Ufer013501.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Udea ferrugalis
Gene Symbol
-
Assembly
GCA_950022985.1
Location
OX465526.1:12376472-12399155[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 9.3e-05 0.0088 17.3 1.5 1 23 424 446 424 446 0.96
2 21 0.0045 0.43 12.0 0.6 1 20 452 471 452 474 0.94
3 21 2.3e-05 0.0022 19.2 5.6 1 23 493 515 493 515 0.98
4 21 0.00011 0.01 17.1 4.1 1 23 521 543 521 543 0.99
5 21 3.8e-05 0.0036 18.5 5.3 1 23 549 571 549 571 0.97
6 21 4.3e-05 0.004 18.4 8.3 1 23 577 599 577 599 0.97
7 21 1.2e-05 0.0012 20.0 4.0 1 23 605 627 605 627 0.96
8 21 0.00011 0.01 17.1 6.7 1 23 633 655 633 655 0.97
9 21 0.00011 0.01 17.1 6.5 1 23 661 683 661 683 0.97
10 21 0.00022 0.021 16.1 0.4 1 18 689 706 689 706 0.94
11 21 5.3e-07 5e-05 24.4 1.9 1 23 714 736 714 736 0.98
12 21 5.4e-05 0.0051 18.1 7.9 1 23 742 764 742 764 0.98
13 21 9e-06 0.00085 20.5 6.4 1 23 770 792 770 792 0.98
14 21 2.6e-05 0.0025 19.0 5.2 1 23 798 820 798 820 0.98
15 21 5.4e-06 0.00051 21.2 4.4 1 23 826 848 826 848 0.98
16 21 2.7e-05 0.0025 19.0 7.1 1 23 854 876 854 876 0.97
17 21 2.7e-05 0.0025 19.0 6.1 1 23 882 904 882 904 0.98
18 21 1.8e-05 0.0017 19.5 8.0 1 23 910 932 910 932 0.97
19 21 1e-06 9.9e-05 23.4 4.2 1 23 938 960 938 960 0.96
20 21 0.00079 0.075 14.4 0.3 1 23 967 989 967 989 0.96
21 21 0.56 53 5.4 5.0 1 23 998 1020 998 1020 0.98

Sequence Information

Coding Sequence
ATGAATCCTGAACACCACAATATGAACACGGGTGGTGGCCAGCCTCCTGGAAGTTCGGAGTCTCAAAACCAGAGGGTGCAAAGTGCGCAGCAACAGCAGCAGGCCAATAATTTGCCTGCCACAACGTCTGCTACTGACCTCAGGGTGAATTCTGCCGCCGTAAACGTCGCTTTGTCTAGCGTCGCCAAATACTGGGTGTTTACAAATCTATTTCCCGGCCCTATACCTCAAGTATCTGTGTACGGGTTGCCTACTGGTGCTAGAATTGAAAATGGGAAACCGGTTCAGGACATTGGACAACATGCAAGTATACTCAATGGAGACCCTAATATCATTTTGGGACACCATGGAGGACAACAACAGGTCACAGTGTCCGCTGCTGGAGGTCAACAAATCCCTGTATCTCAAATCATTGCCACACAATCTGGACAAACTCATGAAGCACTGGTGGCCCACAGCCAACAACAGGAGCTTGCTGTGCAGCAAGCATCCAACGCTGCCCAAGTCACAGTTAGTGCAGGCCAACCCACGCACCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCACGTGGGGCATCATTCACAACAACACTTAATGCAGCAGCAACTTATGGCCAGTACCCGCCCGGAACACTCAAATCAGcagATTCAGCTGACTGTCAGCGAAGATGGCATTGTTACGGTGGTCGAGCCGGGAGGCGGCAAACTCGTGGACAAAGAGGAACTTCATGAAGCCATCAAAATGCCCACAGACCATCAGACCCTTACTGTGCACCAGCTACAACAAATTGTTGGTCAACAGGTAATAGACAGCGTCGTCCGCATAGAGCAAGCCACAGGAGAACCGGCGAATATACTCGTCACCCACAACCCTGATGGGACCACTTCGATAGAAGCTAGCGCCGGTGATCAGCTGATCGTCAAAGATGAAAAGAACTCtggcaacaaaatagagaccaCGCAGTTTGCtgaaataaaagatataaaagGAATAGACCTGAAGAGTGTCGGAGCAATGGGGATGGAGGGCGCTGTAGTGAAGATATCTGGCGCTTCGGAGCACGACCTTCACGCAATGTACAAAGTCAACGTGGAAGACTTGTCGCAACTACTTGCCTACCACGAAGTCTTTGGGAAACTGAATGCTGAGGGACAGCCACAGGCTAAGGTGATAGGAGAAGTGGAAGTGGAGCCTGGCACCAGCACCGCTATGTCGGCAGAGGAGTCTTCGCCGGGCCACCACGCCTGCGACATCTGCGGGAAAATATTCCAGTTTCGATATCAGCTTATTGTGCATAGaCGATATCACGGGGAGACTAAACCATTTACATGTCAAGTTTGTGGTTCCGCATTTGCAAATCCGGTTGAATTATCAAGACATGGGAAATGTCATCTTGCTGGGGACCCTGCAGAGAGGCATCAGAAGAGGCTGATGCAAGACAAGCCCTACGCCTGCACCACTTGCCATAAAACCTTCTCGAGGAAGGAGCATCTCGACAACCACGTACGCAGTCATACAGGGGAAACGCCATACAGATGCGAGTTCTGCGCGAAGACGTTCACGCGCAAGGAGCACATGGTCAATCACGTGCGCAAGCACACTGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACTCGCAAGGAGCACTTTATGAACCATGTCATGTGGCATACAGGTGAAACACCACACCATTGCCAAATGTGCGGTAAGAAGTATACTAGGAAGGAGCATTTACTGAACCATATGAGATCGCATACGAACGATACGGCCTTCCGGTGTGAACTGTGCGGCAAGTCGTTCACCAGAAAGGAACACTTCAACAATCACTTTCTCTGGCATACTGGCGAGACCCCCCACCGCTGCGACTTCTGCTCCAAGACCTTCACGCGCAAGGAGCACCTCCTAAACCACGTCCGTCAGCACACGGGCGAGTCCCCGCACCGCTGCAACTTCTGCAGCAAGTCCTTCACGCGGCGCGAACACCTCGTCAACCACGTGCGCCAGCACACCGGCGAGACGCCCTTCCAGTGCGGATACTGCCCCAAGGCCTTCACGAGGAAGGACCATCTGGTCAGATTTCACACCGGCGAGACGCCCTTCCAGTGCGGATACTGCCCCAAGGCCTTCACGAGGAAGGACCATCTGGTGAACCACGTCAGGCAGCACACAGGCGAATCTCCTCACAAATGTTCGTTCTGTACGAAATCGTTCACTCGCAAGGAACACTTGACCAATCACGTTCGCCAACACACCGGCGAGTCACCTCACCGCTGCAGTTATTGCGCGAAATCATTCACTAGGAAAGAACATCTCACCAACCATATAAGACAGCACACGGGCGAGACGCCACACAAGTGCTCGTTCTGCCCGCGCGCCTTCTCGCGCAAGGAGCACCTGAACAACCACGTGCGCCAGCACACCGGCGACATGCCCTACAACTGCTCCTACTGCACCAAGAGCTTCACGCGCAAGGAACATCTCGTTAACCATGTGCGACAACACACAGGCGAGACGCCGTTCAAGTGCTCGTACTGCACCAAATCGTTCTCGAGGAAGGAGCATCTGACCAACCACGTCCATCTCCACACCGGCGAGACGCCGCACAAGTGCGCGTTTTGCACTAAGACCTTCTCCAGGAAAGAGCATTTGACCAATCACGTCAGAATTCATACCGGTGAGTCACCACACCGTTGCGAGTTCTGCCAAAAGACGTTTACCCGCAAGGAGCACCTCACGAATCATATGAAGCAGCATACGGGGGACAAGCCGCACGCCTGCAAGATCTGCAACAAGCCCTTCACCAGGAAAGAGCATCTTGTAACGCACATGAGATCACACAGCTGCGGCGAGCGACCGTTCAGCTGCGGcgaatgcggcaagtcgttccCGCTCAAAGGCAACCTGCTGTTCCACGAGCGCTCGCACAACAAGACCGGcgcggcgaggccgtaccggtGTGAAGTCTGCTCTAAGGACTTCCTTTGTAAAGGACATCTAGTATCTCATCGGCGGACGCACACGGAAGCGGCAGAGAACGCCGGCAGCGCCGAGGTCGCGCCGGAGGCTGAGGACTGCACTGACTGCGACAAGATGGAGGCGGAGCGGCCGGAGAGGAAACACGAAATTAGAACTTCAACTGAAAATAGGACAACTGAAAGCAATATAACGCAAAATCAACAAACAAATGCGGCTGTGATGCAAATAACGAGTCAGCAGGTGCGAGCCGCGACGGTAGCAGCGGCCCCGAGCGCCGGCGTGGGCGTGGGCTCGGTCCCAGGCGTGGGCGCGGTGACGGCCACGTTCACGCACGCGTCGCACGCGCACGCCACGCCCGCCATCGCGCACCATCCTGTCACTGTCAACTACTAG
Protein Sequence
MNPEHHNMNTGGGQPPGSSESQNQRVQSAQQQQQANNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQDIGQHASILNGDPNIILGHHGGQQQVTVSAAGGQQIPVSQIIATQSGQTHEALVAHSQQQELAVQQASNAAQVTVSAGQPTHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHLMQQQLMASTRPEHSNQQIQLTVSEDGIVTVVEPGGGKLVDKEELHEAIKMPTDHQTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAGDQLIVKDEKNSGNKIETTQFAEIKDIKGIDLKSVGAMGMEGAVVKISGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQPQAKVIGEVEVEPGTSTAMSAEESSPGHHACDICGKIFQFRYQLIVHRRYHGETKPFTCQVCGSAFANPVELSRHGKCHLAGDPAERHQKRLMQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQMCGKKYTRKEHLLNHMRSHTNDTAFRCELCGKSFTRKEHFNNHFLWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVRFHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSYCAKSFTRKEHLTNHIRQHTGETPHKCSFCPRAFSRKEHLNNHVRQHTGDMPYNCSYCTKSFTRKEHLVNHVRQHTGETPFKCSYCTKSFSRKEHLTNHVHLHTGETPHKCAFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHTGDKPHACKICNKPFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKTGAARPYRCEVCSKDFLCKGHLVSHRRTHTEAAENAGSAEVAPEAEDCTDCDKMEAERPERKHEIRTSTENRTTESNITQNQQTNAAVMQITSQQVRAATVAAAPSAGVGVGSVPGVGAVTATFTHASHAHATPAIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01071806;
90% Identity
-
80% Identity
-