Basic Information

Insect: Crambus lathoniellus
Gene Symbol: -
Assembly: GCA_949710035.1
Location: OX453302.1:10243308-10280291[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 8e-05 0.014 17.6 2.2 1 23 371 393 371 393 0.97

2 20 0.0013 0.22 13.8 0.6 1 21 399 419 399 421 0.94

3 20 2.1e-05 0.0036 19.4 5.6 1 23 440 462 440 462 0.98

4 20 9.8e-05 0.016 17.4 4.1 1 23 468 490 468 490 0.99

5 20 3.5e-05 0.006 18.7 5.3 1 23 496 518 496 518 0.97

6 20 5.3e-06 0.00089 21.3 8.4 1 23 524 546 524 546 0.97

7 20 5.1e-07 8.6e-05 24.5 3.0 1 23 552 574 552 574 0.98

8 20 0.0001 0.017 17.3 6.7 1 23 580 602 580 602 0.97

9 20 0.0001 0.017 17.3 6.5 1 23 608 630 608 630 0.97

10 20 4.9e-07 8.2e-05 24.6 1.9 1 23 636 658 636 658 0.98

11 20 5e-05 0.0084 18.3 7.9 1 23 664 686 664 686 0.98

12 20 8.3e-06 0.0014 20.7 6.4 1 23 692 714 692 714 0.98

13 20 6.4e-06 0.0011 21.1 4.3 1 23 720 742 720 742 0.98

14 20 1.4e-05 0.0024 20.0 4.7 1 23 748 770 748 770 0.98

15 20 2.2e-05 0.0037 19.4 7.1 1 23 776 798 776 798 0.97

16 20 2.5e-05 0.0042 19.2 6.1 1 23 804 826 804 826 0.98

17 20 0.00048 0.081 15.2 8.7 1 23 832 854 832 854 0.97

18 20 4.4e-05 0.0074 18.4 7.4 1 23 860 882 860 882 0.96

19 20 0.00073 0.12 14.6 0.3 1 23 889 911 889 911 0.96

20 20 0.19 32 7.0 4.0 1 23 922 944 922 944 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	8e-05	0.014	17.6	2.2	1	23	371	393	371	393	0.97
2	20	0.0013	0.22	13.8	0.6	1	21	399	419	399	421	0.94
3	20	2.1e-05	0.0036	19.4	5.6	1	23	440	462	440	462	0.98
4	20	9.8e-05	0.016	17.4	4.1	1	23	468	490	468	490	0.99
5	20	3.5e-05	0.006	18.7	5.3	1	23	496	518	496	518	0.97
6	20	5.3e-06	0.00089	21.3	8.4	1	23	524	546	524	546	0.97
7	20	5.1e-07	8.6e-05	24.5	3.0	1	23	552	574	552	574	0.98
8	20	0.0001	0.017	17.3	6.7	1	23	580	602	580	602	0.97
9	20	0.0001	0.017	17.3	6.5	1	23	608	630	608	630	0.97
10	20	4.9e-07	8.2e-05	24.6	1.9	1	23	636	658	636	658	0.98
11	20	5e-05	0.0084	18.3	7.9	1	23	664	686	664	686	0.98
12	20	8.3e-06	0.0014	20.7	6.4	1	23	692	714	692	714	0.98
13	20	6.4e-06	0.0011	21.1	4.3	1	23	720	742	720	742	0.98
14	20	1.4e-05	0.0024	20.0	4.7	1	23	748	770	748	770	0.98
15	20	2.2e-05	0.0037	19.4	7.1	1	23	776	798	776	798	0.97
16	20	2.5e-05	0.0042	19.2	6.1	1	23	804	826	804	826	0.98
17	20	0.00048	0.081	15.2	8.7	1	23	832	854	832	854	0.97
18	20	4.4e-05	0.0074	18.4	7.4	1	23	860	882	860	882	0.96
19	20	0.00073	0.12	14.6	0.3	1	23	889	911	889	911	0.96
20	20	0.19	32	7.0	4.0	1	23	922	944	922	944	0.99

