Basic Information

Insect: Agriphila straminella
Gene Symbol: -
Assembly: GCA_950108535.1
Location: OX467314.1:5850068-5886905[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.0001 0.0092 17.4 2.2 1 23 418 440 418 440 0.97

2 22 0.0016 0.15 13.6 0.6 1 21 446 466 446 468 0.94

3 22 2.6e-05 0.0024 19.2 5.6 1 23 487 509 487 509 0.98

4 22 0.00012 0.011 17.1 4.1 1 23 515 537 515 537 0.99

5 22 4.4e-05 0.0041 18.5 5.3 1 23 543 565 543 565 0.97

6 22 8.9e-06 0.00082 20.7 8.3 1 23 571 593 571 593 0.97

7 22 6.6e-07 6.1e-05 24.2 3.1 1 23 599 621 599 621 0.98

8 22 0.00013 0.012 17.0 6.7 1 23 627 649 627 649 0.97

9 22 0.00013 0.012 17.0 6.5 1 23 655 677 655 677 0.97

10 22 6.1e-07 5.6e-05 24.3 1.9 1 23 683 705 683 705 0.98

11 22 6.2e-05 0.0057 18.0 7.9 1 23 711 733 711 733 0.98

12 22 2.3e-05 0.0021 19.4 7.8 1 23 739 761 739 761 0.98

13 22 8e-06 0.00074 20.8 4.3 1 23 767 789 767 789 0.98

14 22 3.4e-06 0.00032 22.0 4.6 1 23 795 817 795 817 0.98

15 22 8e-06 0.00073 20.8 3.6 1 23 823 845 823 845 0.97

16 22 0.00024 0.022 16.2 4.7 1 21 851 871 851 873 0.94

17 22 0.00024 0.022 16.2 4.7 1 21 889 909 889 911 0.94

18 22 3.1e-05 0.0028 19.0 6.1 1 23 927 949 927 949 0.98

19 22 0.0006 0.055 14.9 8.7 1 23 955 977 955 977 0.97

20 22 3.1e-06 0.00029 22.1 4.1 1 23 983 1005 983 1005 0.96

21 22 0.00056 0.052 15.0 0.2 1 23 1012 1034 1012 1034 0.97

22 22 0.39 35 6.1 5.0 1 23 1045 1067 1045 1067 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.0001	0.0092	17.4	2.2	1	23	418	440	418	440	0.97
2	22	0.0016	0.15	13.6	0.6	1	21	446	466	446	468	0.94
3	22	2.6e-05	0.0024	19.2	5.6	1	23	487	509	487	509	0.98
4	22	0.00012	0.011	17.1	4.1	1	23	515	537	515	537	0.99
5	22	4.4e-05	0.0041	18.5	5.3	1	23	543	565	543	565	0.97
6	22	8.9e-06	0.00082	20.7	8.3	1	23	571	593	571	593	0.97
7	22	6.6e-07	6.1e-05	24.2	3.1	1	23	599	621	599	621	0.98
8	22	0.00013	0.012	17.0	6.7	1	23	627	649	627	649	0.97
9	22	0.00013	0.012	17.0	6.5	1	23	655	677	655	677	0.97
10	22	6.1e-07	5.6e-05	24.3	1.9	1	23	683	705	683	705	0.98
11	22	6.2e-05	0.0057	18.0	7.9	1	23	711	733	711	733	0.98
12	22	2.3e-05	0.0021	19.4	7.8	1	23	739	761	739	761	0.98
13	22	8e-06	0.00074	20.8	4.3	1	23	767	789	767	789	0.98
14	22	3.4e-06	0.00032	22.0	4.6	1	23	795	817	795	817	0.98
15	22	8e-06	0.00073	20.8	3.6	1	23	823	845	823	845	0.97
16	22	0.00024	0.022	16.2	4.7	1	21	851	871	851	873	0.94
17	22	0.00024	0.022	16.2	4.7	1	21	889	909	889	911	0.94
18	22	3.1e-05	0.0028	19.0	6.1	1	23	927	949	927	949	0.98
19	22	0.0006	0.055	14.9	8.7	1	23	955	977	955	977	0.97
20	22	3.1e-06	0.00029	22.1	4.1	1	23	983	1005	983	1005	0.96
21	22	0.00056	0.052	15.0	0.2	1	23	1012	1034	1012	1034	0.97
22	22	0.39	35	6.1	5.0	1	23	1045	1067	1045	1067	0.98

