Isal009983.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ithomia salapia
Gene Symbol
L
Assembly
GCA_028829205.1
Location
JAPOND010000105.1:77698-83424[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.3 1.1e+02 4.3 4.8 1 23 3 25 3 25 0.97
2 17 7.4e-06 0.00063 20.7 4.1 1 23 31 53 31 53 0.99
3 17 2.3e-05 0.002 19.2 0.1 1 23 59 81 59 81 0.98
4 17 0.0019 0.16 13.1 0.1 2 23 97 119 96 119 0.94
5 17 0.85 73 4.8 0.2 9 23 150 165 146 165 0.96
6 17 0.26 23 6.4 0.0 3 23 221 241 220 241 0.97
7 17 1.9 1.6e+02 3.7 0.0 3 23 256 276 255 276 0.87
8 17 0.00017 0.014 16.5 1.0 1 23 284 307 284 307 0.91
9 17 0.0067 0.58 11.4 0.1 1 23 312 335 312 335 0.93
10 17 0.0006 0.052 14.7 0.1 1 23 372 396 372 396 0.98
11 17 0.00017 0.015 16.4 0.1 2 23 454 475 453 475 0.96
12 17 0.05 4.3 8.7 0.0 1 23 483 505 483 505 0.98
13 17 1.9 1.6e+02 3.7 1.0 2 23 513 534 512 535 0.93
14 17 8.4 7.2e+02 1.7 0.0 3 23 542 562 541 562 0.93
15 17 0.4 35 5.8 0.6 1 23 609 631 609 631 0.94
16 17 0.0047 0.4 11.9 0.1 1 20 639 658 639 661 0.95
17 17 0.088 7.6 7.9 0.3 1 23 668 690 668 690 0.94

Sequence Information

Coding Sequence
ATGCCGTTCCGGTGTGAGTTCTGCGCTCGTTTGTTCAAGCACAAGCGGTCTCGTGATCGCCACGTGAAGCTGCACACTGGAGATAGAAAGTACAGATGTGCTCACTGTGAATCAGCTTTTTCCAgaagTGATCATTTGAAAATCCATATGAAGACACACGACAACCAGAAACCGTTTCAATGCACGGTTTGCAATCGGGGTTATAACACAGCCGCAGCTCTCACATCCCACATGCAGGGCCACAAACGAGACCGGGAGGGAAGGGATAATGACCGTAGAAGAACATTGCGTTGTCTGCGTTGTGGAGATGCATTTAGAAGAGCTGATATGCTACAGGCTCATATGGTGAGTGCGCATGGGGTTGACGTAGCATCCATGACTCCACCGCGACGAGTTGCTTCTCAACCGCCACCTACTTTACTTGCTTGCATTTATTGCACTCGTGATACATTTACAAGTATGGAACAGTTACAGTTGCACGTACGGACAGCTCATTCTGCTTTACTTAATGGAGAATCTCCAATTCAGTATTCTGAAGATCAGCCTGGTCCTACAGATCTAAGTAGACGAGGCTCAGAAGATGTTTCTCCGATAAAACGTCCAAAATTAAGTTCTGGGTCCACTACACCCAAAAATGCGTTGTCGCCGAGTACCTTATTATGTAATCAATGTGATGCGGCTTTGCCCGATTTTGAAGCGTTTCGGGCGCATTTAAAAGGTCATCTCGAAGAAGGTGGAGAATTAGGACGAACTAGTCCAAATCCGTGCATTCATTGCGGAGCAAGTTTTGCCGACGCCGCTGCCTCCGAACGTCACCTCGCTGCACATTATTTAGCAGTATCATGTGAATATACATGTCACAGCTGTGCGCGCAGTTTTCCAACTCCTGAAGACCTACAAAAGCATCTATTCGATTTACATACCCACCACATGTACAGATGTACATTTTGCAAAGAAGTATTTGATTCAAAAGTTGCCATTCAGGCTCACTTCGCAGTAGCACACAGTGGAGAGAATAAAGTATGGGTGTGTCGTTCTTGCGGCACTGCGGGTGGTCCCTTACGCTCGGAGGCTGAGGGTGCGGCTCACGTCCGCGCTCCTTCACACCACGCGTACCGCTGTCCCGTCGCCACGTGCACGGACTCCTTCGCTGTTCAATATCTACTGGAGCGACACATGCAAATGCATCAAGCGGTTACGCATCAGAGTATCAATGGTGATAGAACTAAACGGACAGAGAATAACAATGCCGTTGAAGGGGATGATGCATGTTCTCCGTGTATTTCCGTAGCCGATAATAATGGGCCAATCGCGACGGGCGGCGAAGAACGACGACGCAAAAATGGTGCTGTAGCCTTACAATGTGCATATTGTGGGGAAAGAACACGCAGCAGGGCGGAGTTAGAAGCTCACACTCGAGCACATTCTGGTACAGGTGCTGCGCGTCACAAGTGCCTCATTTGTGATGAAGTTCTACCCTCAGCCGCGGTGCTAGCTGAACATAAACTAACCCACTGCAAGgtTGTCGCAGGAGACACGTGTTCACGATGTCGGTCACGACTACCTTCTGAAGATGCATTTCTAAGTCATATGGCACGCCATCATCCGGCTTTACCAGCACCTTGCGTCATTTGTCGTCAAACTTTAGCTTCAGAGGCTGAAGCTCGTTTACATGCACGTTTTCACTTAAGACCTTTAGAAGATGAACAAAGATGTGCAATTTGTCTTAGAGCATTGTCAGAAAACGAGACTGGCGAAGGTGCTAGGGCATGTTCTGCTTGTTATGCTAGACACGCCGCTCCGAGATCACAAACTGCTACGGATCATGATTGTAGATTATGCCGTCGAACCCTGGGTTCACCGACTCGTCTACAGGCTCATCTAATCGAACATACATTTGCTGGCATAGGCGCTTTTACATGTTATTTATGCTCCGCGATGTTTACGAGTGCAGCAGGCCTACAAAGACATCTACCAGAACATGCTGCTGCACCAAGACCCTACGATTGTGGACGATGTGGTTTGAAATTTTTCTTTAGAGCTGAACTCGATAACCACGCCTTTGTACATCTTGAAGAAGCAGAAATTGCACAAAGAGCCTTTTACGAGGCCTATGCTCGAGGTGCTGCGACCGCTTGGGCTGCTTTACAACCCACAGAATTGCAACCACAATCAGCAGCTTCAACTCCTGCACCTCCACTGAATGAAGTATCCGTCAAGCAAGAACCAGAAATTAAGGAGGAACGCAACGATGAATACATTGAAGTGTCATCGCCCCCACCACATAAATCTGAGCCAGCGTCATCTCCTTCACCAACAGTAAAGCAAGAGAAAAATGATGAAGACTGA
Protein Sequence
MPFRCEFCARLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRDNDRRRTLRCLRCGDAFRRADMLQAHMVSAHGVDVASMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRTAHSALLNGESPIQYSEDQPGPTDLSRRGSEDVSPIKRPKLSSGSTTPKNALSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGRTSPNPCIHCGASFADAAASERHLAAHYLAVSCEYTCHSCARSFPTPEDLQKHLFDLHTHHMYRCTFCKEVFDSKVAIQAHFAVAHSGENKVWVCRSCGTAGGPLRSEAEGAAHVRAPSHHAYRCPVATCTDSFAVQYLLERHMQMHQAVTHQSINGDRTKRTENNNAVEGDDACSPCISVADNNGPIATGGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGTGAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCSRCRSRLPSEDAFLSHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPLEDEQRCAICLRALSENETGEGARACSACYARHAAPRSQTATDHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHAAAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALQPTELQPQSAASTPAPPLNEVSVKQEPEIKEERNDEYIEVSSPPPHKSEPASSPSPTVKQEKNDED