Basic Information

Insect: Nymphalis urticae
Gene Symbol: L
Assembly: GCA_905147175.1
Location: LR989984.1:8163283-8176721[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.8e-06 0.00053 20.9 2.0 1 23 131 153 131 153 0.99

2 16 0.61 57 5.1 5.8 1 23 159 181 159 181 0.97

3 16 8.2e-06 0.00076 20.4 4.1 1 23 187 209 187 209 0.99

4 16 1.7e-05 0.0016 19.4 0.1 1 23 215 237 215 237 0.98

5 16 0.0011 0.1 13.7 0.0 2 23 253 275 252 275 0.95

6 16 5.8 5.4e+02 2.0 0.1 9 23 306 321 302 321 0.93

7 16 0.29 27 6.1 0.0 3 23 377 397 376 397 0.97

8 16 0.16 15 6.9 0.0 3 23 412 432 411 432 0.91

9 16 0.018 1.6 9.9 0.1 1 23 468 491 468 491 0.93

10 16 0.0024 0.22 12.6 0.4 1 23 551 575 551 576 0.95

11 16 0.00019 0.018 16.1 0.1 2 23 635 656 634 656 0.96

12 16 0.056 5.2 8.3 0.0 1 23 664 686 664 686 0.97

13 16 1.7 1.6e+02 3.7 1.1 2 23 694 715 693 716 0.93

14 16 0.45 42 5.5 0.6 1 23 790 812 790 812 0.94

15 16 0.0052 0.48 11.6 0.1 1 20 820 839 820 842 0.95

16 16 0.099 9.1 7.6 0.3 1 23 849 871 849 871 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.8e-06	0.00053	20.9	2.0	1	23	131	153	131	153	0.99
2	16	0.61	57	5.1	5.8	1	23	159	181	159	181	0.97
3	16	8.2e-06	0.00076	20.4	4.1	1	23	187	209	187	209	0.99
4	16	1.7e-05	0.0016	19.4	0.1	1	23	215	237	215	237	0.98
5	16	0.0011	0.1	13.7	0.0	2	23	253	275	252	275	0.95
6	16	5.8	5.4e+02	2.0	0.1	9	23	306	321	302	321	0.93
7	16	0.29	27	6.1	0.0	3	23	377	397	376	397	0.97
8	16	0.16	15	6.9	0.0	3	23	412	432	411	432	0.91
9	16	0.018	1.6	9.9	0.1	1	23	468	491	468	491	0.93
10	16	0.0024	0.22	12.6	0.4	1	23	551	575	551	576	0.95
11	16	0.00019	0.018	16.1	0.1	2	23	635	656	634	656	0.96
12	16	0.056	5.2	8.3	0.0	1	23	664	686	664	686	0.97
13	16	1.7	1.6e+02	3.7	1.1	2	23	694	715	693	716	0.93
14	16	0.45	42	5.5	0.6	1	23	790	812	790	812	0.94
15	16	0.0052	0.48	11.6	0.1	1	20	820	839	820	842	0.95
16	16	0.099	9.1	7.6	0.3	1	23	849	871	849	871	0.94

