Basic Information

Insect: Heliconius hermathena
Gene Symbol: L
Assembly: GCA_013403705.1
Location: JAAIXJ010001804.1:416115-433891[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.1e-06 0.00036 21.0 2.0 1 23 89 111 89 111 0.99

2 18 0.54 38 5.2 5.8 1 23 117 139 117 139 0.97

3 18 7.3e-06 0.00052 20.5 4.1 1 23 145 167 145 167 0.99

4 18 1.5e-05 0.0011 19.5 0.1 1 23 173 195 173 195 0.98

5 18 0.0018 0.13 13.0 0.1 2 23 211 233 210 233 0.94

6 18 5.2 3.7e+02 2.1 0.1 9 23 264 279 260 279 0.93

7 18 0.26 18 6.2 0.0 3 23 334 354 333 354 0.97

8 18 0.12 8.4 7.2 0.0 2 23 368 389 367 389 0.91

9 18 3.3e-05 0.0023 18.4 1.1 1 23 397 420 397 420 0.94

10 18 0.0055 0.39 11.4 0.1 1 23 425 448 425 448 0.93

11 18 0.0038 0.27 12.0 0.0 1 21 508 530 508 531 0.95

12 18 0.00087 0.061 14.0 0.0 2 23 579 600 578 600 0.96

13 18 0.44 31 5.5 0.0 1 23 608 630 608 630 0.95

14 18 6.5 4.6e+02 1.8 0.7 2 23 638 659 637 660 0.90

15 18 8.3 5.8e+02 1.5 0.0 3 23 667 687 666 687 0.93

16 18 0.4 28 5.6 0.6 1 23 734 756 734 756 0.94

17 18 0.0075 0.53 11.0 0.1 1 20 764 783 764 786 0.95

18 18 0.088 6.2 7.7 0.3 1 23 793 815 793 815 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.1e-06	0.00036	21.0	2.0	1	23	89	111	89	111	0.99
2	18	0.54	38	5.2	5.8	1	23	117	139	117	139	0.97
3	18	7.3e-06	0.00052	20.5	4.1	1	23	145	167	145	167	0.99
4	18	1.5e-05	0.0011	19.5	0.1	1	23	173	195	173	195	0.98
5	18	0.0018	0.13	13.0	0.1	2	23	211	233	210	233	0.94
6	18	5.2	3.7e+02	2.1	0.1	9	23	264	279	260	279	0.93
7	18	0.26	18	6.2	0.0	3	23	334	354	333	354	0.97
8	18	0.12	8.4	7.2	0.0	2	23	368	389	367	389	0.91
9	18	3.3e-05	0.0023	18.4	1.1	1	23	397	420	397	420	0.94
10	18	0.0055	0.39	11.4	0.1	1	23	425	448	425	448	0.93
11	18	0.0038	0.27	12.0	0.0	1	21	508	530	508	531	0.95
12	18	0.00087	0.061	14.0	0.0	2	23	579	600	578	600	0.96
13	18	0.44	31	5.5	0.0	1	23	608	630	608	630	0.95
14	18	6.5	4.6e+02	1.8	0.7	2	23	638	659	637	660	0.90
15	18	8.3	5.8e+02	1.5	0.0	3	23	667	687	666	687	0.93
16	18	0.4	28	5.6	0.6	1	23	734	756	734	756	0.94
17	18	0.0075	0.53	11.0	0.1	1	20	764	783	764	786	0.95
18	18	0.088	6.2	7.7	0.3	1	23	793	815	793	815	0.94

