Basic Information

Insect: Nymphula nitidulata
Gene Symbol: -
Assembly: GCA_947347705.1
Location: OX374628.1:12726946-12758490[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00025 0.028 15.8 4.2 1 23 419 441 419 441 0.97

2 18 0.0036 0.39 12.1 0.6 1 20 447 466 447 469 0.94

3 18 1.8e-05 0.002 19.4 5.6 1 23 488 510 488 510 0.98

4 18 1.7e-05 0.0018 19.5 3.9 1 23 516 538 516 538 0.99

5 18 3e-05 0.0033 18.6 5.3 1 23 544 566 544 566 0.97

6 18 8.7e-05 0.0096 17.2 6.7 1 23 572 594 572 594 0.97

7 18 8.7e-05 0.0095 17.2 6.5 1 23 600 622 600 622 0.97

8 18 4.2e-07 4.6e-05 24.5 1.9 1 23 628 650 628 650 0.98

9 18 4.3e-05 0.0047 18.2 7.9 1 23 656 678 656 678 0.98

10 18 3.7e-05 0.0041 18.4 6.6 1 23 684 706 684 706 0.98

11 18 5.7e-06 0.00062 20.9 6.5 1 23 712 734 712 734 0.98

12 18 7.5e-05 0.0083 17.4 5.6 1 23 740 762 740 762 0.96

13 18 1.9e-05 0.0021 19.3 7.1 1 23 768 790 768 790 0.97

14 18 6.6e-06 0.00072 20.7 6.1 1 23 796 818 796 818 0.98

15 18 9.4e-06 0.001 20.3 7.6 1 23 824 846 824 846 0.97

16 18 4e-06 0.00044 21.4 5.0 1 23 852 874 852 874 0.97

17 18 0.00063 0.069 14.5 0.3 1 23 881 903 881 903 0.96

18 18 0.17 19 6.9 4.2 1 23 915 937 915 937 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00025	0.028	15.8	4.2	1	23	419	441	419	441	0.97
2	18	0.0036	0.39	12.1	0.6	1	20	447	466	447	469	0.94
3	18	1.8e-05	0.002	19.4	5.6	1	23	488	510	488	510	0.98
4	18	1.7e-05	0.0018	19.5	3.9	1	23	516	538	516	538	0.99
5	18	3e-05	0.0033	18.6	5.3	1	23	544	566	544	566	0.97
6	18	8.7e-05	0.0096	17.2	6.7	1	23	572	594	572	594	0.97
7	18	8.7e-05	0.0095	17.2	6.5	1	23	600	622	600	622	0.97
8	18	4.2e-07	4.6e-05	24.5	1.9	1	23	628	650	628	650	0.98
9	18	4.3e-05	0.0047	18.2	7.9	1	23	656	678	656	678	0.98
10	18	3.7e-05	0.0041	18.4	6.6	1	23	684	706	684	706	0.98
11	18	5.7e-06	0.00062	20.9	6.5	1	23	712	734	712	734	0.98
12	18	7.5e-05	0.0083	17.4	5.6	1	23	740	762	740	762	0.96
13	18	1.9e-05	0.0021	19.3	7.1	1	23	768	790	768	790	0.97
14	18	6.6e-06	0.00072	20.7	6.1	1	23	796	818	796	818	0.98
15	18	9.4e-06	0.001	20.3	7.6	1	23	824	846	824	846	0.97
16	18	4e-06	0.00044	21.4	5.0	1	23	852	874	852	874	0.97
17	18	0.00063	0.069	14.5	0.3	1	23	881	903	881	903	0.96
18	18	0.17	19	6.9	4.2	1	23	915	937	915	937	0.98

