Nnoc008386.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomophila noctuella
Gene Symbol
-
Assembly
GCA_958496325.1
Location
OY292489.1:10879842-10900573[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 8.2e-05 0.0066 17.4 2.2 1 23 423 445 423 445 0.97
2 20 0.0043 0.34 12.0 0.6 1 20 451 470 451 473 0.94
3 20 2.1e-05 0.0017 19.3 5.6 1 23 492 514 492 514 0.98
4 20 2e-05 0.0016 19.4 3.9 1 23 520 542 520 542 0.99
5 20 3.6e-05 0.0029 18.6 5.3 1 23 548 570 548 570 0.97
6 20 5.4e-05 0.0044 18.0 8.1 1 23 576 598 576 598 0.97
7 20 7.6e-07 6.1e-05 23.8 2.9 1 23 604 626 604 626 0.97
8 20 0.0001 0.0084 17.1 6.7 1 23 632 654 632 654 0.97
9 20 0.0001 0.0083 17.1 6.5 1 23 660 682 660 682 0.97
10 20 5e-07 4e-05 24.4 1.9 1 23 688 710 688 710 0.98
11 20 5.1e-05 0.0041 18.1 7.9 1 23 716 738 716 738 0.98
12 20 1.8e-05 0.0015 19.5 7.8 1 23 744 766 744 766 0.98
13 20 4.6e-06 0.00037 21.4 5.2 1 23 772 794 772 794 0.98
14 20 2.2e-06 0.00018 22.4 4.7 1 23 800 822 800 822 0.98
15 20 2.5e-05 0.002 19.1 7.1 1 23 828 850 828 850 0.97
16 20 2.5e-05 0.002 19.1 6.1 1 23 856 878 856 878 0.98
17 20 1.8e-05 0.0014 19.5 8.1 1 23 884 906 884 906 0.97
18 20 1.3e-06 0.0001 23.1 4.3 1 23 912 934 912 934 0.97
19 20 0.00075 0.06 14.4 0.3 1 23 941 963 941 963 0.96
20 20 0.19 15 6.8 3.9 1 23 973 995 973 995 0.98

Sequence Information

Coding Sequence
ATGAATCCTGAACATCATAATATCAACACGGGTGGTGGCCAGCCTCCTGGAAGTTCAGAGTCTCAGAACCAAAGGGTTCAAACTgcacagcagcagcagcagcaagcTAATTTGCCTGCTACCACCTCTGCGACCGATCTAAGAGTTAATTCTGCGGCCGTGAACGTCGCTTTGTCTAGTGTCGCCAAATATTGGGTGTTTACAAATTTATTTCCTGGTCCAATACCGCAAGTATCTGTGTATGGCTTGCCAACTGGAGCCAGAATCGAAAATGGAAAGCCTGTACAgGACCTTGGGCAACATGCAAGTATACTCAATGGTGACCCAAATATCATACTGGGCCACCACGGTGGACAACCGCAAGTCACAGTATCTGCAGCTGGGGCTCAGCAAATTCCTGTATCTCAAATTATTGCTACACAATCAGGACAACCACATGAAGCATTGGTGGCCCACAACCAACAACAAGAGCTTGCGGCCCAGCAAGCGTCAGGCACCGCTCAGGTCACTGTTAGTGCAGGCCAACCCACTCATCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCATGTGGGGCATCATTCACAACAGCACTTAATGCAGCAGCAACTTATGGCCAGTGCCCGCCCGGAACACTCAAATCAGcagATTCAGCTGACAGTGAGTGAAGACGGGATCGTGACAGTGGTGGAGCCCGGCGGCAAATTAGTGGACAAAGAGGAACTTCATGAAGCGATCAAGATGCCTACGGACCACCAGACGCTCACCGTGCATCAACTGCAGCAGATTGTTGGGCAACAggttatAGACAGCGTGGTTCGAATAGAGCAGGCCACGGGAGAGCCTGCGAATATCCTTGTTACGCACAACCCTGACGGCACCACCTCCATAGAAGCCAGCGCCGGCGAGCAGCTTATCGTCAAAGACGAGAAAAACGCCGCTAGTGGAAAGATAGAAACCGCACAATTCGCCGAGATAAAAGACATGAAAGGAATTGATTTGAAGGGTGTAGGAGCATTGGGCATGGAAGGCGCAGTTGTAAAAATATCTGGAGGTTCTGAGCATGATCTCCATGCCATGTACAAAGTCAATGTAGAGGATTTATCACAACTGCTGGCCTACCATGAAGTATTTGGAAAGCTGAATACTGATGGACAACCTCAAGCTAAGaCTGTAGAAGTGGAGGTGGAGGCGGGAACCAGTACAGCCATGTCAGCGGAGGAATCCTCGCCGGGCCACCACTCCTGCGACATCTGTGGGAAGATATTCCAATTCAGATACCAACTGATTGTTCATAGACGATATCACGGGGAGAGTAAACCATTTACATGTCAAGTTTGTGGTTCCGCCTTTGCCAATCCGGTTGAATTATCAAGACATGGGAAATGTCATCTTGCCGGGGACCCAGCCGAGAGGCATCAGAAGCGTCTGACGCAAGACAAACCTTACGCTTGCACCACTTGCCATAAAACCTTCTCGCGGAAGGAGCATCTCGACAACCACGTTCGCAGTCACACTGGGGAAACTCCTTACAGATGCGAGTACTGCGCGAAGACGTTCACACGTAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGAGATATGCAAGAAGAGCTTCACAAGGAAGGAGCACTTCATGAACCACGTCATGTGGCACACTGGTGAAACTCCACACCATTGCCAATTATGCGGCAAGAAGTATACTAGGAAGGAGCATTTATTGAACCATATGAGATCGCACACAAACGATACGGCGTTCAGATGCGATCTGTGCGGCAAGTCGTTCACCAGAAAGGAACACTTCACCAATCACATTTTGTGGCATACCGGCGAGACCCCCCACCGCTGCGACTTCTGTTCGAAGACGTTCACGCGCAAGGAGCACCTGCTCAACCACGTCCGCCAGCACACGGGCGAGTCGCCGCACCGCTGCAACTTCTGTTCCAAGTCGTTCACGCGACGCGAGCATCTCGTCAACCACGTGCGGCAGCATACTGGGGAGACGCCGTTCCAGTGCGGATACTGCCCGAAGGCGTTCACGAGGAAGGACCATCTTGTGAACCACGTCCGGCAACACACCGGCGAGTCGCCGCACAAGTGTTCGTTCTGCACGAAGTCGTTCACGCGCAAGGAGCACCTCACGAACCACGTGCGCCAGCACACGGGCGAGTCGCCGCACCGGTGCACGTTCTGCTCCAAGTCTTTCACGAGGAAGGAGCACCTGACTAATCATATACGACAGCACACGGGTGAAACGCCACACAAGTGCACGTACTGCCCGCGCGCCTTCTCGCGCAAGGAGCACCTCAACAACCACGTGCGCCAGCACACCGGCGACATGCCCTACACCTGCACCTACTGCACCAAGAGCTTCACCAGGAAGGAGCATCTCGTCAACCATGTGCGACAACACACAGGCGAGACGCCGTTCAAGTGTTCGTACTGCACGAAATCGTTCTCGAGGAAGGAGCATCTCACGAACCACGTGCACCTTCACACCGGCGAGACTCCGCACAAGTGCGCGTTTTGCACTAAAACATTCTCCAGGAAAGAGCATTTGACTAATCACGTCAGAATCCACACGGGCGAATCGCCGCACCGCTGCGACTTTTGCCAGAAGACGTTCACGCGCAAGGAGCACCTCACGAACCACATGAAGCAGCACACGGGCGACAAGCCGCACGCGTGCAAGGTCTGCTCGAAACCCTTCACGAGGAAGGAGCACCTTATCACGCACATGCGAACGCACAGTTGTGGCGAACGGCCATTCAGCTGTGGCGAATGTGGGAAATCGTTCCCCCTCAAAGGAAACTTGCTGTTCCACGAGCGATCACACAACAAGGGGTCGGGCGGCAATCGGCAGTATCGCTGCGACGTTTGCTCTAAGGATTTCCTATGTAAAGCACACTTAGTAGCACACAGACGAACGCACAATGAAGCAACAGAAAATACAGGCAGCGTTGAAGCACCGCCAGAGATCGAAGACTGTAACGAGTGCACTCCCAAGTGCGAAAAGACCGAGACCGAAAGGCCAGAGAGAAAACATGATATTAGGACGTCCACTGAAAACCGGCCGACGGAAAGCAACGTCCCACAAAGTCAAAATAATGCAACTGTGATGCAAATAACAAGTcagCAAGTGCGGACGGCGACGGGCAcgagcggcagcagcggcggcgcgggcgtgtcGCCGGGCGCCTTCCCGCACGTGCCGCCGCAGCACCACGGCGCCGCGCTCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MNPEHHNINTGGGQPPGSSESQNQRVQTAQQQQQQANLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQDLGQHASILNGDPNIILGHHGGQPQVTVSAAGAQQIPVSQIIATQSGQPHEALVAHNQQQELAAQQASGTAQVTVSAGQPTHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHLMQQQLMASARPEHSNQQIQLTVSEDGIVTVVEPGGKLVDKEELHEAIKMPTDHQTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAGEQLIVKDEKNAASGKIETAQFAEIKDMKGIDLKGVGALGMEGAVVKISGGSEHDLHAMYKVNVEDLSQLLAYHEVFGKLNTDGQPQAKTVEVEVEAGTSTAMSAEESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPAERHQKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQLCGKKYTRKEHLLNHMRSHTNDTAFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCSKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFSRKEHLNNHVRQHTGDMPYTCTYCTKSFTRKEHLVNHVRQHTGETPFKCSYCTKSFSRKEHLTNHVHLHTGETPHKCAFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHMKQHTGDKPHACKVCSKPFTRKEHLITHMRTHSCGERPFSCGECGKSFPLKGNLLFHERSHNKGSGGNRQYRCDVCSKDFLCKAHLVAHRRTHNEATENTGSVEAPPEIEDCNECTPKCEKTETERPERKHDIRTSTENRPTESNVPQSQNNATVMQITSQQVRTATGTSGSSGGAGVSPGAFPHVPPQHHGAALAHHPVTVNY