Nful013822.1
Basic Information
- Insect
- Nylanderia fulva
- Gene Symbol
- -
- Assembly
- GCA_005281655.1
- Location
- NW:3128762-3133320[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00021 0.017 15.3 1.0 2 20 148 166 147 169 0.95 2 13 0.00023 0.019 15.1 1.2 1 23 175 198 175 198 0.93 3 13 1e-05 0.00082 19.4 1.5 1 23 204 226 204 226 0.98 4 13 7.3e-06 0.00059 19.9 0.8 1 23 383 405 383 405 0.98 5 13 0.0022 0.18 12.1 0.3 2 21 415 434 414 435 0.93 6 13 0.00025 0.02 15.0 2.6 1 20 457 476 457 479 0.92 7 13 0.015 1.2 9.4 0.5 1 23 484 507 484 507 0.95 8 13 3.5e-06 0.00028 20.9 0.1 1 23 513 535 513 535 0.98 9 13 0.00012 0.0098 16.0 2.2 1 23 542 564 542 564 0.99 10 13 0.0003 0.024 14.8 0.4 3 23 572 592 570 592 0.97 11 13 0.0015 0.12 12.6 0.1 1 23 598 621 598 621 0.96 12 13 0.42 33 4.9 0.1 1 23 635 657 635 657 0.93 13 13 3e-06 0.00024 21.1 0.2 1 23 916 938 916 938 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTCACGAGGGCGAGCAGTATGTGACATTTCCACTCGACGGTGTGCACGATGCCATACAGGAGAATATGATATCCCACGAGGAGATATGCGAGCCCGTCGAGTGCGTCGACGAATGCGTTCTCCAGGAGGAACTCGCGGAAGTCCCGGTGAATAACTCTAGCAACACTGACATTGCTGAGTCGCAGGATGCTGTTGAAATTCTTACGGAACAGTCTGACGAAGAGGAGGTGGTGTATCCGATGTACATCAAGCAAGAGGAACAGCAGCAATACACGTCTGGTGACGACGAATCCATGGCTGTGGAAGCTTTGCGTCAGTTGGGTGGTATGTATCCTTGCTTCGAGAACAAGAAAGTCAGCTGTCTGATCTGTAAGTGTCTCTTTACTGAAGAAGAGATGGTTGAGCATCGATCGGTATGTACAGCGTCTAAGCTATCCTGTACTGTTTGCGGAGAGAGATTTGAAAGGAAGATCGATCTGAATAATCACATGGTGTGTCATCAGGTGGATCGTCCTCACGCATGTAGAACGTGTGGTAATTTATTTCGTTCTAAGAGCAGTTTGCAAGCACACATGCTGCAGGTACATCAAGTTGAACGTCCACACAAATGCACCATCTGCGGCTCAGACTTCCAGAGACCCTCTAGCTTGTCTAATCACATGAAGATACATACTTACGTGGCGGGACGAGCAATCATGCAGTCACAGGGGAACAATATGTCCCAACCAACGGAAACGTTCAGGAAGTGGTCGGAGAACGCATCCGATTCGCAAAATACGTCTCAGATGCCATCCTCTTCGTCTGTTCAATCTATACAGAATTATGATGTGTGTCAGGTTCAATGGCCGGTCTCGTCGTACAATTTTCATAACGAACAATCGACAGTTACCGCAATAGCGAATCATCAGGAGAAGATGGATACTCTGCAGGAATTCACTGTAATGCCTAATGGTGAAGTAACGCAATTCGAGTACACTGAACAAAATAATATCGGTAATCCAGTCAACAACAGTCAACAATATGATATATCGATAAACTCGTTTAATACTCCGGACGGAATAGTTAAAGTCGAGACACTTTCGTATAATAACGCGAATAGAAAAAATTACGGGGAAGCGGAAACAAACAGCGGTAAACAGTACACGTGTAAACATTGCGGAATCAATTTTACACGCGCGACTGCGTTGGCATCTCACGAGAAGATTCACACTTCCAAAAACTGGAACATGCCGATCGAGTGCGAATATTGTGACAAACAGTTTCAAGATGGGAATCACTTGGCGAATCATCAGACCACCTGCGCCAAGAAGATAATGCAGAACAACATAGAGCAAGGCGTGCCCAACAACAAGTGGGGCAAGCACGCTTGTTCCGAGTGCGGAAAAAAGTTCACGACCAAGCAGAAGATGTTTCGCCATCAGTGGATCCACCGGAAGAAGACACACTCGTGCGAAGTGTGCGGTTCACAATTTGAGAAGCAGAACGAGCTGGACGAGCATAGACTGTCGGCGCATCCTGGAGACTCGCCGTTCACTTGCGCCGAATGCGGAAAGAGCTTCGTGTCCCGACAAGGTCTCTGGGAACACGGAAGAACGCACGCTGGGAGTCCGGCGCACTTTCAATGCGACACCTGCTCGAAAACCTTTTCGTCTCGCCAAGGATACTTGATACACAATCGTACGCATACCGGCGAGCGACCGTACGGCTGCAAGTTTTGCTGGAAGGCGTTCCGGGATGGCGGGACCTTGAGGAAGCACGAACGGATCCACACCGGGGAGCGACCGCACGTGTGTCCGTTGTGCGCGAGGGCATTCAATCAGAAGGTAGTCTTGCGCGAACATGTTCGGTGGGTTCACGCCGCGGGAAAGAACGAGACGGAAGCGACCAGTCCTCCGTATCCTTGTCCTTTGTGCGGTGCTCTTAATCAAGACCGCGACGAGCTCTGCGCGCACATCGTTAAGCATTCGGATCAGATGATAGCCGAAGCAAAGGCGAAGACTAACAACGACGCCTCTGCGAAGTCGAAGCCAACGAAGAAGAAATCAGCCAAGTCGTGCAACGCACGGATAAAGCAAAATTCCTTGGACCATTTCATCTCCAAGACGGAACAGAATGAAGCCTTGTTATCCATCACCGATACGTCTGATAAATCGGACGATTTGCACGGTATGAACGAGAAGCAGAGCAACGCCTACGTCGTGGTCACCACGGAGAAACGTGGCGATGGCTACATAGCGATATCCGAGCTTAAGCACAGCAATATACGGTTCATCGTGGAAGGTAAAGAAGATGAGAACATTCACGTACTTCAAGTGGATCAGAATTCTCACCGGAATTCTCTCAATATGATTGCTATGGATAAGCAAAACGACGCGGTACGTATCGTGTCTGAAACCGTGGATAATGCGCTCGGCGAAACGATCAGgcaaaataatatatctacGATGCACTTAATTCAATCTTCTAAACAGAACAATACTCTAAATATAATATCGAAGCAGAACGAATCGCTACCTGTTTTAGCGATACCGAATCCCCAGAGCCACGAAAATTATTCCAGCCAGATCATACAAGTGAGCAGTGAAGATATACCTATGGATGTACTGACCGATCAAACCTTGAAAGAGGAGAGAGATCAGGATGAGCAGGATACTTTAGTAGGAACATCTCAGGAAGGGACATCTCATGTTATCCAAGTTGTACAGTATCACCAGCATGATAGTGATGACGGAGAGGATTTTACTTGCGAGATCTGCGAAGAAACTTTTGCTGACAAAAATATGTTGAAAGAACATATTAAGGTTCACATATAA
- Protein Sequence
- METHEGEQYVTFPLDGVHDAIQENMISHEEICEPVECVDECVLQEELAEVPVNNSSNTDIAESQDAVEILTEQSDEEEVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFENKKVSCLICKCLFTEEEMVEHRSVCTASKLSCTVCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQAHMLQVHQVERPHKCTICGSDFQRPSSLSNHMKIHTYVAGRAIMQSQGNNMSQPTETFRKWSENASDSQNTSQMPSSSSVQSIQNYDVCQVQWPVSSYNFHNEQSTVTAIANHQEKMDTLQEFTVMPNGEVTQFEYTEQNNIGNPVNNSQQYDISINSFNTPDGIVKVETLSYNNANRKNYGEAETNSGKQYTCKHCGINFTRATALASHEKIHTSKNWNMPIECEYCDKQFQDGNHLANHQTTCAKKIMQNNIEQGVPNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCAECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCARAFNQKVVLREHVRWVHAAGKNETEATSPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNDASAKSKPTKKKSAKSCNARIKQNSLDHFISKTEQNEALLSITDTSDKSDDLHGMNEKQSNAYVVVTTEKRGDGYIAISELKHSNIRFIVEGKEDENIHVLQVDQNSHRNSLNMIAMDKQNDAVRIVSETVDNALGETIRQNNISTMHLIQSSKQNNTLNIISKQNESLPVLAIPNPQSHENYSSQIIQVSSEDIPMDVLTDQTLKEERDQDEQDTLVGTSQEGTSHVIQVVQYHQHDSDDGEDFTCEICEETFADKNMLKEHIKVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476432;
- 90% Identity
- iTF_00729521;
- 80% Identity
- -