Hsem002475.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- L
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000012.1:2089918-2110316[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.3e-06 0.00017 22.1 2.3 1 23 100 122 100 122 0.98 2 15 1.1e-05 0.00059 20.5 4.1 1 23 156 178 156 178 0.99 3 15 1.6e-05 0.00083 20.0 0.1 1 23 184 206 184 206 0.98 4 15 0.00082 0.043 14.6 0.3 2 23 222 244 221 244 0.94 5 15 8 4.2e+02 2.1 0.1 9 23 275 290 271 290 0.93 6 15 0.4 21 6.1 0.0 3 23 344 364 343 364 0.97 7 15 0.22 12 6.9 0.0 3 23 379 399 378 399 0.91 8 15 0.00023 0.012 16.3 1.6 1 23 407 430 407 430 0.91 9 15 0.012 0.65 10.9 0.1 1 23 435 458 435 458 0.94 10 15 0.00054 0.029 15.2 0.2 1 23 518 542 518 543 0.95 11 15 0.00026 0.014 16.2 0.1 2 23 602 623 601 623 0.96 12 15 0.077 4.1 8.4 0.0 1 23 631 653 631 653 0.97 13 15 0.62 33 5.6 0.6 1 23 757 779 757 779 0.94 14 15 0.0072 0.38 11.6 0.1 1 20 787 806 787 809 0.95 15 15 0.14 7.1 7.6 0.3 1 23 816 838 816 838 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTATTCAAAGGCAACAGCAGCAGGTTGGAGCATCTGATAGAGAAGATTCAGGCTAACAAGGAAAACCACGACGTCACCACAGAGGAGATAAAACAAGCGTTGGGCAGCGTGGGCAGCGTGGGCAGCGTGGGTAGCGTGGGCAGCACGGGCGGCAGCTCGTGGCCGTCGTCCACGCCGGAGCCGTCGCCGTCGCCGTCGTCGACGCCGACGTCGCGCGACGCCGGCGACGCCGAGGCGGACGCGGACGCCGAGCCGCCCTACACGCTGGGCGCCACCGAACACACtccatacaaatgtaaattctGCGACAAGGCCTTCCCCAGGCTCTCCTACCTCAAGAAGCATGAACAGAGTCATTCGGATCAGATGCCATTCCGCTGCGAGTTCTGTTCGCACCTGTTCAAGCACAAGCGTTCGCGCGACCGCCACGTCAAGCTTCACACCGGCGACCGCAAGTACCGCTGCGCGCACTGCGAATCTGCTTTCTCCAGGAGTGACCATCTGAAGATACACATGAAAACGCACGACAACCAAAAGCCGTTCCAATGCACCGTGTGTAACCGCGGCTACAGCACGGCGGCCGCGCTCACGTCCCACATGCAGGGCCACAAGCGTGAGCGTGAGGGACGTGAGTCCAATCGGAAGCGAGCCTTGCATTGCTTGCGCTGCGGAGACTCGTTCCGGCGACCGGATCTCTtacaagcTCACATGGCAAGTGTCCATGGCGTCGACTCGACCTCAATGACACCTCCACGTCGAGTCGCGTCTCAGCCCCCACCAACTCTTCTCGCATGCATATATTGCACCCGAGATACTTTTACTAGTATGGAGCAGTTGCAACTACACGTACGCGCAGCTCATTCGGCGCTGTTGAACGGAGAAACTTCAGCACAGTACACAGTCGACCAGCCCATGCCCACCGACCTGAGTAGGCGCAGTCCCGAAACATCAACACCAGCTAAACGAACTAGGCCAGGCTCTGCAACACCAAAGAGTTCTTTATCCCCGAGCACACTTCTGTGTAACCAGTGTGATGCTGCGCTACCAGACTTCGAAGCTTTTCGAGCCCATTTGAAAGGGCATCTTGAGGAAGGGGGAGAGCTGAGCAGGACGAGCCCAGCGCCGTGCGTGCACTGCGGCGCGACGTTCGCCGACGCGGCGGCCTCCGAGCGACACTTGGCAGCGCATTACCTAGCCGTGTCTTGTGAATATTCCTGCCACAGCTGTGTGCGCAGCTTTTCCTCGCCGGAAGATTTGCAAAAACACCTTTTCGACATGCACTCTCATCATATGTACCAGTGCAATCTTTGCAAAGAAATATTTGATTCCAAAGTAGCCATTCAGGCTCACTTCGCGATGTCTCACAGCACTGAGAACAAAGTGTGGGTGTGTCGCTCCTGTGGCTCCGCGGGAGGGGCGCTGCGCACGGAGGCGGAGGGCGCGGCGCACGTGCGCGCACGGCACGCGGCGTCACGCTGCGCATGCGGCGCCGTGCTCGCGGGCGCACGCGCGCTGCGAGCGCACGCGGCCGCGCACCACACCTACCGGTGCCCTGTTCCCGCTTGCACTGAATCTTTCGCCGTGCAGTATCTGCTCGAGCGTCACATGCAAGGGCATCATGCTGTTACGCATCAAGGTCTCAACGGCGATATGATAAGGAGCAAGAGAACAGAAAATAACAACGCCGTTGAAGGCGATGGCGCGAATTCTCCTTGCATCAGCGCGGGAGACGGCAACGGGCCGATGGTTTCGGGCGGCGAGGAGCGCAGGCGGAAGAATGGCGCGGTGGCGCTGCAGTGCGCGTACTGCGGCGAGCGCACGCGCAGCCGCGCCGAGCTGGAGGCGCACACGCGCGCGCACGCCGGCGCGGGCGCCGCAAGACACAAGTGCCTCATATGCGATGAAGTCCTGCCCTCTGCTGCCGTCCTCGCTGAGCATAAACTTACGCATTGCAAGgtaATCGCCGGTGACACCTGTGCTCGATGCCGCTCAAGGCTGCCATCAGAAGAAGCTTTCTTGAGTCACATGGCACGTCACCATCCTGCATTGCCAGCCCCTTGCGTCATATGTCGTCAAACGTTAGCTTCGGAGGCTGAAGCGCGTTTACACGCCCGTTTCCACTTACGACCGAACGAAGATGAACAGAGGTGTGCGATATGCCTGAGAGCGTTGTCTGAGAGTGAGGCCGGGGAGGGTGCTCGGGCCTGCACATCTTGCTACGCTCGCCACGCTGCCCCTAGACCTCCTCCGCCCACTGATCACGACTGCCGTCTGTGCCGAAGGACTCTCGGTTCACCTACCCGCTTGCAAGCTCATCTCATTGAACACACATTCGCGGGTATAGGGGCGTTTACATGTTACCTCTGCTCTGCGATGTTCACAAGTGCGGCAGGATTGCAAAGGCATTTGCCGGAGCACGCCTCGGCGCCTAGACCCTATGACTGCGGCCGATGCGGTTTGAAGTTCTTCTTCCGAGCGGAGCTCGATAATCACGCGTTCGTTCATCTCGAAGAAGCCGAAATCGCTCAGAGAGCATTTTACGAAGCCTACGCTCGTGGGGCGGCATCGGCTTGGGCTGCTTTGCAACCGACAGACTTGGTATCCACGCCGGCTTCGGTAGATAACGAGGTGCCAGTCAAGCAAGAACCTGAGGTGAAAGAAGAGCGTAACGATGAGTATATTGAAGTGTCATCGCCCCCGCCCCCCCAGCCCCCCCAGCCCGAGCCGGCATCCACTTCTCCGCCGGTAGTGAAACAAGAGAAGCCCGACGAAGACTGA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVTTEEIKQALGSVGSVGSVGSVGSTGGSSWPSSTPEPSPSPSSTPTSRDAGDAEADADAEPPYTLGATEHTPYKCKFCDKAFPRLSYLKKHEQSHSDQMPFRCEFCSHLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQGHKREREGRESNRKRALHCLRCGDSFRRPDLLQAHMASVHGVDSTSMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETSAQYTVDQPMPTDLSRRSPETSTPAKRTRPGSATPKSSLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELSRTSPAPCVHCGATFADAAASERHLAAHYLAVSCEYSCHSCVRSFSSPEDLQKHLFDMHSHHMYQCNLCKEIFDSKVAIQAHFAMSHSTENKVWVCRSCGSAGGALRTEAEGAAHVRARHAASRCACGAVLAGARALRAHAAAHHTYRCPVPACTESFAVQYLLERHMQGHHAVTHQGLNGDMIRSKRTENNNAVEGDGANSPCISAGDGNGPMVSGGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHAGAGAARHKCLICDEVLPSAAVLAEHKLTHCKVIAGDTCARCRSRLPSEEAFLSHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPNEDEQRCAICLRALSESEAGEGARACTSCYARHAAPRPPPPTDHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHASAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALQPTDLVSTPASVDNEVPVKQEPEVKEERNDEYIEVSSPPPPQPPQPEPASTSPPVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842895;
- 90% Identity
- iTF_00954845;
- 80% Identity
- -