Sequence Information

Coding Sequence: ATGAATCCAGAACACCACAATATCAATACGGGTGGTGGCCAACCACCTGGAAGTTCTGAGTCTCAGAACCAAAGGGTACAAAGTTCGCAACAACAACAGCAGGGCAATAATTTGCCCGCTACAACCTCTGCGACAGATCTTCGAGTGAATTCCGCGGCGGTGAACGTTGCTTTGTCTAGCGTGGCCAAATATTGGGTGTTTACCAATCTTTTCCCTGGACCTATACCACAAGTATCTGTTTATGGTCTTCCTACGGGTGCTAGAATCGAAAATGGAAAGCCTGTTCAGGACCTCGGCCAACACGCTAGCATACTCAATGGCGACCCCAACATCATATTGGGGCACCATGGAGGCCAATCGCAGGTCACAGTGTCCGCTCCTGGTGGGCAGCAAATACCAGTTTCACAAATCATCGCTACTCAATCTGGACAAACACAtgaAGCATTGGTGGCACACTCTCAACAGCAGGAGCTTGCTGTACAGCAAGCGTCGGGCACCACTCAGGTCACAGTGAGCCCGGGCCAGCATCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCATGTGGGGCATCATTCACATCAACACTTAATGCAGCAGCAACTTATGGCCACTGCCCGCCCAGAACACTCAAATCAACAGATCCAATTGACTGTGAGTGAAGACGGCATCGTGACGGTGGTGGAACCGGGAGGCAAGCTGGTTGACAAGGAGGAGTTGCATGAGGCGATAAAGATGCCTTCAGACCACACGCTTACTGTCCATCAGTTGCAGCAGATTGTAGGACAACAGGTCATAGACAGCGTCGTCCGTATAGAGCAGGCTACAGGCGAGCCCGCCAATATCTTGGTGACGCACAACCCTGACGGCACCACTTCCATAGAAGCCAGCGCTGGAGATCAACTCATAGTCAAGGACGAGAAGAACGTTGGAAAACTTGAGGCCACGCAGTATGCTGAGATTAAAGACATAAAGGGCATAGACTTGAAGAGTGTAGGAGCCATGGGAATGGAAGGTGCAGTGGTCAAAATCTCAGGTGCCTCGGAGCACGACCTTCATGCCATGTATAAAGTAAATGTAGAAGATTTGTCACAGCTGCTAGCTTACCATGAAGTGTTTGGAAAACTTAATGCTGAAGGACAACAGCAAGcaaagACAGTGGAAGTAGAAGTGGAAGCAGGAACAAGCACAGCAATGTCTGAAGCAGAATCATCACCTGGCCATCATTCTTGTGATATCTGTGGAAAAATATTTCAGTTCCGTTATCAACTTATTGTACACAGACGATACCACGGCGAGAGCAAGCCATTCACATGTCAAGTTTGTGGTTCAGCTTTTGCCAACCCTGTTGAACTAACAAAACACGGAAGATGTCATCTCGCTGGCGATCCAGCGGAAAGGAACAACAAACGCATGACCCAAGACAAGCCGTACGCCTGCACCACTTGCCACAAGACCTTCTCACGGAAGGAACATCTCGACAACCACGTGCGCAGTCATACCGGAGAAACTCCGTATAGATGCGAGTTCTGCGCGAAGACGTTCACCCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACCAGGAAGGAGCACTTCATGAACCACGTCATGTGGCATACCGGTGAAACTCCGCACCATTGTCAAATATGTGGCAAGAAGTATACTAGGAAGGAGCATTTAACGAACCATATGAGGTCGCACACTAATGATACCCCGTTCCGATGCGATCTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATTATGTGGCATACGGGCGAAACGCCCCACCGATGCGACTTCTGTTCAAAGACATTCACCCGAAAGGAGCATTTGTTGAACCACGTCCGCCAGCATACGGGCGAATCGCCCCATCGGTGCAACTTCTGCTCCAAGTCTTTCACTAGGAGGGAACACCTCGTGAATCACGTCCGCCAACACACGGGAGAAACGCCTTTCCAGTGCGGATATTGCCCGAAGGCGTTTACTAGAAAGGACCATCTCGTGAACCACGTTCGTCAGCACACGGGCGAGTCCCCGCACAAGTGCTCGTTCTGCACGAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACGGGCGAGTCGCCGCACCGCTGCACATTCTGCTCCAAGTCCTTCACCAGGAAGGAACACCTGACCAACCATATCagACAACATACGGGAGAAACGCCGCACAAATGCACGTACTGCCCGCGGGCGTTCGCGCGCAAGGAGCACCTCACTAACCACGTGCGCCAACACACCGGGGATATGCCCTTCTCCTGCACTTACTGCACCAAGTCTTTCAACCGGAAGGAGCATCTTGTTAATCATATCAGGCAACATACGGGCGAGACCCCGTTCAAGTGCACGTACTGCGCGAAGTCTTTCTCCCGCAAGGAGCACCTCACGAACCACGTGCTCCTGCACACGGGCGAGACGCCGCACAAGTGCGCCTTCTGCACCAAGACCTTCTCCAGGAAGGAACACTTGACTAACCACGTCAGGCCCCATATAGGGTTGCCAGGTCCAAAAACAAAGCACACGGGTGAGACGCCACATAAGTGCGCCTTCTGCACCAAGACATTCTCCAGGAAGGAACACTTGACTAACCACGTCAGGCCCCATATAGGGTTGCCAGGTCCAAAAACAAAGCACACGGGTGAGACGCCACATAAGTGCGCCTTCTGCACCAAGACATTCTCCAGGAAGGAACACTTGACCAACCACGTCAGAATACACACGGGTGAATCTCCGCATCGCTGCGAGTTCTGTCAAAAGACGTTCACGCGCAAGGAGCACCTCACGAACCACTTCAAACAACACACCGGCGATACGCCGCACGCGTGCAAGATCTGCTCCAAACCGTTCACTAGGAAAGAACATCTGGTGACGCATATGAGATCACACAGTTGCGGGCAGAGACCATTCAGTTGCGGAGAGTGCGGCAAATCGTTCCCGCTGAAGGGCAACCTGATATTCCACGAGCGATCGCACAACAAAGCCAGCGGCGGCGCCACGAGGCAGTATCGATGCGATATCTGCTCCAAGGACTTCCTATGTAAAGGTCATTTAGTGTCTCACCGGAGAACGCACACGGAAGCCGCGGATGCCGCGCCCAGCGGCGACGCCCCGCCAGAGACCGAGGACTGCGGGGACTGCAATAAGTGCGACAAAATCGACACCGAGCTGCCGGAGAGGAAGCATGATATCAGAGTGACTACGGAAAGTAGGCCGGCAGATAATAATGTCGCGCAAAATCAACAAAGCAACCCAACTGTGATGCAAATAACGAGTCAGGAGGTGcgcgtggcggcggcggcgacgaGTGCGCCGAGCGTCCCCACGTTCACGGTGAGCACGCAGCACCACGCCGGCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence: MNPEHHNINTGGGQPPGSSESQNQRVQSSQQQQQGNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQDLGQHASILNGDPNIILGHHGGQSQVTVSAPGGQQIPVSQIIATQSGQTHEALVAHSQQQELAVQQASGTTQVTVSPGQHQQVPNNRVEFVQHHNIDMVNHVGHHSHQHLMQQQLMATARPEHSNQQIQLTVSEDGIVTVVEPGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAGDQLIVKDEKNVGKLEATQYAEIKDIKGIDLKSVGAMGMEGAVVKISGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQQQAKTVEVEVEAGTSTAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELTKHGRCHLAGDPAERNNKRMTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLTNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCSKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFARKEHLTNHVRQHTGDMPFSCTYCTKSFNRKEHLVNHIRQHTGETPFKCTYCAKSFSRKEHLTNHVLLHTGETPHKCAFCTKTFSRKEHLTNHVRPHIGLPGPKTKHTGETPHKCAFCTKTFSRKEHLTNHVRPHIGLPGPKTKHTGETPHKCAFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHFKQHTGDTPHACKICSKPFTRKEHLVTHMRSHSCGQRPFSCGECGKSFPLKGNLIFHERSHNKASGGATRQYRCDICSKDFLCKGHLVSHRRTHTEAADAAPSGDAPPETEDCGDCNKCDKIDTELPERKHDIRVTTESRPADNNVAQNQQSNPTVMQITSQEVRVAAAATSAPSVPTFTVSTQHHAGAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01071806;
90% Identity: iTF_00284745;
80% Identity: -