Tlon009839.1
Basic Information
- Insect
- Temnothorax longispinosus
- Gene Symbol
- -
- Assembly
- GCA_004794745.1
- Location
- QBLH01003108.1:360275-363106[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.19 15 5.9 0.0 2 20 122 139 121 141 0.78 2 14 0.00035 0.027 14.5 1.4 2 20 149 167 148 170 0.94 3 14 0.00096 0.075 13.1 1.1 1 23 176 199 176 199 0.94 4 14 9.4e-06 0.00073 19.4 1.5 1 23 207 229 207 229 0.98 5 14 1e-05 0.00081 19.3 0.7 1 23 389 411 389 411 0.98 6 14 0.0016 0.12 12.4 0.2 2 22 421 441 420 441 0.93 7 14 0.00023 0.018 15.0 2.6 1 20 463 482 463 485 0.92 8 14 0.014 1.1 9.4 0.5 1 23 490 513 490 513 0.95 9 14 7.5e-07 5.9e-05 22.8 0.6 1 23 519 541 519 541 0.99 10 14 0.00011 0.0087 16.0 2.2 1 23 548 570 548 570 0.99 11 14 0.00027 0.021 14.8 0.4 3 23 578 598 576 598 0.97 12 14 0.00031 0.024 14.6 0.2 1 23 604 627 604 627 0.96 13 14 0.14 11 6.2 0.2 1 23 641 663 641 663 0.94 14 14 0.00014 0.011 15.7 0.1 1 23 920 942 920 942 0.98
Sequence Information
- Coding Sequence
- ATGGAGACCCACGAGGGGGAGCAGTACGTGACATTTCCCCTCGCCGAGGTGCACGATGTCATAGAGGAGAACATGATATCTCACGAGGAGGTATGCGAGCCTGTCAACGAATGCGTTCTCCAGGAAGGNCTTGCGGAGGTCACGGTCGGTAATACTGCCACCGTTGACATCGTGGAGTCACAGGGTACCGTTGAGATCCTTGCGGAACAGTCGGAAGAGGAAGATGACAATCAAGTGGTATATCCGATGTATATCAAGCAAGAGGAACAGCAGCAGTATACGTCGGGTGACGACGAGTCCATGGCTGTGGAAGCTCTGCGTCAGCTGGGCGGTATGTATCCATGCTTCGAGGATAAGAAGATCAGTTGTCCGATCTGTAAGCGTCTCTTCACCCAAGAGGATATGGTTGAACATCAGTCTGTGTGTCAGTCGTCGCCTAAATTATCCTGCACCACTTGCGGGGAGAGATTTGAGAGAAAGATTGACTTGAATAACCACATGGTTTGTCATCAAGTGGATCGTCCTCATGCGTGTAGAACGTGCGGCAACTTGTTCCGTTCCAAGAACAGTTTGCAGGCACACATGCTACAGGCGCACATGCATCACGTCGAACGGCCGCACAAGTGTACCATCTGTGGCTCCGACTTCCAGAGGCCTTCCAGCTTGTCCAACCACATGAAGATACACACGTACGTCGCGGGACGAGCCATCATGCAATCACAGGGTAATAATATGTCTCAATCGGTGGAGACATTTAGAAAGTGGCCGGAAAACGCGTCTGATTCGCAGAACGCTTCTCAGATACCATCTTCTTCGTCTGTCCAGTCTATACAGAACTACGACGTGTGTCAAGTTCAATGGCCGGTCTCGTCATACAATTTCAGCAGCGAACAATCGATAGTTACCACAATGTCGAATCACCAGGATGCCAAGATGGATACGCTGCAAGAGTTTACGGTAATGCCCAATGGTGAAGTGGCGCAATTTAGCGAGTACACCGAGCAAAATAATATCAGCGATTCGGTCAATAACAGTCAACAGTATGACATAACGATAAATTCATTCAACACTCCCGACGGGATAGTCAAAGTCGAGACGCTTTACAGATACAACAGTACGAATAAAAGAGATTACGGGGAAGCTGAAGTAAACAACAGTAAGCAGTACACGTGTAAGCATTGCGGAGTCAATTTTTCACGCGCGACCGCGTTGGCGTCTCACGAGAAGATTCATGCCTCCAAGACCTGGAATATGCCGATCGAGTGCGAGTACTGCGACAAGCAGTTTCAGGACGGCAATCATTTGGCGAACCACCAGATCACGTGCGCCAAGAAAATAATGCAGAACAACATCGAGCAAGGTATGCCTAACAATAAATGGGGCAAGCACGCTTGTTCGGAATGCGGGAAGAAATTTACCACGAAGCAGAAGATGTTTCGCCACCAGTGGATCCATCGCAAGAAGACTCACTCGTGCGAGGTTTGCGGCTCGCAGTTTGAGAAGCAGAACGAGCTGGATGAGCACAGATTGTCGGCGCACCCCGGAGACTCGCCGTTTACTTGCACCGACTGCGGAAAGAGCTTCGTTTCGCGACAAGGCCTTTGGGAGCACAGCAGAACGCATGCCGGTAGTCCGGCCCATTTTCAGTGCGACACCTGCTCGAAAACGTTCTCGTCGCGCCAGGGATACTTAATACACAATCGTACGCATACCGGTGAACGTCCGTACGGCTGCAAATTCTGCTGGAAAGCATTTCGAGACGGCGGAACTTTGAGGAAGCACGAGCGGATTCACACGGGGGAGAGACCGCACGTGTGCCCGTTGTGCTCGAGGGCTTTTAATCAGAAGGTGGTCCTGCGCGAGCATGTTCGATGGGTCCACGCGGCGGGGAAAAACGAGACGGAAGCGAGCAGTCCTCCGTATCAGTGTCCGCTTTGCGGTGCTCTCAATCAGGATCGCGACGAGCTCTGCGCGCACATAGTCAAGCATTCGGATCAGATGATAGCCGAGGCAAAAGCGAAAACTAACAACGACACCTCGCCGAAGTCGAAGCCAACGAAGAAGAAATCGTCGAAATCGGGCGGCTCGAACGCGCAGACGAAGCAGAACGCTTTGGACTTTATTCCGAAGACGGAGCAAAACGAAGCCTTATTGTCCATCACAGATCCATCCGACAAATCGGACGAGATGCATGTTNTNAATGAGAAGCAAANCAACGCGTTTGTCGTGGTCACTACGGAGAAACGTAGCGACGGTTTCATAGCGATATCTGAGCTCAAGCACAGCAACATACGGTTTATCGTGGATGGCAAGGAAGATGAGAATATTCAGGTGCTTCGAGTGGAACAAGATCACAGGGATTCTCTCGATATAATTGCCATAGANAAACAAAACGACGCGGCGAACATCGTGTCCACAGAATCCGTGGACGACGCACTCGATGAAACAGTCAGGCAGGATGACATGTCCACGATGCACTTGATTCAGTCTCCTAAGCAGGACAACACTCTAAATATCATCTCGAAACAGAACGAATCGCTGCCCGTTCTAACGATACCAAATCCGCAGGGTCACGAGAATTACTCCAGTCAGATCGTACAGATAAGCGGTGCGGATATATCTATGAACGTTGTGACTGAACAAGACCTGAAGGAGGGAAAGAATCATATCCAAGACGAGCAGGATTCTTTAATGTCGGACGAAACGTCGCATGTTATTGTACAGTATCAGCAGCACGACAGCGACGATGGAGATGATTTTGTCTGCGGTATCTGCGAGGAGAAATTTGATGGCAAAACTATGTTGAAGGAGCACATCAagatacacatataa
- Protein Sequence
- METHEGEQYVTFPLAEVHDVIEENMISHEEVCEPVNECVLQEGLAEVTVGNTATVDIVESQGTVEILAEQSEEEDDNQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKISCPICKRLFTQEDMVEHQSVCQSSPKLSCTTCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKNSLQAHMLQAHMHHVERPHKCTICGSDFQRPSSLSNHMKIHTYVAGRAIMQSQGNNMSQSVETFRKWPENASDSQNASQIPSSSSVQSIQNYDVCQVQWPVSSYNFSSEQSIVTTMSNHQDAKMDTLQEFTVMPNGEVAQFSEYTEQNNISDSVNNSQQYDITINSFNTPDGIVKVETLYRYNSTNKRDYGEAEVNNSKQYTCKHCGVNFSRATALASHEKIHASKTWNMPIECEYCDKQFQDGNHLANHQITCAKKIMQNNIEQGMPNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCTDCGKSFVSRQGLWEHSRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASSPPYQCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNDTSPKSKPTKKKSSKSGGSNAQTKQNALDFIPKTEQNEALLSITDPSDKSDEMHVXNEKQXNAFVVVTTEKRSDGFIAISELKHSNIRFIVDGKEDENIQVLRVEQDHRDSLDIIAIXKQNDAANIVSTESVDDALDETVRQDDMSTMHLIQSPKQDNTLNIISKQNESLPVLTIPNPQGHENYSSQIVQISGADISMNVVTEQDLKEGKNHIQDEQDSLMSDETSHVIVQYQQHDSDDGDDFVCGICEEKFDGKTMLKEHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476432;
- 90% Identity
- iTF_00127657;
- 80% Identity
- -