Vtam000508.1
Basic Information
- Insect
- Vanessa tameamea
- Gene Symbol
- L
- Assembly
- GCA_037043105.1
- Location
- CM073277.1:8284140-8299688[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.1e-06 0.00045 21.0 2.0 1 23 89 111 89 111 0.99 2 17 0.65 48 5.1 5.8 1 23 117 139 117 139 0.97 3 17 8.7e-06 0.00064 20.5 4.1 1 23 145 167 145 167 0.99 4 17 1.8e-05 0.0013 19.5 0.1 1 23 173 195 173 195 0.98 5 17 0.0012 0.087 13.8 0.0 2 23 211 233 210 233 0.95 6 17 6.2 4.5e+02 2.1 0.1 9 23 264 279 260 279 0.93 7 17 0.31 23 6.1 0.0 3 23 336 356 335 356 0.97 8 17 0.17 13 7.0 0.0 3 23 371 391 370 391 0.91 9 17 0.00015 0.011 16.6 1.1 1 23 399 422 399 422 0.94 10 17 0.019 1.4 10.0 0.1 1 23 427 450 427 450 0.93 11 17 0.0026 0.19 12.7 0.4 1 23 510 534 510 535 0.95 12 17 0.0002 0.015 16.2 0.1 2 23 594 615 593 615 0.96 13 17 0.06 4.4 8.4 0.0 1 23 623 645 623 645 0.97 14 17 1.8 1.3e+02 3.7 1.1 2 23 653 674 652 675 0.93 15 17 0.48 35 5.6 0.6 1 23 749 771 749 771 0.94 16 17 0.0056 0.41 11.7 0.1 1 20 779 798 779 801 0.95 17 17 0.1 7.7 7.6 0.3 1 23 808 830 808 830 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTATTTAAAGGCAACAGCAGCAGGTTAGAGCATCTCATAGAGAAGATACAAGCAAATAAGGAAAACCACGACGTTACCTCGGACGATTTAAAACAGGCACTGGGGAGCGTTGGCAGTACGGCGGGGAGCTCGTGGCCGTCGTCGACGCCGGAGCCATCTCCGTCGCCTGCCTCTACACCCACCTCAGCGGATGCTGTAGACGCTGATGCGGATGCAGACCCACCGTTCACCCTCGGGGCAACTGAGCACACGCCTTATAAATGCCAATTTTGTGAAAAGGCTTTTCCTAGGCTATCGTATCTTAAAAAACATGAACAGACACACTCCGATCAGATGCCTTTTCGATGTGAATTCTGTTCACGACTGTTCAAGCACAAGAGATCTCGGGATCGCCACGTAAAATTGCACACCGGCGACCGAAAGTACCGCTGCGCGCACTGCGAATCCGCTTTCTCTAGAAGtgatcatttaaaaattcaCATGAAGACTCACGACAATCAAAAGCCGTTTCAATGTACGGTATGCAATCGGGGATATAATACAGCCGCTGCACTCACAGCACATATGCAAGGTCACAAGCGAGATCGTGAGGGCCGCGAAACTGATCGGAAGAGAGCTCTGCGATGTTTACGATGTGGAGATGCCTTTAGACGCCCTGAAATGCTTCAAgCGCATATGGCAAGTGCTCATGGCATGGAGGCAACTTCCGTGACACCACCGCGCCGGGTTGCATCTCAACCACCACCTACATTACTCGCTTGCATTTATTGTACTCGTGATACTTTTACAAGTATGGAACAATTACAATTACATGTACGCGCCGCACACTCGGCTCTATTAAATGGAGAATCttctatacattatacattagaACAACCGTTACCCACTGATTTAAGTAGAAGAAGTCCTGAAGAAGTATCATCTCCAGCAAAACGTCCGAGATTAGGTTCGGGCTCTTCTACTCCAAAAATAGCACTTTCTCCAAGCACTCTTCTATGCAATCAATGTGATGCAGCTCTGCCTGATTTTGAGGCATTTCGAGCACATTTAAAAGGTCACATTGAAGAAGGTGGAGATATAGGTAGATCAAGTCCAGCACCTTGTCTCCATTGTGGAGCTACATTTGCTGATGCAGCAGCATCTGAACGTCACCTGGCTGCACATTACCTTGCTGTGTCCTGTGAATATTCTTGTCACAGCTGTGTGCGCAGTTTTCCTACTTCTGAAGATTTGCAGAAACATTTGCTCGACCTTCATGCTCATCACTTATATCGCTGCACTCTTTGTAAGGAAATATTTGATTCAAAAGTTGCTATTCagGCACATTTCGCGGTTGCTCATACCGGAGAAAATAAAGTTTGGGTGTGTCGGTCTTGCGGAACTGCTGGTGGTCCATTACGCACCGAGGCTGAGGGTGCCGCTCATGTTCGTGCACGTCACGCAGCTGCACAATGTGCATGTGGTGCTATATTAGCTGGGTCGCGGGCTCTACGAGCACACACAGCAGCCCATCATGCCTATCGTTGCCCTGTACCATCTTGTACCGATACTTTCGCGGTACAGTATTTACTTGAACGCCATATGCAAGTACATCATACCGTTACTCATCAGAGTATAAACGGTGATATGACAAGGCCTAAGCGAACAGAAAATAACAATGCAATAGAAGGTGATGATGCATGTTCTCCATGTATTCCTAGCGGTGATGGAAATGGGCCTTTGGCTACAGCTAGTGACGATCGTCGCCGTAAAAATGGAGCAGTTGCTCTCCAGTGCGCATACTGTGGTGAGCGTACTCGCAGTAGAGCTGAACTTGAAGCCCACACGCGTGCACATTCAGGAACAGGTGCTGCACGACATAAGTGTCTCATTTGTGATGAAGTGCTTCCGTCGGCTGCAGTTCTAGCCGAGCATAAATTAACCCATTGCAAGGTAATTGCGGGTGACACATGCTCTCGATGTCGTTCACGACTACCTACAGAAGAAGCTTTTCTGAATCATATGGCACGGCATCATCCTGCTCTTCCAGCGCCTTGCGTCGTATGTCGTCAAACTTTGGCATCGGAAGCAGAAGCGCGATTACATGCAAGATTTCATTTAAGGCCAACTGAGGATGAACAAAGATGCGCCATTTGCCTAAGACCTCTATCTGAAACTGAAGCAGGTGAAGGTGCACGAGCTTGCACCGCCTGTTACGCTCGTCATGCAGCTCCGAGACCGACGCCTTCTTCCGAACACGATTGTCGGCTATGCCGTCGAACTTTAGGTTCACCAACACGTTTACAAGCCCATTTAATCGAGCATACCTTTGCAGGTATTGGAGCATTTACATGTTACTTATGTTCTGCAATGTTCACAAGTGCTGCGGGATTGCAAAGGCATTTACCAGAACATGCTGCGGCACCGAGACCATACGATTGCGGTCGATGTGGCTTAAAGTTTTTCTTTCGAGCTGAACTTGATAACCACGCATTTGTTCATCTTGAAGAAGCAGAAATAGCACAAAGAGCATTTTACGAAGCGTATGCCCGCGGGGCTGCGACAGCGTGGGCGGCTTTGCAACCTACTGATTTAGCGCTACAGTCCTCGGCATCGACTCCAGCTCCTGTAAATGATATACCAATAAAACAGGAACCAGAAGTAAAGGAAGAACGAAATGATGAATATATAGAAGTTTCGTCTCCCCCTCCTCCTGTAATACAGCAATCAGAGACTATGTCATCTCCACCTCCGATAATAAAacaggaaaaaaataatgaagactGA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVTSDDLKQALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAVDADADADPPFTLGATEHTPYKCQFCEKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTAHMQGHKRDREGRETDRKRALRCLRCGDAFRRPEMLQAHMASAHGMEATSVTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGESSIHYTLEQPLPTDLSRRSPEEVSSPAKRPRLGSGSSTPKIALSPSTLLCNQCDAALPDFEAFRAHLKGHIEEGGDIGRSSPAPCLHCGATFADAAASERHLAAHYLAVSCEYSCHSCVRSFPTSEDLQKHLLDLHAHHLYRCTLCKEIFDSKVAIQAHFAVAHTGENKVWVCRSCGTAGGPLRTEAEGAAHVRARHAAAQCACGAILAGSRALRAHTAAHHAYRCPVPSCTDTFAVQYLLERHMQVHHTVTHQSINGDMTRPKRTENNNAIEGDDACSPCIPSGDGNGPLATASDDRRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGTGAARHKCLICDEVLPSAAVLAEHKLTHCKVIAGDTCSRCRSRLPTEEAFLNHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPTEDEQRCAICLRPLSETEAGEGARACTACYARHAAPRPTPSSEHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHAAAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALQPTDLALQSSASTPAPVNDIPIKQEPEVKEERNDEYIEVSSPPPPVIQQSETMSSPPPIIKQEKNNED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842895;
- 90% Identity
- iTF_00695901;
- 80% Identity
- -