Oiva004741.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- L
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000003.1:14420768-14437445[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1e-05 0.0011 20.7 4.1 1 23 31 53 31 53 0.99 2 15 1.6e-05 0.0016 20.2 0.1 1 23 59 81 59 81 0.98 3 15 0.00081 0.081 14.8 0.3 2 23 97 119 96 119 0.94 4 15 7.9 8e+02 2.3 0.1 9 23 150 165 146 165 0.93 5 15 0.4 40 6.4 0.0 3 23 219 239 218 239 0.97 6 15 0.22 22 7.2 0.0 3 23 254 274 253 274 0.91 7 15 0.00023 0.023 16.6 1.6 1 23 282 305 282 305 0.91 8 15 0.012 1.2 11.1 0.1 1 23 310 333 310 333 0.94 9 15 6.9e-05 0.0069 18.2 0.3 1 23 393 417 393 418 0.96 10 15 0.00026 0.026 16.4 0.1 2 23 477 498 476 498 0.96 11 15 0.076 7.7 8.6 0.0 1 23 506 528 506 528 0.98 12 15 10 1e+03 2.0 0.7 2 23 536 557 535 558 0.90 13 15 0.61 61 5.8 0.6 1 23 632 654 632 654 0.94 14 15 0.0071 0.71 11.9 0.1 1 20 662 681 662 684 0.95 15 15 0.13 13 7.9 0.3 1 23 691 713 691 713 0.94
Sequence Information
- Coding Sequence
- ATGCCATTCCGCTGCGAGTTCTGTTCGCACCTGTTCAAGCACAAGCGTTCCCGCGACCGCCACGTCAAGCTGCACACCGGCGACCGCAAGTACCGCTGCGCACACTGCGAATCTGCTTTCTCCAGGAGTGACCATCTGAAGATACACATGAAAACGCACGACAACCAAAAACCGTTCCAATGCACCGTGTGTAACCGCGGCTACAGCACGGCTGCCGCGCTCACGTCCCACATGCAGGGCCACAAGCGGGAGCGCGAGGGGCGTGAGTCCAGTCGGAAGCGAGCCTTGCATTGCTTGCGGTGCGGAGATTCCTTCCGGCGACCGGATCTATTAcaaGCTCACATGGCAAGCGTCCATGGCGTTGACTCAACCTCAATGACACCTCCACGTCGAGTCGCATCTCAGCCGCCACCCACTCTTCTTGCTTGCATATATTGCACCCGAGATACTTTCACTAGTATGGAACAGTTGCAACTCCACGTACGCGCAGCTCATTCAGCGCTGCTGAACGGAGAAACTTCAGCACAATACACAGTTGAGCAGCCAATGCCCACCGACCTGAGTAGGCGCAGTCCTGAAACACCAACGCCAGCTAAGCGTAATAGGCCAGGCTCTGCAACACCCAAGAGTTCTCTATCCCCGAGCACACTTCTATGTAACCAATGCGATGCTGCGCTACCAGACTTCGAAGCGTTCCGAGCCCATTTGAAAGGGCATCTTGAAGAAGGGGGAGAGTTGGGAAGGACGAGCCCGGCGCCATGCTTGCACTGCGGCGCGACGTTCGCCGACGCAGCGGCCTCCGAGCGACACCTGGCCGCGCATTACCTTGCTGTGTCTTGTGAATATTCTTGCCACAGTTGTGTGCGCAGTTTTTCCTCGCCGGAAGATTTGCAAAAACACCTGTTCGACATGCACTCTCACCACATGTATCAGTGCAATCTTTGCAAAGAGATATTTGATTCTAAAGTAGCCATTCAGGCTCATTTCGCGATGTCTCATAGCGCTGAGAACAAAGTGTGGGTGTGTCGCTCCTGTGGTTCGGCGGGCGGGGCGCTGCGCACGGAAGCGGAGGGTGCAGCGCACGTGCGCGCGCGACACGCGGCGTCGCGCTGCGCGTGCGGCGCCGTGCTCGCGGGCGCACGCGCGCTGCGCGCACACGCGGCCGCACACCACACCTACCGCTGCCCTGTCCCCACTTGTACTGAATCTTTCGCCGTGCAGTATCTGCTCGAGCGTCACATGCAAGCGCATCATGCTGTTGGGCACCAAGGTCTCAACGGCGATATGATAAGAAGCAAGAGAACAGAAAATAACAACGCCGCGGAAGGCGAAGGAGCGAGTTCTCCCTGCATCAGTGGAGGAGACGGCAGCGGGCCGATGGTGTCGGGCGGGGAGGAGCGCAGGCGCAAGAACGGCGCAGTGGCGTTGCAGTGCGCGTACTGCGGCGAGCGCACGCGCAGCCGCGCGGAGTTGGAGGCGCACACGCGCGCGCACGCCGGCGCGGGCGCCGCGCGACACAAGTGTCTCATCTGTGATGAGGTCCTGCCCTCCGCTGCCGTCCTCGCCGAGCATAAACTTACGCATTGCAAGgtAGTTGCCGGTGACACCTGTGCTCGCTGTCGCTCCAGGCTGCCATCAGAAGAAGCGTTCTTGAGTCACATGGCCCGTCACCATCCTGCACTGCCGGCCCCTTGCGTCATATGTCGCCAAACGTTAGCTTCAGAGGCTGAGGCGCGCTTGCACGCCCGTTTCCACTTACGACCGAATGAAGATGAACAGAGGTGTGCGATATGCCTGAGAGCGTTGTCCGAGAGTGAGGCTGGGGAGGGTGCTCGGGCCTGTACTTCTTGCTATGCTCGCCACGCTGCCCCTAGACCTCCTCCGCCCTCTGACCACGACTGCCGTCTATGCCGAAGGACTCTGGGCTCTCCTACCCGCTTGCAAGCACATCTCATTGAACACACGTTTGCAGGTATAGGGGCGTTCACGTGTTATCTCTGCTCTGCAATGTTCACAAGTGCGGCAGGGTTGCAAAGGCATCTGCCCGAGCATGCCTCAGCACCTCGACCTTACGATTGCGGCCGATGCGGTTTGAAGTTCTTCTTTCGAGCGGAACTCGATAACCACGCATTCGTTCATATCGAAGAAGCAGAACTCGCTCAGAGAGCATTTTACGAAGCCTACGCTCGTGGGGCGGCGTCGGCTTGGGCTGCTTTGCAACCGACAGACTTGGTGTCCACACCAGCTTCGGTAGATAATGAGGTGCCAGTCAAGCAAGAGCCTGAGGTGAAAGAAGAGTATATTGAGGTGTCATCGCCCCCGCCGCCCCCGCCTCCTCAGACCGAGCCGGCGACCACTTCTCCGCCGGTCGTGAAACAAGAGAAGCCCGACGAAGACTGA
- Protein Sequence
- MPFRCEFCSHLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQGHKREREGRESSRKRALHCLRCGDSFRRPDLLQAHMASVHGVDSTSMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETSAQYTVEQPMPTDLSRRSPETPTPAKRNRPGSATPKSSLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGRTSPAPCLHCGATFADAAASERHLAAHYLAVSCEYSCHSCVRSFSSPEDLQKHLFDMHSHHMYQCNLCKEIFDSKVAIQAHFAMSHSAENKVWVCRSCGSAGGALRTEAEGAAHVRARHAASRCACGAVLAGARALRAHAAAHHTYRCPVPTCTESFAVQYLLERHMQAHHAVGHQGLNGDMIRSKRTENNNAAEGEGASSPCISGGDGSGPMVSGGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHAGAGAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRSRLPSEEAFLSHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPNEDEQRCAICLRALSESEAGEGARACTSCYARHAAPRPPPPSDHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHASAPRPYDCGRCGLKFFFRAELDNHAFVHIEEAELAQRAFYEAYARGAASAWAALQPTDLVSTPASVDNEVPVKQEPEVKEEYIEVSSPPPPPPPQTEPATTSPPVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842895;
- 90% Identity
- iTF_00954845;
- 80% Identity
- -