Basic Information

Insect: Pyrausta nigrata
Gene Symbol: -
Assembly: GCA_949316185.1
Location: OX438943.1:13617014-13649382[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 9.2e-05 0.0084 17.5 2.2 1 23 421 443 421 443 0.97

2 20 0.0048 0.43 12.1 0.6 1 20 449 468 449 471 0.94

3 20 2.4e-05 0.0022 19.3 5.6 1 23 490 512 490 512 0.98

4 20 0.00011 0.01 17.2 4.1 1 23 518 540 518 540 0.99

5 20 4.1e-05 0.0037 18.6 5.3 1 23 546 568 546 568 0.97

6 20 3.7e-05 0.0034 18.7 7.8 1 23 574 596 574 596 0.97

7 20 6.1e-07 5.5e-05 24.3 3.1 1 23 602 624 602 624 0.98

8 20 0.00012 0.011 17.1 6.7 1 23 630 652 630 652 0.97

9 20 0.00012 0.01 17.2 6.5 1 23 658 680 658 680 0.97

10 20 5.6e-07 5.1e-05 24.4 1.9 1 23 686 708 686 708 0.98

11 20 5.7e-05 0.0052 18.1 7.9 1 23 714 736 714 736 0.98

12 20 4.9e-05 0.0045 18.3 6.6 1 23 742 764 742 764 0.98

13 20 2.6e-05 0.0024 19.2 6.4 1 23 770 792 770 792 0.98

14 20 1.2e-05 0.001 20.3 4.5 1 23 798 820 798 820 0.97

15 20 4.3e-05 0.0038 18.5 6.1 1 23 826 848 826 848 0.97

16 20 2.8e-05 0.0026 19.1 6.1 1 23 854 876 854 876 0.98

17 20 1.9e-05 0.0017 19.6 8.0 1 23 882 904 882 904 0.97

18 20 3.8e-06 0.00035 21.8 5.5 1 23 910 932 910 932 0.97

19 20 0.00052 0.047 15.1 0.2 1 23 939 961 939 961 0.97

20 20 0.32 29 6.3 4.2 1 23 969 991 969 991 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	9.2e-05	0.0084	17.5	2.2	1	23	421	443	421	443	0.97
2	20	0.0048	0.43	12.1	0.6	1	20	449	468	449	471	0.94
3	20	2.4e-05	0.0022	19.3	5.6	1	23	490	512	490	512	0.98
4	20	0.00011	0.01	17.2	4.1	1	23	518	540	518	540	0.99
5	20	4.1e-05	0.0037	18.6	5.3	1	23	546	568	546	568	0.97
6	20	3.7e-05	0.0034	18.7	7.8	1	23	574	596	574	596	0.97
7	20	6.1e-07	5.5e-05	24.3	3.1	1	23	602	624	602	624	0.98
8	20	0.00012	0.011	17.1	6.7	1	23	630	652	630	652	0.97
9	20	0.00012	0.01	17.2	6.5	1	23	658	680	658	680	0.97
10	20	5.6e-07	5.1e-05	24.4	1.9	1	23	686	708	686	708	0.98
11	20	5.7e-05	0.0052	18.1	7.9	1	23	714	736	714	736	0.98
12	20	4.9e-05	0.0045	18.3	6.6	1	23	742	764	742	764	0.98
13	20	2.6e-05	0.0024	19.2	6.4	1	23	770	792	770	792	0.98
14	20	1.2e-05	0.001	20.3	4.5	1	23	798	820	798	820	0.97
15	20	4.3e-05	0.0038	18.5	6.1	1	23	826	848	826	848	0.97
16	20	2.8e-05	0.0026	19.1	6.1	1	23	854	876	854	876	0.98
17	20	1.9e-05	0.0017	19.6	8.0	1	23	882	904	882	904	0.97
18	20	3.8e-06	0.00035	21.8	5.5	1	23	910	932	910	932	0.97
19	20	0.00052	0.047	15.1	0.2	1	23	939	961	939	961	0.97
20	20	0.32	29	6.3	4.2	1	23	969	991	969	991	0.98

