQEKMDTLQEFTVMPNGEVTQFSEYTEQNNISNPVNNSQHYDISINSFNTPDGIVKVETLSYNNANRKSYGKVETNSSKQYTCKHCGINFSRATALASHEKIHTSKNWNMPIECAYCDKQFQNGNHLANHQITCAKKIMQNNIEQGVPNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASNPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNDASPKSKPMKKKSSKSTSSCNARAKQNAALEHFISKTEQNEALLSITDTSDKSDDLHVMNEKQNNAFVVVTTEKRSDGFIAISELKHSNIRFIVEGKEDENIHVLQVDQNHRNALDMIAMDKQNDAAHIVSTESVDNALDETIRQNDISTMHLIQSSKQNNTLNIISKQNESLPVLAIPNPQSHENYSSQIIQVSSTDIPMDVMTEQTLKEEIDQDEQDTLVGTSQEETSHVIQVVQYQPHDSDDGEDFTCEICEETFADKNMLKEHIKVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476432;
- 90% Identity
- iTF_00729521;
- 80% Identity
- -