Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: -
Assembly: GCA_004193835.1
Location: NW:559310-581566[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 7.8e-05 0.0038 17.4 1.5 1 23 423 445 423 445 0.96

2 20 0.0038 0.19 12.0 0.6 1 20 451 470 451 473 0.94

3 20 1.9e-05 0.00094 19.3 5.6 1 23 492 514 492 514 0.98

4 20 8.8e-05 0.0043 17.2 4.1 1 23 520 542 520 542 0.99

5 20 3.2e-05 0.0016 18.6 5.3 1 23 548 570 548 570 0.97

6 20 2.9e-05 0.0014 18.7 7.8 1 23 576 598 576 598 0.97

7 20 6.4e-07 3.2e-05 23.9 2.9 1 23 604 626 604 626 0.98

8 20 9.2e-05 0.0045 17.1 6.7 1 23 632 654 632 654 0.97

9 20 9.1e-05 0.0045 17.1 6.5 1 23 660 682 660 682 0.97

10 20 4.4e-07 2.2e-05 24.4 1.9 1 23 688 710 688 710 0.98

11 20 4.5e-05 0.0022 18.1 7.9 1 23 716 738 716 738 0.98

12 20 3.3e-06 0.00016 21.7 7.4 1 23 744 766 744 766 0.98

13 20 1.9e-05 0.00096 19.2 6.5 1 23 772 794 772 794 0.98

14 20 1.5e-05 0.00074 19.6 5.5 1 23 800 822 800 822 0.97

15 20 4.5e-05 0.0022 18.1 6.6 1 23 828 850 828 850 0.97

16 20 2.2e-05 0.0011 19.1 6.1 1 23 856 878 856 878 0.98

17 20 5.1e-05 0.0025 17.9 7.8 1 23 884 906 884 906 0.97

18 20 0.0019 0.094 13.0 2.2 1 23 912 933 912 933 0.97

19 20 0.00045 0.022 14.9 0.3 1 23 940 962 940 962 0.97

20 20 0.17 8.4 6.8 4.0 1 23 970 992 970 992 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	7.8e-05	0.0038	17.4	1.5	1	23	423	445	423	445	0.96
2	20	0.0038	0.19	12.0	0.6	1	20	451	470	451	473	0.94
3	20	1.9e-05	0.00094	19.3	5.6	1	23	492	514	492	514	0.98
4	20	8.8e-05	0.0043	17.2	4.1	1	23	520	542	520	542	0.99
5	20	3.2e-05	0.0016	18.6	5.3	1	23	548	570	548	570	0.97
6	20	2.9e-05	0.0014	18.7	7.8	1	23	576	598	576	598	0.97
7	20	6.4e-07	3.2e-05	23.9	2.9	1	23	604	626	604	626	0.98
8	20	9.2e-05	0.0045	17.1	6.7	1	23	632	654	632	654	0.97
9	20	9.1e-05	0.0045	17.1	6.5	1	23	660	682	660	682	0.97
10	20	4.4e-07	2.2e-05	24.4	1.9	1	23	688	710	688	710	0.98
11	20	4.5e-05	0.0022	18.1	7.9	1	23	716	738	716	738	0.98
12	20	3.3e-06	0.00016	21.7	7.4	1	23	744	766	744	766	0.98
13	20	1.9e-05	0.00096	19.2	6.5	1	23	772	794	772	794	0.98
14	20	1.5e-05	0.00074	19.6	5.5	1	23	800	822	800	822	0.97
15	20	4.5e-05	0.0022	18.1	6.6	1	23	828	850	828	850	0.97
16	20	2.2e-05	0.0011	19.1	6.1	1	23	856	878	856	878	0.98
17	20	5.1e-05	0.0025	17.9	7.8	1	23	884	906	884	906	0.97
18	20	0.0019	0.094	13.0	2.2	1	23	912	933	912	933	0.97
19	20	0.00045	0.022	14.9	0.3	1	23	940	962	940	962	0.97
20	20	0.17	8.4	6.8	4.0	1	23	970	992	970	992	0.99

