Pdid003892.2
Basic Information
- Insect
- Philaethria dido
- Gene Symbol
- L_1
- Assembly
- GCA_033558755.1
- Location
- JAKGSA010000136.1:4761557-4765048[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.4 1.7e+02 3.3 1.5 14 23 18 27 16 27 0.93 2 16 1.5e-05 0.001 19.7 0.1 1 23 33 55 33 55 0.98 3 16 0.0018 0.12 13.2 0.1 2 23 71 93 70 93 0.94 4 16 5 3.6e+02 2.3 0.1 9 23 124 139 120 139 0.93 5 16 0.25 18 6.4 0.0 3 23 194 214 193 214 0.97 6 16 0.12 8.2 7.5 0.0 2 23 228 249 227 249 0.91 7 16 3.2e-05 0.0022 18.7 1.1 1 23 257 280 257 280 0.94 8 16 0.015 1.1 10.3 0.1 1 23 285 308 285 308 0.93 9 16 0.00014 0.0096 16.7 0.2 1 23 368 392 368 393 0.95 10 16 0.00083 0.059 14.2 0.0 2 23 447 468 446 468 0.96 11 16 0.43 30 5.7 0.0 1 23 476 498 476 498 0.95 12 16 6.3 4.5e+02 2.0 0.7 2 23 506 527 505 528 0.90 13 16 8 5.7e+02 1.7 0.0 3 23 535 555 534 555 0.93 14 16 0.39 27 5.8 0.6 1 23 602 624 602 624 0.94 15 16 0.0072 0.51 11.3 0.1 1 20 632 651 632 654 0.95 16 16 0.085 6 7.9 0.3 1 23 661 683 661 683 0.94
Sequence Information
- Coding Sequence
- ATGGTGAGCAGAGCCATTAGTGGAGGTGTTTGGGAGAACGCTTCCATTCTtgaTCATTTGAAGATTCATATGAAGACTCATGACAATCAAAAACCGTTTCAATGTACCGTATGCAACCGTGGCTATAACACTGCTGCTGCATTAACAGCCCATATGCAGGGCCACAAACGTGACCGAGAAGGACGTGAAACTGATCGAAAACGAGCTTTGCGATGCCTACGGTGCGGTGATGCATTTCGGCGCCCGGAAATGTTGCAAgcGCATATGGTCAGCGCTCATGATGCAGAGACGTCTGCAATGACACCACCACGTCGTGTCGTGGCACAGCCACCGCCTACTTTACTTGCTTGCATTTACTGCACCCGAGATACTTTTACCAGCATGGAACAATTACAGCTACATGTACGTGCAGCTCATTCAGCACTCCTAAACGGGGAGTCCCCGGTACAACATAGTGAGCAACCTGCACCAACTGATCTTAGTAGACGCAGCCCAGGAGATGTGTCTCCCGCTAAAAGAGCAAGATTGAGTTCAGCTTCTTCAACACCAAAAACCACGCTATCTCCAAGCACACTTTTATGCAATCAATGCGATGCGGCATTACCGGATTTTGAAGCTTTTCGCGCTCATTTAAAAGGTCATCTTGAAGAAGGAGGAGAATTAGGAAGATCTAGCCCTACACCTTGTCTTCATTGTGGGGCTACATTTGCAGATGCAGCAGCATCAGAACGACACCTTGCTGCACATTATTTGGCCGTATCTTGTGAATATACATGTCATAGTTGTGTCCGCAGTTTCTCCTCTCCTGAAGATTTGCAAAAACATCTTCTCGATCTTCACGCTCATCATCTTTATCGCTGTACtttatgtaaagaaatatttgattcAAAAGTGGCTATTcagGCACATTTCGCGGTGGCTCATAACGGAGAAAGCAAAGTATGGGTATGTCGATCTTGTGGTGCAGCTGGAGGTGCTCTACGAAGTGAGGCTGAAGGTGCAGCACACGTGCGGGCGCGACACGCAGCAGCGCGTTGTGCTTGTGGTGCAGTCCTCGCGGGCGCACGGGCATTGCGAGCTCATGCCGCCGCACACCACGCCTACCGCTGTCCAGTACCAGCTTGCACTGAGACCTTCGCTGTTCAATATTTATTAGAGCGCCACATGCAAGTGCATCACACTATTGCACATCAGGGCATAAACGGTGATATGACAAGAGGAAAACGGACAGAGAATAACAACGCTATTGAAACCGAAGATGCTTGTTCTCCGTGTGTTCCGGATAATGGAATGCCGGTTGTGGACGAACGACGGCGTAAGAATGGCGCAGTAGCACTACAATGCGCGTATTGCGGTGAAAGGGCTCGGAGCAGAGCCGAGCTCGAGGCTCACACCAGAGCTCACTCAGGAACAGGTGCCGCAAGACATAAGTGTCTCATTTGCGATGAAGTTCTACCATCTGCTGCGATTCTCGCTGAACATAAATTAACTCATTGCAagGTGATAGCAGGAGATACTTGTGCAAGATGTCGTTCTCGGCTTCCCTCAGAAGAAGCTTTTCTGAGTCATATGGCACGTCATCATCCTGCATTGCCCGCTCCCTGCGTTATATGCCGCCAAACTTTAGCCTCTGAGGCAGAAGCAAGGCTGCATGCAAGATTTCATTTACGACCGACAGAAGATGAGCAGAGATGCGCAATTTGCCTTAGAACTCTAACTGAAAGTGAAGCTGGCGAAGGAGCAAGGGCTTGTACGTCTTGTTATGCTCGACATGCAACGCCGAGGCCTTCGGTGAGCACTGAACACGATTGCCGACTCTGCCGCCGTACGCTTGGCTCTCCCACTCGCTTACAGGCGCATCTCATCGAACATACATTTGCTGGTATTGGAGCATTTACGTGCTATTTATGCTCCGCCATGTTCACAAGTGCCGTTGGCTTACAGAGACACTTGCCTGAACACGCAGCAGCACCTAGACCTTACGATTGTGGTAGATGTGGTCTTAAATTTTTCTTCCGAGCTGAGCTCGATAACCATGCATTTGTTCATCTTGAAGAAGCCGAAATAGCTCAGAGGGCATTTTATGAGGCATATGCTAGGGGGGCCGCTACAGCTTGGGCAGCTTTGCAGCCTACAGATTTAGTTCCTCAATCATCGGTTTCGACACCTGCGCCAACGGAATTGCCAATAAAACAAGAACCCGAGATAAAAGAAGAACGTAACGATGAATATATAGAAGTGTCTTCTCCTCCTCCTGCGCCTACACAATCTGAGGAAGCATCTCCTTCACCAATGGTAAAGCAGGAGAAAAGTAGTGAAGACTGA
- Protein Sequence
- MVSRAISGGVWENASILDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTAHMQGHKRDREGRETDRKRALRCLRCGDAFRRPEMLQAHMVSAHDAETSAMTPPRRVVAQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGESPVQHSEQPAPTDLSRRSPGDVSPAKRARLSSASSTPKTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGRSSPTPCLHCGATFADAAASERHLAAHYLAVSCEYTCHSCVRSFSSPEDLQKHLLDLHAHHLYRCTLCKEIFDSKVAIQAHFAVAHNGESKVWVCRSCGAAGGALRSEAEGAAHVRARHAAARCACGAVLAGARALRAHAAAHHAYRCPVPACTETFAVQYLLERHMQVHHTIAHQGINGDMTRGKRTENNNAIETEDACSPCVPDNGMPVVDERRRKNGAVALQCAYCGERARSRAELEAHTRAHSGTGAARHKCLICDEVLPSAAILAEHKLTHCKVIAGDTCARCRSRLPSEEAFLSHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPTEDEQRCAICLRTLTESEAGEGARACTSCYARHATPRPSVSTEHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAVGLQRHLPEHAAAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALQPTDLVPQSSVSTPAPTELPIKQEPEIKEERNDEYIEVSSPPPAPTQSEEASPSPMVKQEKSSED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842895;
- 90% Identity
- iTF_00778181;
- 80% Identity
- -