Sequence Information

Coding Sequence: ATGAATCCAGAACACCATAGTATCAATACGGGTGGTGGCCAGCCTCCTGGAAGTTCGGAGTCCCAGAGTCAAAGAGTTCAAAGTGCACAGCAACAGCAGCAGGCTAGTAATTTGCCCGCCACAACCTCTGCGACTGACCTGAGAGTCAACTCCGCGGCAGTCAACGTAGCTTTGTCTAGCGTCGCTAAATATTGGGTGTTTACCAATTTATTTCCCGGTCCCATACCGCAAGTTTCTGTTTATGGACTACCCACTGGGACTAGAATTGAAAATGGGAAACCTGTCCAGGATCTTGGTCAAACACATGCAAGTATACTTAATGGGGATCCTAACATCATATTGGGGCACCACACTGGGCAGCCACAAGTCACAGTTTCAGCTGGAGGAGGTCAGCAGATACCTGTATCACAAATCATTGCTACACAGTCTGGACAGACGCATGAAGCAATGGTGGCTCATAGTCAGCAAGAGCTGGCAGCACAGCAAGCATCGAGCAACACTCAGGTCACTGTTAGCCCAGGGCAGCCCACTCATCAGCAGGTACCCAATAATCGGGTCGAATTTGTACAACACCATAACATTGATATGGTAAATCATGTGGGACATCATTCACAACAGCACTTGATGCAACAGCAACTTATGGCCAGCACCCGACAAGAACACTCAAATCAACAGATCCAGCTCACAGTGAGTGAAGACGGTATTGTGACTGTGGTAGAACCAGGTGGCAAGTTGGTGGACAAGGAAGAACTTCACGAAGCCATCAAAATGCCTTCAGACCACACCCTCACCGTCCATCAACTGCAGCAGATTGTCGGGCAACAGGTACTAGACAGCGTAGTTCGCATAGAGCAAGCTACTGGAGAACCAGCCAATATACTAGTGACACATAACCCTGATGGCACTACTTCAATAGAGGCCAGCGCTGGGGATCAACTCATAGTCAAAGATGAAAAGAATGTGTCTAAAATTGAAACAGCTCAGTTTGCAGAGATTAAAGATATAAAGGGCATCGACTTAAAGAGTGCAATGGGAATGGAAGGAGCAGTAGTTAAAATCTCAGGAGCTTCAGAACACGACTTGCATGCCATGTACAAAGTCAATGTGGAGGATTTGTCCCAGTTGCTGGCTTACCATGAAGTGTTTGGAAAACTTAATGCCGAGGGTCAACAGCAACAAACTAAGGTAATAACTGAAGTGGATGTAGAAGCAGGCACAAGTGCCATGGCTGAAGTGGAATCATCCTCAGAACACCACTCTTGCGATATATGTGGAAAAATATTCCATTTCCGCTATCAACTAATTGTCCACAGACGATATCATGGGGAAAGCAAACCTTTCACTTGTCAAGTATGTGGTTCTGCTTTCGCTAATCCTGTTGAATTATCGAGACATGGAAAATGTCATCTTGCTGGAGATCCAGTAGAAAGACACGCGAAAAGATTGACGCAAGACAAGCCGTATGCCTGCACTACTTGCCACAAGACATTCTCCCGTAAAGAGCACCTTGACAACCATGTCCGCAGTCACACTGGCGAGACTCCATATAGGTGTGAATACTGCGCTAAGACATTCACCCGCAAGGAGCACATGGTGAATCATGTCCGCAAGCACACGGGCGAAACGCCGCACCGCTGCGAGATCTGCAAAAAGAGCTTTACCAGGAAAGAGCACTTCATGAACCACGTCATGTGGCATACTGGTGAGACCCCCCATCGGTGCGACTTCTGCTCAAAAACCTTCACTCGCAAAGAGCACCTGTTGAACCACGTCCGCCAGCACACGGGTGAATCCCCGCACCGATGCAACTTCTGTTCGAAGTCGTTCACTCGGCGCGAGCACCTCGTCAACCACGTGAGGCAGCATACCGGCGAGACGCCATTTCAGTGCGGATACTGCCCCAAGGCTTTTACGAGGAAAGACCACTTAGTGAACCACGTACGGCAACACACCGGTGAATCGCCCCACAAGTGCTCTTTCTGTACCAAATCGTTTACGCGCAAAGAACATCTAACAAACCATGTGCGTCAACATACGGGCGAGTCGCCGCACCGCTGCAGTTTCTGCGCCAAATCCTTCACTAGGAAGGAACACCTTACTAACCATATCAGACAGCACACGGGTGAAACTCCGCACAAGTGCACGTACTGCACGCGCGCGTTCTCGCGCAAGGAACACCTCAACAACCACATCCGGCAGCACACGGGCGACATGCCGCACGCCTGCACCTTCTGTACCAAGACCTTCAACCGGAAGGAGCATCTCGTCAACCATATCAGGCAACATACAGGCGAGACGCCGTTCAAGTGCACGTACTGCTCAAAGTCGTTCTCGCGCAAGGAACACCTCACCAACCACGTTCACCTGCACACCGGCGAGACTCCACACAAGTGCGCGTTTTGCACTAAGACCTTTTCGAGGAAGGAGCATTTAACCAACCATATCAGAATACATACTGGTGAGTCACCACATCGCTGTGAATATTGTCAAAAGACGTTCACACGCAAGGAGCACCTAACGAATCATTTGAAACAACATACCGGTGATACGCCGCACTCTTGTAAAGTTTGCTCCAAGCCGTTCACCAGAAAAGAACATCTAGTTACACACATGAGGTCACATAGTTGTGGCCAACGGCCCTTCAGCTGTGGCGAGTGCGGCAAGTCGTTCCCACTTAAAGGCAATCTACTTTTCCACGAGAGGTCACATAATAAGAACAATGGGGGCAGTGGCTCCCGGTCATACCGCTGTGATATTTGCTCCAAAGACTTCCTCTGTAAAGTACACTTGGTGGCGCACCGGCGAACGCACAATGAAGCGGCTGAGGGTGCCGCTAGTGCAGAAGCTCCGGCCGAGACTGAAGACTGCGGCGACTGCAATAAGTGCGACAAGATCGACACCGAGCGCACAGAAAGGAAACACGAAGTCAGAACAACTACAGAGAACTTGCCAGCTGAGAGCAATGTCGCACAAACCCAACAAAGTAACGCAACTGTGATGCAAATTACGAGTCAACAGGTTCGGGCGGCGACGAGCGGCGCGAGCGTCCCGAGCGTCCCGAGCACGTTCACGGTGAGCGCGCAGCACCACGGCGGCGCCGCGCTCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence: MNPEHHSINTGGGQPPGSSESQSQRVQSAQQQQQASNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQTHASILNGDPNIILGHHTGQPQVTVSAGGGQQIPVSQIIATQSGQTHEAMVAHSQQELAAQQASSNTQVTVSPGQPTHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHLMQQQLMASTRQEHSNQQIQLTVSEDGIVTVVEPGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAGDQLIVKDEKNVSKIETAQFAEIKDIKGIDLKSAMGMEGAVVKISGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQQQQTKVITEVDVEAGTSAMAEVESSSEHHSCDICGKIFHFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPVERHAKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSFCAKSFTRKEHLTNHIRQHTGETPHKCTYCTRAFSRKEHLNNHIRQHTGDMPHACTFCTKTFNRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCAFCTKTFSRKEHLTNHIRIHTGESPHRCEYCQKTFTRKEHLTNHLKQHTGDTPHSCKVCSKPFTRKEHLVTHMRSHSCGQRPFSCGECGKSFPLKGNLLFHERSHNKNNGGSGSRSYRCDICSKDFLCKVHLVAHRRTHNEAAEGAASAEAPAETEDCGDCNKCDKIDTERTERKHEVRTTTENLPAESNVAQTQQSNATVMQITSQQVRAATSGASVPSVPSTFTVSAQHHGGAALAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01071806;
90% Identity: iTF_00006447;
80% Identity: -