Sequence Information

Coding Sequence: ATGAATCCTGAACACCATAGTATGAATACGGGTGGTGGCCAACCTCCTGGAAGTTCGGAGTCGCAGAGCCAGAGAGTTCAATCTGCGCAGCAACAGCAGCAGGGCAATAATTTGCCCGCGACAACCTCTGCGACGGATTTGCGAGTGAATTCCGCGGCCGTGAACGTCGCTTTGTCTAGCGTCGCCAAATACTGGGTGTTTACAAATTTATTTCCCGGACCTATACCACAAGTTTCCGTGTACGGTTTGCCTACTGGCGCCAGGATTGAAAATGGGAAACCAGTCCAGTTGTTACAGGACCTAGGTCAACATGCTAGCATACTCAATGGTGATCCAAATATCATTTTGGGGCACCATGGAGGCCAACAGCAAGTTACAGTGTCAGCCGCTGGAGCACAACAAATACCTGTATCTCAAATTATTGCAACACAATCAGGACAAACACATGAAGCATTGGTGGCTCACAACCAACAGCAGGAGCTGGCGCAGCAAGCGGCCAACGCTGCTCAGGTCACAGTTAGTGCGGGCCAACCACACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCACGTGGGGCATCATTCACAACAACACTTAATGCAGCAGCAACTAATGGCGGCTGCCCGTCCGGATCACTCAAATCAGcagatacaGCTGACAGTCAGTGAAGATGGAATTGTCACGGTGGTGGAGCCAGGAGGCGGCAAACTGGTCGACAAGGAGGAACTCCATGAAGCCATCAAAATGCCCACAGACCACACCCTCACTGTGCACCAGTTACAACAGATCGTTGGACAGCAGGTGTTAGACAGCGTAGTCCGCATAGAGCAAGCTACAGGAGAGCCAGCGAATATTCTCGTGACTCACAATCCGGACGGGACAACCTCCATAGAAGCAAGCGCCGGCGAACAGCTCATAGTGAAAGACGAGAAAAGCGTCGGCAAAATCGAGACAGCGCAGTATGCTGAAATCAAGGACATAAAAGGATTAGATTTAAAGAGTGTCAACGCAATGGGGATGGAGGGCGCGGTGGTGAAGATATCTGGAGCCAACGAGCATGACCTCCACGCCATGTACAAGGTCAATGTGGAGGACCTCTCACAACTGCTGGCCTATCACGAAGTGTTCGGGAAACTGAACGCGGACGGGCAGCCTCAGGCTAAGGTGATAAGCGAAGTGGAAGTAGAGGCCGGAACAAGCGCTGGAATGTCAGAAGCGGAGTCCTCGCCAGGCCATCATGCTTGCGATATCTGCGGCAAGATATTCCAGTTCCGATATCAGCTGATCGTCCATAGACGATATCACGGGGAGAGTAAACCATTTACATGTCAAGTTTGTGGTTCCGCCTTTGCCAATCCGGTCGAATTATCAAGACATGGGAAGTGTCATCTTGCCGGGGATCCCACTGAGAGACACACAAAAAGGTTGACACAAGACAAGCCTTACGCCTGCACCACTTGCCACAAGACTTTCTCGCGCAAGGAGCATCTGGATAACCACGTGCGCAGCCACACCGGAGAAACGCCATACAGATGCGAATTCTGCGCCAAGACATTCACCCGCAAGGAGCATATGGTGAACCACGTCCGGAAACACACGGGCGAGACGCCGCACCGCTGCGAGATTTGCAAGAAAAGTTTCACCAGAAAAGAACACTTTATGAACCACGTCATGTGGCACACGGGTGCAACTCCACACCATTGTACATTATGCGGTAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCGCACACAAACGATACGGCGTTTCGATGCGACCTGTGCGGCAAGTCGTTCACAAGAAAGGAACATTACACCAATCACATAATGTGGCATACCGGCGAGACCCCACACCGCTGCGACTTCTGTTCGAAGACATTCACCCGCAAGGAACACTTATTGAACCACGTCCGCCAGCATACTGGCGAGTCtcctcaccgctgcaacttctgttcTAAATCGTTCACGCGGCGCGAGCACCTTGTCAACCACGTGCGACAACACACCGGCGAGACGCCCTTCCAGTGCGGATACTGTCCCAAGGCGTTCACCAGGAAGGACCACCTCGtaaaccACGTACGACAACACACGGGCGAATCACCGCACAAGTGTTCGTTCTGCACCAAGTCGTTCACCCGCAAGGAACATCTGACGAACCACGTGCGACAACACACGGGTGAATCCCCGCACCGATGCTCGTATTGCTCCAAATCGTTCACAAGAAAAGAACACTTGACAAACCATATCAGACAGCACACGGGAGAAACGCCACACAAGTGCACGTTCTGCCCGCGCTCGTTCACGCGCAAGGAGCATTTGAACAACCACGTGCGACAACACACCGGGGAACTGCCCTTCAACTGCACCTACTGCACCAAGAGCTTCACGAGGAAGGAGCACCTCGTCAGCCACACCCGACAACACACGGGTGAGACCCCCTTCAAATGCGCCTACTGCACCAAGTCGTTCTCGAGAAAGGAGCATCTCACCAACCACGTGCATCAACACACCGGCGAGACTCCACATAAGTGTGCTTTTTGCACTAAGACATTCTCCAGGAAAGAGCATTTGACCAACCATGTCAGAATCCACACGGGTGAGTCGCCCCACCGCTGCGAGTTTTGTCAAAAGACGTTCACCCGTAAGGAGCACTTGACGAATCATTTGAAACAACACACGGGCGACAAACCGCACCCTTGCAAAATCTGCTCCAAACTGTTCTCTAAGAAGGAGCTCGTCATGCATATGAGATCGCATAGCTGCGGCGACCGACCCTTCAGTTGTGGTGAATGCGGCAAGACGTTCCCGCTAAAAGGCAACCTGATATTCCACGAGCGATCGCACAAGGCCGCCGGCGTGCGCCAGTATCGGTGCGACGTGTGCTCTAAGGACTTCTTATGTAAAGGACATCTGGTGGCGCATAGACGAACGCACACGGACGCGACGGAAGGCGGCAGCGCCGAGGCGTCGGTTGAAGGCGACGAGTGCAGCACCGATTGCACCAAGTGCGAGAAGATGGAGACCGAACGGCCGGAGAGAAAGCATGAAATTAGATTGAGTACAGAAAATAGGCCAGCAGACACAAATGTCACTCAAAGTGAAACTAATGTAGCTGTGATGCAACTAACAAGTCAGCAGCAAGTCCGAGCGGCCTCTGCGGCTAACAACACAACGGTCGCGGGCGCAACCTTTACGCACTCGGCGCCGCAGCACCATACTGGCGCGTCGATAGCGCACCACCCGGTCACGGTCAACTACTAG
Protein Sequence: MNPEHHSMNTGGGQPPGSSESQSQRVQSAQQQQQGNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQLLQDLGQHASILNGDPNIILGHHGGQQQVTVSAAGAQQIPVSQIIATQSGQTHEALVAHNQQQELAQQAANAAQVTVSAGQPHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHLMQQQLMAAARPDHSNQQIQLTVSEDGIVTVVEPGGGKLVDKEELHEAIKMPTDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAGEQLIVKDEKSVGKIETAQYAEIKDIKGLDLKSVNAMGMEGAVVKISGANEHDLHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVISEVEVEAGTSAGMSEAESSPGHHACDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPTERHTKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGATPHHCTLCGKKYTRKEHLVNHMRSHTNDTAFRCDLCGKSFTRKEHYTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSYCSKSFTRKEHLTNHIRQHTGETPHKCTFCPRSFTRKEHLNNHVRQHTGELPFNCTYCTKSFTRKEHLVSHTRQHTGETPFKCAYCTKSFSRKEHLTNHVHQHTGETPHKCAFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLKQHTGDKPHPCKICSKLFSKKELVMHMRSHSCGDRPFSCGECGKTFPLKGNLIFHERSHKAAGVRQYRCDVCSKDFLCKGHLVAHRRTHTDATEGGSAEASVEGDECSTDCTKCEKMETERPERKHEIRLSTENRPADTNVTQSETNVAVMQLTSQQQVRAASAANNTTVAGATFTHSAPQHHTGASIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01071806;
90% Identity: iTF_00075762;
80% Identity: -