Sequence Information

Coding Sequence: ATGTTGTCTAACGTTTGGCGATTGTCGTTGATTGGCGAGGCGCCGGCCGAGGTGTCTCAGACGCCGCAATTAGGAAATGAGCTTCCGCCGCCCACCGCCGCGGCGCCAATCGCCCCTGAATTGCTGCAATCGCAGCTAATTACGTTCTATAACCGATCACCATTGAATGTAGCATTAAAGAACATTGTCCTTGAAAACATTACTTATTATTTATTTTTTTGTCGAGCAGAGGCACTGGGGAGCGTTGGCAGTACGGCGGGGAGCTCGTGGCCGTCGTCGACGCCAGAGCCATCTCCGTCGCCGGCCTCTACGCCCACCTCAGCGGATGCTGTGGACGCCGATGCAGACGCAGACCCACCGTTCACCCTCGGGGCCACTGAGCACACGCCTTATAAATGCCAGTTTTGTGAAAAGGCCTTCCCTAGGCTATCATATCTTAAAAAACACGAACAGACTCACTCCGATCAGATGCCTTTTCGATGTGAATTCTGTTCACGACTGTTCAAGCACAAGAGGTCTCGGGATCGCCACGTAAAATTGCACACCGGCGACCGAAAGTACCGCTGCGCGCACTGCGAATCCGCTTTCTCTAGAAGTGATCATTTAAAAATTCACATGAAGACTCACGATAATCAAAAGCCGTTTCAATGTACGGTATGCAATCGTGGATACAATACGGCCGCTGCACTCACAGCACATATGCAAGGTCACAAGCGAGAGCGTGAAGGCCGCGAATCTGATCGGAAGCGAGCTCTGCGATGTTTGCGATGTGGAGATGCCTTTCGACGTCCTGAAATGCTTCAAGCCCATATGGCAAGTGCTCATGGCATGGATGCAATTTCTGTGACACCACCGCGCCGGGTTGCATCTCAACCACCACCTACATTACTCGCTTGTATTTATTGCACTCGCGATACTTTTACAAGTATGGAACAATTACAATTACATGTACGCGCTGCGCACTCAGCTCTATTAAACGGAGAGTCTCCTATACATTACTCAATAGAACAACCTTTACCCACTGATTTAAGTAGAAGAAGTCCTGAAGAAGTATCTCCAGCAAAACGTCCAAGATTAGGTTCGGGCTCTTCTACTCCAAAAATAGCACTTTCTCCGAGCACTCTTTTATGCAATCAGTGTGATGCAGCTCTGCCCGATTTCGAGGCCTTTCGAGCACATTTAAAAGGCCACATTGAAGAAGGTGGAGATATAGGTAGATCTAGTCCAGCACCTTGCCTTCACTGTGGAGCTACATTTGCTGATGCAGCTGCATCTGAACGTCATCTGGCTGCTCATTACCTTGCTGTGTCCTGTGAATATTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACATCTGCTCGATCTTCATGCTCATCACTTATATCGCTGCACTCTTTGTAAAGAAATATTTGATTCAAAAGTTGCTATTCAGGCACATTTTGCGGTCGCACATACCGGGGAAAATAAAGTTTGGGTTTGCCGGTCTTGCGGAACTGCTGGTGGACCATTACGTACCGAAGCCGAGGGTGCCGCCCATGTTCGTGCACGTCACGCAGCTGCAAGATGTGCATGTGGTGCTATATTAGCTGGGTCGCGTGCTCTACGAGCTCATACAGCAGCTCATCACGCCTATCGTTGCCCTGTACCATCTTGTACAGATACTTTCGCCGTGCAATATTTACTTGAACGTCATATGCAAGTGCATCATGCAGTTACTCATCAGAGTATAAACGGTGATATGACAAGGCCTAAGCGAACAGAAAATAACAATGCACTAGAAGGTGATGATGCGTGTTCTCCGTGTATTCCTAGTGGTGATGGAAATGGCCCTATGGCAACAGGCAGTGATGAGCGTCGCCGGAAAAATGGAGCAGTTGCTCTACAATGTGCATACTGTGGTGAGCGAACTCGAAGTAGAGCTGAACTCGAAGCACACACGCGTGCACATTCAGGAACAGGTGCTGCACGACATAAGTGTCTCATTTGCGATGAAGTGCTTCCTTCGGCTGCAGTCCTAGCGGAGCACAAATTAACCCATTGCAAGGTAATTGCGGGTGACACATGCTCTCGATGTCGTTCCAGACTACCTACGGAAGAAGCTTTTCTGAACCATATGGCCCGTCATCATCCTGCTCTTCCTGCACCTTGCGTGGTATGTCGTCAAACTTTGGCATCGGAGGCAGAAGCGCGATTACATGCAAGATTTCATTTAAGGCCAACTGAAGATGAACAAAGATGCGCCATATGTCTCAGACCTCTATCTGAAACTGAAGCAGGTGAAGGTGCCCGAGCATGCACCGCCTGTTACGCTCGTCATGCTGCTCCGAGACCTACACCTTCCTCCGAACACGATTGCCGGCTATGCCGTAGAACTTTGGGTTCACCCACACGATTACAAGCTCATTTAATTGAGCATACATTTGCAGGTATAGGAGCATTTACATGTTACTTATGTTCAGCGATGTTTACAAGTGCTGCGGGATTGCAAAGGCATTTACCAGAACATGCTGCTGCTCCGAGACCGTACGATTGTGGCCGATGTGGTTTGAAGTTTTTCTTTCGAGCTGAACTAGATAACCATGCCTTTGTTCATCTTGAAGAGGCAGAAATAGCACAAAGAGCATTTTATGAAGCTTACGCCCGCGGGGCTGCGACAGCGTGGGCAGCATTGCAACCTACTGATCTAGCGCTACAGCCTTCGGCATCGACTCCAGCTCCAGTGAATGATATACCAATAAAACAGGAACCAGAAGTAAAGGAAGAACGAAATGATGAATATATAGAAGTGTCGTCTCCCCCTCCTCCTGTAGCACTACAATCAGAGACGTCATCACCACCTCCGATAATAAAACAGGAAAAAAATAATGAAGACTGA
Protein Sequence: MLSNVWRLSLIGEAPAEVSQTPQLGNELPPPTAAAPIAPELLQSQLITFYNRSPLNVALKNIVLENITYYLFFCRAEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAVDADADADPPFTLGATEHTPYKCQFCEKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTAHMQGHKREREGRESDRKRALRCLRCGDAFRRPEMLQAHMASAHGMDAISVTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGESPIHYSIEQPLPTDLSRRSPEEVSPAKRPRLGSGSSTPKIALSPSTLLCNQCDAALPDFEAFRAHLKGHIEEGGDIGRSSPAPCLHCGATFADAAASERHLAAHYLAVSCEYSXXXXXXXXXXXXXXXKHLLDLHAHHLYRCTLCKEIFDSKVAIQAHFAVAHTGENKVWVCRSCGTAGGPLRTEAEGAAHVRARHAAARCACGAILAGSRALRAHTAAHHAYRCPVPSCTDTFAVQYLLERHMQVHHAVTHQSINGDMTRPKRTENNNALEGDDACSPCIPSGDGNGPMATGSDERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGTGAARHKCLICDEVLPSAAVLAEHKLTHCKVIAGDTCSRCRSRLPTEEAFLNHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPTEDEQRCAICLRPLSETEAGEGARACTACYARHAAPRPTPSSEHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHAAAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALQPTDLALQPSASTPAPVNDIPIKQEPEVKEERNDEYIEVSSPPPPVALQSETSSPPPIIKQEKNNED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00842895;
90% Identity: iTF_00695901;
80% Identity: -