Lnig014216.1
Basic Information
- Insect
- Lasius niger
- Gene Symbol
- -
- Assembly
- GCA_001045655.1
- Location
- LBMM01004296.1:11375-14787[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00019 0.02 15.3 1.0 2 20 126 144 125 147 0.95 2 13 0.0011 0.11 13.0 2.8 1 23 153 176 153 176 0.93 3 13 9.3e-06 0.001 19.4 1.5 1 23 182 204 182 204 0.98 4 13 1.6e-05 0.0017 18.7 0.4 1 23 363 385 363 385 0.97 5 13 0.0002 0.021 15.3 0.6 2 21 395 414 394 415 0.93 6 13 0.00023 0.025 15.0 2.6 1 20 437 456 437 459 0.92 7 13 0.014 1.5 9.5 0.5 1 23 464 487 464 487 0.95 8 13 1.1e-06 0.00012 22.3 0.3 1 23 493 515 493 515 0.98 9 13 0.00011 0.012 16.1 2.2 1 23 522 544 522 544 0.99 10 13 0.00027 0.029 14.8 0.4 3 23 552 572 550 572 0.97 11 13 0.00031 0.033 14.6 0.2 1 23 578 601 578 601 0.96 12 13 0.49 53 4.6 0.1 1 23 615 637 615 637 0.92 13 13 2.7e-06 0.00029 21.1 0.2 1 23 900 922 900 922 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTCACGAGAGCGAACAGTACGTGACGTTTCCTCTCGACGGTGTGCATGATGCCATacaagagaatataatatctcACGAGGAGATATGCGAACCTGTCGACGAATGCGTCCTGCAGGAGGAGCTTGCGGAAGTCCCGGTTAGTAACGCTAATAATACTGATATTGCTGAGTCACAAGATACCGCTGAAATTCTTACGGAACAGTCGGACGAAGAGGATGACAATCAGGTGGTGTATCCGATGTACATCAAGCAAGAGGAACAGCAGCAGTACACGTCGGGTGACGATGAGTCCATGGCTGTGGAAGCTTTGCGTCAACTGGGTGAAGAGATGGTTGAACATCGGTCTGTATGTACAACGTCTAAGCTATCCTGCACCGTTTGCGGAGAGAGATTTGAGAGGAAGATCGACCTGAATAATCATATGGTATGTCATCAGGTGGATCGTCCTCACGCATGTAGGACATGcggtaatttattttgttctaaGAGCAGTTTACAAGCACACATGCTGCAGGTACATCAGGTCGAACGTCCGCACAAATGCACCATCTGTGGCTCGGACTTTCAGAGGCCCTCCAGCTTGTCTAACCACATgaagatacatacatacatcgcgGGACGAGCGATCATGCAGTCACAGGGAAACAATATGTCTCAATCAGCGGAAACGTTCAAGAAGTGGCCGGAGAACGCGTCCGATTCGCAAAATACATCTCAGATGccatcttcttcttcgtctgtTCAATCTATACAGAATTATGATGTGTGTCAAGTTCAGTGGCCGGTCTCGTCATACAATTTTCATAACGAACAATCGACAGTTACCGCAATATCGAATCATCAGGAGAAGATGGATACGCTGCAGGAATTCACTGTAATGCCTAACGGTGAGGTGACGCAATTCAACGAGTACACTGAGCAAAATAATATCGGTAATCCAGTCAACAACAGTCAACAAtacgatatatcgataaattcgTTCAATACCCCCGACGGAATAGTCAAAGTCGAGACGCTTTCGTATAATAACGcgaacagaaaaaattatgtagaagTCGAAACGAACAGCAGTAAACAGTACGCGTGCAAGCATTGCGGAATCAATTTTTCACGCGCGACTGCGTTGGCGTCCCACGAGAAGATACACACTTCCAAAAACTGGAACATGCCGATCGAGTGCGAGTACTGCGACAAGCAGTTTCAAGACAGGAATCACTTGGCGACCCATCAGACCACCTGCGCCAAGAAGATAATGCAGAACAACATAGAGCAAGGCGTGCCCAACAACAAGTGGAGCAAGCACGCTTGTTCCGAGTGCGGAAAGAAGTTCACGACCAAGCAGAAGATGTTTCGTCATCAGTGGATCCACCGGAAGAAGACGCACTCGTGCGAAGTATGCGGTTCGCAGTTTGAGAAGCAGAACGAGCTGGATGAGCATAGATTGTCGGCGCATCCCGGAGATTCGCCGTTCACTTGCTCCGAATGCGGAAAGAGCTTCGTGTCGCGGCAAGGTCTCTGGGAACACGGTAGAACGCACGCGGGGAGTCCGGCGCATTTTCAATGCGACACCTGCTCGAAAACCTTTTCGTCTCGCCAGGGATATTTAATACACAATCGTACGCATACCGGCGAACGACCGTACGGCTGCAAGTTTTGCTGGAAAGCGTTTCGGGACGGCGGGACCTTGAGGAAGCACGAACGGATCCACACCGGGGAGCGACCGCACGTATGTCCGTTATGCTCGAGGGCTTTCAATCAGAAAGTAGTCTTGCGCGAACATGTTCGGTGGGTCCACGCCGCGGGAAAGAACGAGACGGAAGCTAGCAGTCCTCCGTTTCCTTGTCCCCTGTGCGGTGCTCTGAATCAAGATCGCGACGAGCTCTGCGCGCACATCGTTAAGCATTCGGATCAGATGATAGCCGAGGCAAAGGCGAAGACTAACAACGACGCCTCTCCAAAGTCGAAGCCAACGAAGAAGAAGTCGTCGAAGTCGACGTCGTCGTGCAATACTAGGGCGAAGCAAACTGCCTTGGAGCATTTCATCTCCAAGACGGAACAAAATGAAGCCTTATTATCCATCACCGATACGTCCGATAAATCGGAAGATTTGCACGTTATGAACGAGAAGCAGAACAACGCCTTCGTCGTGGTCACCACGGAGAAACGTAGCGACGGCTTCATAGCGATATCCGAGCTTAAGCACAGCAACATACGGTTCATCGTGGAAGGCAAGGGAAACGAGAACATTCACGTACTCCAAGTGGATCAGAATTCTCACCGGAATTCTCTCGATATGATTGCTATGGATAAGCAGAACGACGCGGCGCACATCGTGTCGACAGAATCCATGGACAATGCGCTTGATGAAACGATCAGACAAAACAATATATCCACGATGCACTTAATTCAATCTTCTAAACAGAATAAtactctaaatataatatcgaaacaGAACGAATCGCTGCCTGTTCTAGCGATACCGAATCCCCAGAGCCACGAAAATTACTCCAGCCAGATAATACAAGTGAGCAGTACGGATATACCTATGGACGTAATGACTCAGCAAACCttaaaagaggaaagagatcAAGATGAGCAGGATACTTTGGTAGGAACATCTCAGGAAGGGGCATCTCATGTTATCCAAGTTGTACAGTATCATCAGCATGACAGCGACGACGGAGAGGATTTTACTTGCGAGATCTGCGAAGAAACTTTTGCTGACAAAAATATGTTGAAAGAACATATTAAGGTTCACATATAA
- Protein Sequence
- METHESEQYVTFPLDGVHDAIQENIISHEEICEPVDECVLQEELAEVPVSNANNTDIAESQDTAEILTEQSDEEDDNQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGEEMVEHRSVCTTSKLSCTVCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFCSKSSLQAHMLQVHQVERPHKCTICGSDFQRPSSLSNHMKIHTYIAGRAIMQSQGNNMSQSAETFKKWPENASDSQNTSQMPSSSSSVQSIQNYDVCQVQWPVSSYNFHNEQSTVTAISNHQEKMDTLQEFTVMPNGEVTQFNEYTEQNNIGNPVNNSQQYDISINSFNTPDGIVKVETLSYNNANRKNYVEVETNSSKQYACKHCGINFSRATALASHEKIHTSKNWNMPIECEYCDKQFQDRNHLATHQTTCAKKIMQNNIEQGVPNNKWSKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCSECGKSFVSRQGLWEHGRTHAGSPAHFQCDTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASSPPFPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNDASPKSKPTKKKSSKSTSSCNTRAKQTALEHFISKTEQNEALLSITDTSDKSEDLHVMNEKQNNAFVVVTTEKRSDGFIAISELKHSNIRFIVEGKGNENIHVLQVDQNSHRNSLDMIAMDKQNDAAHIVSTESMDNALDETIRQNNISTMHLIQSSKQNNTLNIISKQNESLPVLAIPNPQSHENYSSQIIQVSSTDIPMDVMTQQTLKEERDQDEQDTLVGTSQEGASHVIQVVQYHQHDSDDGEDFTCEICEETFADKNMLKEHIKVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476432;
- 90% Identity
- iTF_00729521;
- 80% Identity
- -