Dple008412.1
Basic Information
- Insect
- Danaus plexippus
- Gene Symbol
- L
- Assembly
- GCA_018135715.1
- Location
- CM030911.1:5400868-5416772[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.4e-06 9.9e-05 22.9 1.7 1 23 87 109 87 109 0.99 2 18 0.61 42 5.2 5.8 1 23 115 137 115 137 0.97 3 18 1.2e-05 0.00083 20.0 4.3 1 23 143 165 143 165 0.99 4 18 2.5e-05 0.0018 18.9 0.1 1 23 171 193 171 193 0.98 5 18 0.00091 0.064 14.0 0.1 2 23 209 231 208 231 0.95 6 18 0.94 65 4.6 0.2 9 23 262 277 258 277 0.96 7 18 0.29 20 6.2 0.0 3 23 333 353 332 353 0.97 8 18 5.7e-05 0.004 17.8 1.6 1 23 396 419 396 419 0.91 9 18 0.021 1.5 9.7 0.1 1 23 424 447 424 447 0.93 10 18 6 4.2e+02 2.0 0.1 6 23 487 504 486 505 0.92 11 18 0.00095 0.066 14.0 0.2 1 23 507 531 507 531 0.98 12 18 0.00019 0.013 16.2 0.1 2 23 589 610 588 610 0.96 13 18 0.056 3.9 8.4 0.0 1 23 618 640 618 640 0.97 14 18 7.3 5.1e+02 1.8 0.7 2 23 648 669 647 670 0.90 15 18 9.3 6.4e+02 1.4 0.0 3 23 677 697 676 697 0.93 16 18 0.45 31 5.6 0.6 1 23 744 766 744 766 0.94 17 18 0.0052 0.36 11.7 0.1 1 20 774 793 774 796 0.95 18 18 0.098 6.8 7.7 0.3 1 23 803 825 803 825 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTATTCAAAGGGAACAGCAGCAGGCTGGAGCATCTCATAGAGAAGATCCAGGCCAATAAAGAGAACCACGAGGGTATATCCGAAGACATTAAACAGGCGTTGGGTAGTGTGGGAAGTACGGCTGGTAGTTCGTGGCCGTCTTCGACTCCTGAGCCGTCTCCATCACCATCCTCTACTCCGACATCAGCAGATGCTGTCGATGCGGACGCAGACCCACCATTCACACTGGGAGCCACCGAACACACTCCATACCAATGCCAGTTTTGCGACAAGGCGTTTCCCAGACTTTCTTATCTCAAGAAGCATGAACAGACGCATTCAGATCAAATGCCGTTTCGTTGCGAATTCTGCTCTCGTCTGTTTAAACACAAACGCTCCCGCGATCGCCACGTCAAACTTCACACAGGCGACAGAAAGTACAGATGTGTCCACTGCGAATCCGCTTTTTCCAGAAGTGACCATCTCAAGATTCACATGAAGACTCATGACAATCAGAAACCGTTCCAATGTACAGTTTGTAACCGGGGATACAATACAGCAGCAGCTCTCACATCACATATGCAGGGTCACAAGAGAGACCGAGAGGGTCGTGATAATGATCGAAGAAGAGCATTACGTTGTCTGCGTTGTGGAGATGCATTTAGAAGAGCTGATATGCTCCAGGCTCATATGATAAGTGCTCATGGAGTTGATGCGGAATCTATGACTCCGCCGCGTCGAGTTGCTTCACAGCCACCACCCACTTTACTAGCTTGCATATATTGCACTCGCGATACTTTTACCAGTATGGAACAGCTACAATTACACGTACGAACAGCCCATTCTGCATTATTAAATGGAGAAACACCAATTCAGTTCTCGGTAGACCAACCAGGACCGACAGACTTAAGTAGACGAGCTTCAGAAGATGTTTCTCCAGTAAAACGGCCAAGACTTAGCTCAGGTTCTACTACGCCTAAGAATGCTTTATCACCAAGTACTCTACTTTGTAATCAATGTGATGCAGCTCTGCCTGATTTCGAAGCTTTTAGAGCCCATTTGAAGGGTCATCTTGAAGAAGGAGGGGAACTTGGGCGAACTAGTCCAAGTCCTTGTATCCATTGTGGAGCAACATTTGCAGACGTGGCAGCTTCTGAGCGCCACCTTGCAGCACATTATTTAGCTGTATCGTGTGAATATACATGTCACAGTTGTACGCGCAGTTTTCCTACTCCCGAAGATTTGCAGAAGCATCTCTTCGATTTACACACTCACCATATGTATAGATGTACATTCTGTAAAGAAATATTTGATTCCAAAGTTGCTATACAGGCTCATTTCGCGGTGGCACACAGTGGAGAGAACAAAGTGTGGGTTTGTCGATCATGTGGGGCCGCGGGTGGCCCGATGCGATCAGAGGCGGAGGGGGCCGCACACGTGCGAGCGAGGCATGCGGCAGCTCGCTGCTCCTGCGGAGCTGTACTGTCCGGTTCGAGAGCTCTACGAGCTCATGCTGCCTCACATCACGCATACCGCTGCCCTATCTCCACATGCAGCGACTCCTTTGCCGTGCAATATCTCCTAGAGCGACATATGCAAGTGCATCAAGCGATCACGCATCAGAATGTCAACGGTGAGAGAAACAAGCGAAATGAGAACAACAACGCCGTTGATGGCGATGGGGCGTGTTCTCCATGTATCTCCGGTGCGGATAATAATGGTCCTATTCCAACTGTTGGAGAAGAAAGACGACGAAAAAATGGTGCAGTAGCGCTACAATGTGCTTATTGTGGAGAAAGAACTCGTAGCCGAGCGGAGTTAGAGGCCCATACTCGAGCACATTCTGGTGCAGGCGCAGCGAGGCATAAATGTCTTATATGTGATGAAGTTCTACCATCAGCTGCAGTGCTGGCTGAACATAAACTTACGCATTGCAAGGTGGTAGCTGGAGATACGTGTGCCCGATGTCGCTCACGTCTGCCTTCAGAAGAAGCGTTCTTGAGTCATATGGCACGACATCATCCTGCCTTACCAGCGCCGTGTGTTATATGTCGTCAAACATTGGCTTCGGAGGCTGAAGCACGTTTACATGCCCGTTTCCATTTACGGCCGTCTGCAGACGAACAAAGATGTGCGATATGTCTTAGAGCTTTATCCGAGAGTGAAAGCGGTGAAGGTGCAAGAGCATGTTCCACTTGCTATGCCAGACACGCAGCTCCTAGACCACAGACAACTACCGATCATGACTGTAGGTTATGTCGAAGAACATTAGGTTCCCCTACTCGTCTACAAGCTCACTTAATTGAACACACATTTGCTGGTATAGGTGCATTCACATGCTACCTGTGCTCCGCGATGTTTACGAGTGCTGCAGGCCTGCAAAGACATTTACCAGAACATGCTGCTGCTCCAAGACCTTACGATTGTGGCCGATGTGGTTTAAAATTCTTTTTTAGAGCCGAACTAGATAACCACGCTTTTGTACATCTTGAGGAAGCTGAAATTGCTCAAAGAGTTTTCTACGAGGCTTATGCACGAGGAGCAGCAACCGCATGGGCTGCTTTGCAGCCAACTGATATACAACCACAATCATCAGCTTCAACACCAGCCCCTACAATAAGTGACGTTAAACAAGAACCAGAAATAAAGGAGGAACGTAACGATGAGTATATAGAAGTATCATCGCCGCCTCCGAAACAATCTGAGCCAGCAACGTCTCCTACTCCAATGATAAAACAAGAGAAAACAGACGAAGACTGA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHEGISEDIKQALGSVGSTAGSSWPSSTPEPSPSPSSTPTSADAVDADADPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCVHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRDNDRRRALRCLRCGDAFRRADMLQAHMISAHGVDAESMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRTAHSALLNGETPIQFSVDQPGPTDLSRRASEDVSPVKRPRLSSGSTTPKNALSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGRTSPSPCIHCGATFADVAASERHLAAHYLAVSCEYTCHSCTRSFPTPEDLQKHLFDLHTHHMYRCTFCKEIFDSKVAIQAHFAVAHSGENKVWVCRSCGAAGGPMRSEAEGAAHVRARHAAARCSCGAVLSGSRALRAHAASHHAYRCPISTCSDSFAVQYLLERHMQVHQAITHQNVNGERNKRNENNNAVDGDGACSPCISGADNNGPIPTVGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAGAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRSRLPSEEAFLSHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPSADEQRCAICLRALSESESGEGARACSTCYARHAAPRPQTTTDHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHAAAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRVFYEAYARGAATAWAALQPTDIQPQSSASTPAPTISDVKQEPEIKEERNDEYIEVSSPPPKQSEPATSPTPMIKQEKTDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842895;
- 90% Identity
- iTF_00960338;
- 80% Identity
- -