Sequence Information

Coding Sequence: ATGAATCCTGAACACCACAGTTTGAACACGGGTGGTGGCCAGCCTCCTGGAAGTTCGGAGTCCCAGAACCAAAGGGTTCAATCTGCtcagcagcagcagcagggCAACAATTTGCCCGCTACAACCTCTGCGACAGATTTACGAGTGAATTCTGCGGCCGTGAACGTCGCTTTGTCAAGCGTCGCCAAATACTGGGTGTTTACAAACTTATTTCCGGGCCCAATACCACAAGTTTCCGTATATGGTTTGCCCACTGGTGCACGGATTGAAAATGGGAAACCTGTCCAGGACATTGGACAACATGCAAGCATACTCAATGGTGATCCCAATATCATTTTGGGACATCACGGCGGGCAGCCACAAGTCACAGTATCAGCAGCTGGGACTCAACAGATACCTGTATCTCAAATTATTGCTACACAATCAGGACAAACACATGAAGCGTTGGTGGCCCACAACCAGCAACAAGAGTTGGCTGCTCAGCAAGCGACGGGCACCACTCAGGTCACAGTTAGTGCAGCCCAACACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCATGTGGGGCATCATTCACAACAACATTTAATGCAGCAGCAACTCATGGCCACTGCCCGTCCGGAACACTCTAACCAGcagATTCAGCTGACAGTCAGTGAAGACGGCATCGTCACCGTGGTGGAGCCTGGCGGAGGCAAGCTGGTGGACAAGGAAGAGCTACACGATGCCATCAAGATGCCCACAGACCATACTCTCACAGTGCACCAGCTACAACAGATTGTGGGACAGCAGGTGATCGACAGCGTAGTACGCATAGAACAGGCCACAGGGGAGCCCGCGAACATCCTGGTGACCCACAACCCTGACGGCACCACTTCAATAGAGGCCAGTGCTGGCGAACAACTCATAGTAAAAGACGAGAAGCACTCCGGCGGGAAGATCGAGACCGCGCAGTTCGCTGAGATCAAAGACATTAAAGGAATAGACTTGAAGAGTGTCGGTGCCATGGGCATGGAGGGTGCTGTAGTGAAGATCTCTGGAGCCTCAGAGCACGACCTTCACGCCATGTACAAAGTCAACGTAGAGGACCTATCACAGCTGCTAGCTTACCACGAAGTGTTTGGGAAACTGAACGCCGACGGCCAGCAGCAAGCCAAGGTAATAAGCGAAGTTGAAGTAGAGGCGGGAACAAGCGCCGGAATGTCCGAAGCGGACTCGTCGCCCGGACATCACTCGTGCGATATTTGCGGAAAGATATTCCAGTTCCGATATCAACTTATCGTCCACAGACGATATCACGGGGAGAGTAAACCATTTACATGTCAAGTTTGTGGTTCCGCCTTTGCCAATCCGGTCGAATTATCAAGACATGGAAAATGTCATCTtgCCGGAGATCCGACCGAGCGACACGCGAAGCGTCTGACGCAAGACAAGCCGTACGCCTGCACCACTTGCCATAAGACGTTCTCGCGCAAGGAGCATCTCGACAACCATGTGCGAAGCCATACTGGCGAGACGCCGTACAGATGCGAATTCTGCGCGAAGACATTCACCCGCAAAGAGCACATGGTGAACCACGTCCGAAAACATACGGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTTACCAGGAAAGAACACTTTATGAACCACGTCATGTGGCACACAGGTGAAACGCCACACCATTGCACATTATGCGGTAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCGCACTCAAATGATACGGCGTTTCGTTGCGATCTGTGCGGCAAGTCGTTCACAAGAAAGGAGCACTTCACCAATCACATAATGTGGCATACCGGCGAAACCCCACACCGTTGCGACTTCTGCTCAAAAACGTTCACTCGCAAGGAACATCTGTTGAACCACGTCCGCCAACACACGGGGGAGTCCCCGCACCGGTGCAACTTCTGTTCGAAGTCGTTCACGCGGAGAGAACATCTCGTGAACCATGTGAGGCAGCATACTGGAGAAACGCCCTTCCAGTGCGGATACTGTCCCAAGGCCTTTACGAGGAAGGATCACCTCGTGAATCACGTACGACAGCACACTGGTGAATCTCCCCACAAGTGTTCATTCTGCACCAAGTCGTTCACGCGCAAAGAACACCTCACCAACCACGTGCGCCAACACACGGGGGAGTCGCCCCACCGGTGCTCGTTCTGCGCGAAATCATTCACACGGAAGGAACACCTTACTAACCATATCAGACAGCACACGGGTGAAACGCCACACAAGTGTTCGTTCTGCCCGCGCTCGTTCACGCGCAAGGAACACCTGAACAACCACGTGCGCCAGCATACCGGCGAGCTGCCGTTCAACTGCTCGTACTGCACCAAGAGCTTCACGAGGAAGGAACACCTTGTCAGTCATGTCAGGCAACACACAGGCGAGACCCCGTTCAAATGCGCGTACTGCACGAAATCGTTTTCGCGCAAGGAGCATTTGACGAACCACGTGCACCTCCATACTGGCGAGACGCCGCATAAGTGCGCCTTCTGCACTAAGACATTTTCCAGGAAGGAACATCTTACCAACCATGTCAGAATCCACACAGGCGAGTCGCCTCACCGCTGTGAGTTCTGTCAGAAGACGTTCACCCGTAAGGAGCATCTGACGAACCACATGAAGCAGCACACGGGCGACAAGCCGCACATCTGCAAGGTCTGCTCCAAAACCTTCACCAGGAAGGAACATCTCGTCACTCATATGAGGTCGCACAGTTGCGGCGACCGGCCGTTCAGTTGCGGCGAGTGCGGCAAGTCGTTCCCGCTGAAGGGCAACCTGATATTCCACGAGCGCTCGCACAAAAGTGGCGGCGTGCGACCGTTCCGATGCGACGTGTGCTCCAAGGACTTCTTATGTAAAGGGCACCTAGTGGCGCACAGACGGACACACGGCGAACCCGAGGCGGCGGTCGCACAGCCCGACGGCGACGACTGCGGCACCGACTGCAACAAGTGCGAGACGATGGAGGAACAGCCAGAGAGGAAACACGACATTAGAGTGAGCACAGAAAGTAGACCAGCAGACAGTGATGTCACCCAGAGTGAAACGAATGTAGCCGTGATGCAATTAACGAGTCAGcaGCAAGTGCGTGCGGCGGGGTCTAGCGGCAGCACGAGCGCGACGTTCACGCACAGCGCGGCGCAGCACCACGCCGGCGCCGTGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence: MNPEHHSLNTGGGQPPGSSESQNQRVQSAQQQQQGNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQDIGQHASILNGDPNIILGHHGGQPQVTVSAAGTQQIPVSQIIATQSGQTHEALVAHNQQQELAAQQATGTTQVTVSAAQHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHLMQQQLMATARPEHSNQQIQLTVSEDGIVTVVEPGGGKLVDKEELHDAIKMPTDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAGEQLIVKDEKHSGGKIETAQFAEIKDIKGIDLKSVGAMGMEGAVVKISGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNADGQQQAKVISEVEVEAGTSAGMSEADSSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPTERHAKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTLCGKKYTRKEHLVNHMRSHSNDTAFRCDLCGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSFCAKSFTRKEHLTNHIRQHTGETPHKCSFCPRSFTRKEHLNNHVRQHTGELPFNCSYCTKSFTRKEHLVSHVRQHTGETPFKCAYCTKSFSRKEHLTNHVHLHTGETPHKCAFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHTGDKPHICKVCSKTFTRKEHLVTHMRSHSCGDRPFSCGECGKSFPLKGNLIFHERSHKSGGVRPFRCDVCSKDFLCKGHLVAHRRTHGEPEAAVAQPDGDDCGTDCNKCETMEEQPERKHDIRVSTESRPADSDVTQSETNVAVMQLTSQQQVRAAGSSGSTSATFTHSAAQHHAGAVHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01071806;
90% Identity: iTF_00075762;
80% Identity: -