Sequence Information

Coding Sequence: ATGAATCCAGAACACCACAATATCAATACGGGTGGTGGCCAACCTCCTGGAAGTTCTGAGTCTCAGAATCAAAGAGTGCAAAGTGCGCAACAACAACAGCAGGGCAATAATTTGCCCGCTACAACCTCTGCGACCGATCTTCGGGTCAATTCGGCAGCGGTGAACGTTGCTTTGTCTAGCGTTGCCAAATATTGGGTGTTTACCAATCTCTTCCCGGGACCTATACCACAGGTGTCTGTATATGGTCTCCCTACGGGCGCTAGAATTGAAAATGGAAAGCCTGTCCAGGATTTAGGTCAACATGCTAGCATACTCAATGGTGACCCCAACATCATATTGGGGCACCATGGTGGGCAACCACAAGTCACTGTTTCAGCGGCCGGTGGGCAGCAAATACCGGTTTCACAAATCATTGCTACTCAATCTGGACAAACACATGAAGCGTTGGTGGCTCACACTCAGCAGGAGCTTGTACAGCAAGCATCGGGCACCACTCAGGTCACAGTTAGCCCTGGCCAGCATCAGCAGATCCAGTTGACAGTGAGTGAAGATGGAATCGTGACGGTAGTGGAGCCGGGCGGCAAGTTGGTCGATAAGGAGGAGCTGCACGAAGCTATAAAAATGCCTTCGGACCACACGCTCACTGTTCATCAGTTGCAGCAGATCGTAGGACAGCAGGTCATAGACAGCGTTGTGCGCATAGAGCAGGCTACAGGTGAACCCGCCAATATCTTGGTGACACACAACCCCGACGGCACCACTTCCATAGAAGCCAGCGCTGGGGATCAACTCATAGTCAAGGACGAGAAGAGCGCCGGCAAACTAGAAGCAACTCAGTATGCtgaaattaaagatataaaggGGATAGATTTAAAgAGTGTAGGTGCAATGGGTATGGAAGGAGCTGTAGTCAAAATCTCAGGTGCATCGGAACACGATCTTCATGCCATGTATAAAGTTAATGTAGAAGATTTATCACAGCTGCTAGCTTACCATGAAGTGTTTGGAAAACTTAATGCTGAAGGACAACAGCAAACGAAGGCTGTAGAAGTAGAAGCGGAGGCAGGAACAAGCACAGCGATGTCTGAAGCAGAAACGTCTCCTGGCCATCATTCTTGTGATATTTGTGGAAAGATATTCCAGTTTCGTTATCAACTTATTGTACATAGACGATATCACGGCGAAAGCAAACCGTTCACCTGTCAAGTTTGTGGTTCCGCTTTTGCTAATCCTGTTGAATTAACGAAACACGGAAGATGTCATCTCGCTGGTGATCCAGCAGAAAGGAACAACAAGCGAATGACCCAAGACAAGCCATATGCGTGCACTACATGCCACAAGACCTTCTCTCGGAAGGAACATCTCGACAACCATGTGCGCAGTCATACTGGAGAAACTCCGTATAGATGCGAATTCTGCGCGAAGACGTTCACCCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCATCGCTGCGAGATCTGCAAGAAGAGCTTCACCAGGAAGGAGCACTTCATGAACCACGTGATGTGGCATACCGGTGAAACTCCGCATCATTGTACAATATGTGGCAAGAAGTATACTAGGAAGGAGCATTTAACGAATCATATGCGGTCGCATACTAATGATACCCCGTTCAGATGCGAACTCTGCGGCAAGTCGTTCACGAGAAAGGAACATTTCACCAATCACATTATGTGGCATACGGGCGAAACGCCGCATCGATGTGATTTCTGTTCAAAGACATTCACGCGCAAAGAACATTTGTTAAACCACGTACGCCAACACACAGGAGAGTCGCCCCACCGCTGCAATTTCTGCTCCAAATCGTTCACGAGGAGAGAACATCTCGTGAACCATGTTCGTCAACACACGGGGGAGACGCCTTTCCAGTGCGGATACTGTCCGAAGGCGTTTACGAGGAAGGACCATCTCGTGAACCACGTCCGACAGCACACAGGCGAATCGCCCCACAAGTGTTCGTTCTGCACGAAGTCGTTCACGCGTAAAGAACACTTGACGAACCACGTGCGGCAACACACGGGCGAATCGCCGCACCGATGTTCGTACTGCGCCAAGTCATTCACTAGGAAGGAGCATCTTACTAACCATATCAGACAACATACGGGCGAAACACCGCACAAATGCACGTACTGCCCGCGGGCGTTCGCGCGCAAGGAACACCTCACGAACCACGTGCGGCAACACACCGGCGACATGCCCTTCTCCTGCACGTTCTGCACCAAGTCCTTCAACCGGAAGGAGCATCTTGTCAATCATATCAGGCAACACACGGGCGAGACTCCATTCAAATGCACGTACTGTTCGAAGTCTTTCTCCCGTAAGGAGCACCTGACGAATCACGTGCATTTGCACACGGGCGAGACGCCGCACAAGTGCGCCTTCTGTACCAAGACCTTCTCCAGGAAGGAGCACTTGACCAATCACGTCAGAATACACACGGGTGAATCTCCGCATCGCTGCGAGTTCTGTCAAAAGACGTTCACCCGCAAGGAACACTTGACGAACCACTTCAAGCAGCACACGGGAGACACGCCGCACGCCTGCAAAGTGTGCTCCAAACATTTCACTAGGAAAGAACATCTCGTCACGCACATGAGATCACATAGCTGTGGTCAGAGGCCGTTCAGTTGCGGCGAGTGTGGCAAGTCGTTCCCGCTAAAAGGCAATTTACTGTTCCACGAAAGGTCGCACAGTAAAACCAGCGGCGGCACCACGAGGCAGTACCGATGCGATGTCTGCTCCAAGGACTTCTTATGTAAAGGTCATTTAGTAGCTCACCGAAGAACGCATCTCACAGAAACGTCCGACGCCGCCGCGCCTACGGGTGAGGCACCGGCAGAAAGCGAGGACTGTGGAGACTGCAACAAATGCGACAAAATCGACACGGAACGGCCGGAGAGAAAGCATGATATCAGGTAA
Protein Sequence: MNPEHHNINTGGGQPPGSSESQNQRVQSAQQQQQGNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQDLGQHASILNGDPNIILGHHGGQPQVTVSAAGGQQIPVSQIIATQSGQTHEALVAHTQQELVQQASGTTQVTVSPGQHQQIQLTVSEDGIVTVVEPGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAGDQLIVKDEKSAGKLEATQYAEIKDIKGIDLKSVGAMGMEGAVVKISGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQQQTKAVEVEAEAGTSTAMSEAETSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELTKHGRCHLAGDPAERNNKRMTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLTNHMRSHTNDTPFRCELCGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFARKEHLTNHVRQHTGDMPFSCTFCTKSFNRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCAFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHFKQHTGDTPHACKVCSKHFTRKEHLVTHMRSHSCGQRPFSCGECGKSFPLKGNLLFHERSHSKTSGGTTRQYRCDVCSKDFLCKGHLVAHRRTHLTETSDAAAPTGEAPAESEDCGDCNKCDKIDTERPERKHDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01071806;
90% Identity: iTF_00284745;
80% Identity: -