Dlor011617.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- L
- Assembly
- GCA_963555665.1
- Location
- OY743093.1:7689851-7698073[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.4e-06 0.00012 22.9 1.7 1 23 65 87 65 87 0.99 2 18 1.4 1.2e+02 4.1 4.8 1 23 93 115 93 115 0.97 3 18 8.2e-06 0.00071 20.5 4.1 1 23 121 143 121 143 0.99 4 18 2.5e-05 0.0022 19.0 0.1 1 23 149 171 149 171 0.98 5 18 0.0021 0.18 12.9 0.1 2 23 187 209 186 209 0.94 6 18 0.94 81 4.6 0.2 9 23 240 255 236 255 0.96 7 18 0.29 25 6.2 0.0 3 23 311 331 310 331 0.97 8 18 7.9 6.9e+02 1.7 0.0 3 23 346 366 345 366 0.86 9 18 0.00019 0.016 16.3 1.0 1 23 374 397 374 397 0.91 10 18 0.0075 0.65 11.2 0.1 1 23 402 425 402 425 0.93 11 18 0.0021 0.18 12.9 0.1 1 23 479 503 479 503 0.98 12 18 0.00019 0.017 16.2 0.1 2 23 561 582 560 582 0.96 13 18 0.056 4.8 8.5 0.0 1 23 590 612 590 612 0.97 14 18 4.7 4.1e+02 2.4 0.7 2 23 620 641 619 642 0.91 15 18 9.3 8e+02 1.5 0.0 3 23 649 669 648 669 0.93 16 18 0.45 39 5.6 0.6 1 23 716 738 716 738 0.94 17 18 0.0052 0.45 11.7 0.1 1 20 746 765 746 768 0.95 18 18 0.098 8.5 7.7 0.3 1 23 775 797 775 797 0.94
Sequence Information
- Coding Sequence
- ATGTCTCTAATTTCGTTATGTTATCTGGCAGAGGCGCTGGGCAGCGTGGGGAGCACGGCGGGCAGCTCGTGGCCGTCGTCAACGCCGGAGCCGTCCCCGTCGCCGGCCTCCACGCCCACCTCGGCGGATGCGGTCGACGCCGACGCTGACACCGAGCCGCCCTTCACGCTGGGCGCCACCGAGCACACCCCTTATCAATGCCAGTTCTGCGACAAGGCATTCCCCAGACTTTCGTatctaaaaaaacatgaacagaCCCACTCAGATCAAATGCCATTCCGGTGTGAGTTCTGTGCTCGTCTGTTCAAACACAAGCGGTCTCGTGATCGCCACGTCAAGCTGCACACTGGAGATAGAAAGTACCGATGTGCTCATTGTGAATCTGCTTTTTCCAGAAGtgatcATTTGAAAATTCATATGAAGACGCATGACAACCAGAAACCGTTCCAATGCACGGTATGCAATCGCGGATATAACACAGCCGCAGCGCTTACATCTCACATGCAAGGACACAAACGGGATAGGGAGGGACGGGATAACGATCGCAGAAGAACGTTGCGTTGTCTGCGTTGTGGAGACGCATTCAGAAGAGCTGATATGCTACAGGCTCATATGGTAAGTGCGCATGGGGTCGATGTAGCATCCATGACTCCACCACGGCGAGTTGCCTCTCAACCTCCTCCCACTTTACTCGCTTGCATATATTGCACTCGTGATACATTTACTAGTATGGAACAATTACAATTGCACGTACGAACAGCTCATTCCGCTCTACTGAATGGAGAATCAACAATTCAGTATTCCGAAGATCAGCCCGGTCCAACAGATCTGAGCAGACGAGCTTCAGAAGATGTTTCTCCAATAAAACGTCCGAGACTAAATTCCGGTTCCACTACACCAAAAAATGCACTATCGCCGAGTACGTTATTATGTAATCAGTGTGATGCGGCTTTGCCGGATTTCGAAGCGTTTCGAGCGCATTTAAAAGGTCATCTCGAAGAAGGTGGAGAATTAGGACGAACCGATCCGAGTCCATGCATTCATTGTGGAGGGAGTTTCGCCGACGCCGCCGCTTCCGAACGCCACCTCGCCGCACATTATTTGGCCGTATCCTGTGAATATACATGTCACAGCTGTGCGCGCAGTTTTCCGACTCCCGAAGACTTACAGAAGCATCTATTCGATTTACACACTCACCACCTGTACAGATGTACATTTTGTAAAGAAGTATTCGACTCCAAAGTAGCTATTCAGGCTCATTTTGCAGTAGCCCACAGCGGAGAAAAAAAAGTGTGGGTATGTCGTTCCTGCGGCGGCGCGGGCGGGCCGCTGCGCTCGGAGGCGGAGGGCGCGGCGCACGTGCGGGCGCGGCACGCGGCAGCGCGCTGCCCGTGCGGCGCCGTGCTGCGGGCGCGCGCGGCTACCCACCGCGCCTATCGCTGCCCCGTAGCCACCTGCACGGACGCCTTCGCCGTACAGTACCTCCTGGAGCGACACATGCAAGTGCATCAAGCGGTCGCGCATCAGACTATCGATGGCGATAGAACAAAACGGACGGAGAATAACAATGCCGTCGACGGTGATGATGCGTGTTCTCCATGTATTTCCGTTGCCGATAATAATGGGCCGATCGCAACCGGCGGCGAAGAACGACGACGCAAAAATGGTGCTGTGGCCCTCCAGTGTGCATATTGTGGGGAAAGAACGCGCAGCAGGGCGGAGCTGGAGGCTCACACTCGAGCACATTCGGGAACGGGCGCCGCCCGTCACAAGTGCCTCATTTGTGACGAAGTTCTGCCCTCGGCCGCGGTACTAGCTGAACATAAACTTACACACTGCAAGgttGTTGCCGGAGACACGTGTGCACGATGTCGCTCCCGACTACCGTCTGAGGATGCATTTTTAAGTCATATGGCACGTCACCATCCGGCTCTACCGGCACCTTGCGTCATTTGCCGTCAAACTTTAGCTTCAGAGGCTGAAGCTCGTTTACATGCACGTTTTCACCTCAGACCTTCAGAAGATGAACAAAGATGTGCAATATGTCTTAGAGCATTAACAGAAAATGAAGCTGGGGAAGGTGCTAGGGCATGTTCTGCTTGCTACGCGAGGCACGCCGCGCCGAGACCACAAACTACTACGGATCATGATTGTAGATTATGTCGCCGAACTCTGGGTTCACCAACTCGTCTACAGGCCCATCTTATCGAACATACATTTGCTGGCATAGGTGCTTTTACTTGTTATTTATGCTCCGCCATGTTTACGAGTGCAGCGGGACTACAGAGACATCTACCAGAGCACGCTGCTGCACCAAGACCCTACGATTGTGGACGATGTGGTTTGAAATTTTTCTTCAGAGCTGAGCTCGATAACCACGCTTTTGTACATCTTGAAGAAGCAGAAATTGCACAAAGAGCTTTTTACGAGGCCTATGCTCGAGGAGCTGCAACCGCTTGGGCTGCTTTACAACCAACTGAATTGCAATCGGCGGCTTCAACTCCTGCGCCTCCACTAAATAACATATCCGTTAAGCGAGAACCAGAAGTCAAGGAGGAACGCAACGATGAGTATATTGAAGTGGCATCGCCCCCACCACATAAAACTGAGCCAGCGTCATCACCTTCACCAACAGTAAAACAAGAGAAAAATGATGAAGACTGA
- Protein Sequence
- MSLISLCYLAEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAVDADADTEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCARLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRDNDRRRTLRCLRCGDAFRRADMLQAHMVSAHGVDVASMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRTAHSALLNGESTIQYSEDQPGPTDLSRRASEDVSPIKRPRLNSGSTTPKNALSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGRTDPSPCIHCGGSFADAAASERHLAAHYLAVSCEYTCHSCARSFPTPEDLQKHLFDLHTHHLYRCTFCKEVFDSKVAIQAHFAVAHSGEKKVWVCRSCGGAGGPLRSEAEGAAHVRARHAAARCPCGAVLRARAATHRAYRCPVATCTDAFAVQYLLERHMQVHQAVAHQTIDGDRTKRTENNNAVDGDDACSPCISVADNNGPIATGGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGTGAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRSRLPSEDAFLSHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPSEDEQRCAICLRALTENEAGEGARACSACYARHAAPRPQTTTDHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHAAAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALQPTELQSAASTPAPPLNNISVKREPEVKEERNDEYIEVASPPPHKTEPASSPSPTVKQEKNDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842895;
- 90% Identity
- iTF_00960338;
- 80% Identity
- -