Amia021429.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- -
- Assembly
- GCA_003063725.1
- Location
- NJRN01000156.1:473789-476614[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8 2e+02 3.2 0.1 2 20 122 139 121 141 0.78 2 14 0.00046 0.052 14.5 1.4 2 20 149 167 148 170 0.94 3 14 0.00026 0.03 15.2 1.1 1 23 176 199 176 199 0.94 4 14 1.2e-05 0.0014 19.4 1.5 1 23 207 229 207 229 0.98 5 14 2.1e-05 0.0024 18.7 0.7 1 23 388 410 388 410 0.98 6 14 0.0034 0.39 11.7 0.3 2 21 420 439 419 440 0.93 7 14 0.00031 0.035 15.0 2.6 1 20 462 481 462 484 0.92 8 14 0.018 2.1 9.4 0.5 1 23 489 512 489 512 0.95 9 14 1.3e-06 0.00015 22.5 0.3 1 23 518 540 518 540 0.98 10 14 0.00015 0.017 16.0 2.2 1 23 547 569 547 569 0.99 11 14 0.00036 0.041 14.8 0.4 3 23 577 597 575 597 0.97 12 14 0.00041 0.047 14.6 0.2 1 23 603 626 603 626 0.96 13 14 0.71 81 4.4 0.2 1 23 640 662 640 662 0.92 14 14 2e-05 0.0023 18.8 0.2 1 23 918 940 918 940 0.98
Sequence Information
- Coding Sequence
- ATGGAGACCCACGAGGGAGAGCAGTATGTGACGTTTCCCCTCACCGAGGTGCATGATGCCATAGAGGAGAACATGATATCGCACGAGGAGATATGTGAGCCTGTCGACGAATGTGTTCTCCAGGAGGGCCTTACGGAGGTCACGGTCAGtaacactgccagtactgacaTTGTGGAGACGCACAGTACCGTTGAGATCCTTGCGGAACAGTCAGAAGAGGAAGACGACAACCAGGTGGTGTATCCTATGTATATCAAGCAGGAGGAACAGCAACAGTATACATCGGGTGACGATGAATCCATGGCTGTGGAAGCTCTGCGACAACTGGGCGGTATGTACCCGTGCTTCGAGGACAAGAAGATCAGTTGTCCTGTCTGTAAACATCTCTTTACCCAAGAAGAAATGGTTGAACATCAATCTATATGTCAGTCAGCACCTAAGCTATCCTGCACCACTTGCGGAGAGAGATTTGagagaaaaattgatttaaataatcaCATGGTTTGTCATCAAGTGGATCGTCCTCATGCTTGCAGAACATGCGGCAATTTGTTCCGTTCCAAGAGCAGTTTGCAGGCACATATGTTACAGGCGCACATGCATCATGTCGAACGGCCGCACAAATGTACTATCTGTGGCTCGGACTTCCAGAGGCCTTCCAGCTTGTCCAATCACATGAAGATACACACTTATGTCGCGGGACGAGCCATCATGCAGTCACAGAGTAATAATATGTCTCAATCGGTGGAAACATTCAGGAAATGGCCGGAAAATGCGTCTGATTCACAGAATGCTTCTCAAATACCATCTTCGTCTGTCCAAACTATACAGAACTACGACGTGTGTCAAGTTCAATGGCCGGTTTCGTCGTACAATTTTAATAGCGAGCCATCGATAGTTGCCACAATGTCGAATCATCAGGATACCAAAATGGATACATTGCAGGAGTTTACAGTGATGCCCAATGGTGAAGTAACACAATTTAGCGAGTATACCGAGCAAAATAATATCAGCGATTCAGTCAGCAATAATCAACAGTATGATATAACGATAAATTCGTTCAACACTCCCGACGGGATAGTCAAAGTCGAGACACTTTACAGATACAATAATGCGAATAAAAGAGATTACGGAGAAACTGAAGTGGACAACAGTAAACAATTCACATGTAAACATTGTGGAACCAATTTTCCACGCGCAACCGCGTTGGCATCTCACGAGAAGATTCATACTTCGAAAAACTGGAATATGCCGATCGAGTGCGAATACTGCGACAAACAGTTTCAGGACGGTAATCATTTGGCGACTCATCAGACCACCTGCGCCAAGAAGATAATGCAGAACAACATCGAGCAAGGTGTGCCCAACAATAAATGGGGCAAGCATGCTTGCTCGGAATGCGGAAAGAAATTCACAACCAAGCAGAAGATGTTTCGCCACCAGTGGATCCATCGCAAGAAGACTCACTCATGTGAAGTGTGCGGTTCGCAATTTGAAAAGCAGAACGAGCTGGATGAACATCGATTATCAGCACATCCCGGAGATTCGCCGTTTACCTGTACGGAATGCGGGAAGAGCTTCGTGTCGCGGCAAGGTCTTTGGGAACACGGTAGAACGCACGCCGGAAGTCCGGCCCATTTTCAATGCGACACCTGTTCGAAAACGTTCTCATCTCGCCAGGGATACTTAATACACAATCGTACGCATACCGGTGAACGACCGTACGGCTGCAAGTTCTGCTGGAAGGCGTTTCGAGACGGTGGAACTTTGAGGAAGCATGAGCGGATCCACACGGGGGAGAGACCGCACGTGTGTCCGTTATGCTCGAGGGCTTTTAATCAGAAGGTGGTTCTGCGCGAACATGTTCGATGGGTTCATGCAGCGGGAAAAAACGAGACAGAAGCGAGCAGTCCTCCGTATAACTGTCCGCTTTGCGGTGCTCTGAATCAGGATCGCGACGAGCTCTGCGCGCATATCGTCAAGCATTCGGATCAGATGATAGCAGAAGCAAAAGCGAAAACTAGCAACGATACCTCTCCAAAATCGAAGCCATCGAAGAAAAAATCGAAGTCGGCATCGTGCGGCACGAACGCACAGACGAAACAGAACGCCTTGGACTTTATCTCAAAGACGGAACAAAACGAAGCCTTATTGTCCATCACAGATACATCCGATAAGTCAGACGATATGCATGTTATGAATGAGAAGCATGATAACGCGTTTGTTTTTGTTACCACGGAAAAACGTAGCGACGGTTTTATAGCGATATCCGAGCTCAAGCATAGCAACATACGATTTATCGTAGACGGCAAAGAAGGTGAGAATATTCAGGTACTTCAAGTGGAACAGGATCATAGGGACCCTCTCGATATAATTGCTATAGATAAGCAAAATGACGCGGCGAACATCGTGTCCGCAGAATCCGTGGACGATGCACTCGATGAAACGGTCAGGCAAAATGACATGTCTACAATGCATTTGATTCAGTCTCCTAAGCAGAACAACACTCTAAATATAATATCGAAGCAGAATGAATCGCTGCCCGTTCTAGCGATACCAAATCCACAGAGTCACGAAAATTACTCGAGTCAGATCGTACAGATAAGTGGTGCAGATATTCCTATGAACATTGTGAATCAACAAGCCCTGAAAGAGGAGAATCATATCCAAGACGAACGAGATTCTTTAATGCCGGACGAAACATCGCACGTTATTGTACAGTATCAGCACGACAGCGACGATGGAGATGATTTTGTCTGCGGAATCTGCGAGGAAAAATTTGATGACAAAACTACGTTGAAGGAGCACATcaagatacatatataa
- Protein Sequence
- METHEGEQYVTFPLTEVHDAIEENMISHEEICEPVDECVLQEGLTEVTVSNTASTDIVETHSTVEILAEQSEEEDDNQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKISCPVCKHLFTQEEMVEHQSICQSAPKLSCTTCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQAHMLQAHMHHVERPHKCTICGSDFQRPSSLSNHMKIHTYVAGRAIMQSQSNNMSQSVETFRKWPENASDSQNASQIPSSSVQTIQNYDVCQVQWPVSSYNFNSEPSIVATMSNHQDTKMDTLQEFTVMPNGEVTQFSEYTEQNNISDSVSNNQQYDITINSFNTPDGIVKVETLYRYNNANKRDYGETEVDNSKQFTCKHCGTNFPRATALASHEKIHTSKNWNMPIECEYCDKQFQDGNHLATHQTTCAKKIMQNNIEQGVPNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASSPPYNCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTSNDTSPKSKPSKKKSKSASCGTNAQTKQNALDFISKTEQNEALLSITDTSDKSDDMHVMNEKHDNAFVFVTTEKRSDGFIAISELKHSNIRFIVDGKEGENIQVLQVEQDHRDPLDIIAIDKQNDAANIVSAESVDDALDETVRQNDMSTMHLIQSPKQNNTLNIISKQNESLPVLAIPNPQSHENYSSQIVQISGADIPMNIVNQQALKEENHIQDERDSLMPDETSHVIVQYQHDSDDGDDFVCGICEEKFDDKTTLKEHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476432;
- 90% Identity
- iTF_00127657;
- 80% Identity
- -