Sequence Information

Coding Sequence: ATGATAATGCTATTCAAAGGCAATAGCAGCAGACTAGAACATCTTATAGAAAAGATACAAGCCAATAAGGAAAACCACGACGTGACCCCAGAAGATTTAAAACAAGCACTGGGTAGTGTGGGCAGTACGGCGGGCAGCTCTTGGCCGTCGTCGACACCGGAGCCATCACCATCACCATCTTCAACGCCGACCTCAGCCGATGCAGTTGACGCCGACGCCGATGCCGAGCCTCCTTTTACACTTGGTGCTACTGAACATACGCCTTACAAATGCCAATTCTGTGAAAAAGCGTTCCCAAGACTTTCATACCTTAAGAAACATGAGCAGACACATTCCGACCAAATGCCGTTTCGATGTGAGTTCTGTTCCCGTCTGTTCAAGCACAAAAGATCCCGTGACCGCCATGTCAAGCTACATACTGGCGACAGAAAATACCGCTGTGCACATTGCGAATCTGCTTTCTCAAGAAGTGATCATTTGAAGATTCATATGAAGACTCATGACAATCAAAAGCCATTCCAATGTACAGTATGCAACCGTGGATATAACACCGCTGCCGCATTAACAGCTCATatgcagggacacaaacgtgaCCGAGAAGGACGTGAAACGGATCGGAAGAGAGCTCTGCGATGTCTGCGTTGCGGTGATGCATTTCGGCGGCCGGAAATGTTGCaagctCATATGGTCAGTGCTCATGGAGTAGATACGTCAGCAATGACAACACCACGTCGTGTAGCGTCGCAGCCACCGCCCACTTTACTCGCTTGTATTTACTGCACTCGGGATACTTTTACAAGCATGGAACAACTTCAACTGCATGTACGCGCGGCTCATTCAGCACTCCTAAACGGAGAGTCCCCCGTACAACATAGTGAACAACCCGCGCCAACTGACCTTAGCAGACGAAGTCCAGGGAATGAGTCTCCTGCTAAAAGAGCAAGATTGAGTTCAGGTGCCTCAACACCAAAAACCACACTGTCTCCAAGTACACTTTTATGCAATCAATGCGACGCAGCTTTGCCCGATTTTGAAGCTTTTCGCGCTCATTTAAAAGGTCACCTTGAAGAAGGCGGAGAATTAGCTAGATCTAGCCCTACACCTTGTCTCCATTGTGGGGCTACATTTGCAGATGCAGCAGCATCGGAACGACACCTTGCTGCACATTATTTGGCCGTGTCTTGCGAATATACTTGTCACAGTTGCGTCCGTAGTTTTTCCTCTCCTGAGGATTTGCAAAAACATCTACTCGATCTTCATGCTCATCATCTTTATCGTTGTACATTGTGTAAAGAAGTATTTGATTCAAAAGTGGCTATACaggCACATTTTGCGGTTGCTCATAACGGTGAAAACAAGGTGTGGGTGTGCCGGTCTTGCGGTGCGGCTGGAGGTGCTCTGCGGAGCGAGGCTGAAGGTGCAGCTCACGTCCGGGCGCGGCACGCGGCGGCGCGCTGTGCTTGCGGCGCCGTGCTCGCGGGCTCGCGGGCCTTGCGGGCTCATACTGCCGCACATCACGCCTATCGATGTCCAGTGCCAGCTTGCACTGAGACTTTCGCCGTTCAGTACTTATTAGAACGCCACATGCAAGGCATAAATGGAGACGAGCGAAGAGCTAAACGTACGGAGAACAATAACGCTCTTGAAAGTGAAGATGCTTGTTCTCCATGTGTTCCGGACAATGGACAGCCGACTGTGGACGAACGTCGACGTAAGAACGGTGCAGTGGCTCTACAGTGCGCATATTGCGGTGAGCGGGCTCGAAGCAGAGCTGAGCTCGAGGCTCATACCAGAGCTCACTCTGGAACAGGCACCGCAAGACATAAGTGTCTTATTTGCGATGAAGTATTACCATCTGCTGCGATCCTTGCAGAACATAAATTGACTCATTGCAAGGTGATAGCAGGAGATACGTGCGCAAGGTGTCGTTCTCGTCTTCCCTCAGAAGAAGCTTTCTTGAGTCACATGGCACGTCATCATCCTGCACTGCCTGCTCCCTGTGTTATATGCCGCCAAACTTTAGCATCAGAGGCGGAAGCACGATTACACGCTAGATTCCATCTACGACCAACAGAGGATGAGCAAAGATGCGCAATTTGTCTTAGAGCTTTAACTGAAAATGAAGCTGGTGAAGGGGCGAGGGCTTGTTCATCTTGTTATGCACGACATGCAACGCCAAGGCCTCCAGTGGCCACTGAACACGACTGCCGACTCTGTCGCCGTACTCTTGGCTCCCCCACTCGCTTACAAGCGCATCTAATCGAACACACATTTGCTGGTATTGGAGCATTTACATGCTACCTTTGCTCCGCAATGTTTACAAGTGCCGTTGGCTTGCAGAGACATTTGCCAGAACATGCAGCTGCACCGAGACCGTACGATTGTGGTAGATGTGGTCTCAAATTTTTCTTCCGAGCTGAGCTCGATAATCATGCATTTGTTCATTTAGAGGAAGCTGAAATAGCCCAGAGAGCATTTTATGAGGCGTACGCCAGAGGAGCTGCTTCAGCTTGGGCAGCTTTGCAGCCTTCGGACTTAGTTCCTCAACCATTGGTTTCGACACCTGCTCCAACGGAAGTGCCAATAAAGCAAGAACCAGAAATTAAAGAAGAACGCAATGATGAATATATAGAAGTATCGTCTCCCCCTCCTGCGTCTGTACAATCTGAGAAAATGTCTCCTTCACCAGTGGTGAAACAGGAGAAAAGTAATGAAGACTGA
Protein Sequence: MIMLFKGNSSRLEHLIEKIQANKENHDVTPEDLKQALGSVGSTAGSSWPSSTPEPSPSPSSTPTSADAVDADADAEPPFTLGATEHTPYKCQFCEKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTAHMQGHKRDREGRETDRKRALRCLRCGDAFRRPEMLQAHMVSAHGVDTSAMTTPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGESPVQHSEQPAPTDLSRRSPGNESPAKRARLSSGASTPKTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELARSSPTPCLHCGATFADAAASERHLAAHYLAVSCEYTCHSCVRSFSSPEDLQKHLLDLHAHHLYRCTLCKEVFDSKVAIQAHFAVAHNGENKVWVCRSCGAAGGALRSEAEGAAHVRARHAAARCACGAVLAGSRALRAHTAAHHAYRCPVPACTETFAVQYLLERHMQGINGDERRAKRTENNNALESEDACSPCVPDNGQPTVDERRRKNGAVALQCAYCGERARSRAELEAHTRAHSGTGTARHKCLICDEVLPSAAILAEHKLTHCKVIAGDTCARCRSRLPSEEAFLSHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPTEDEQRCAICLRALTENEAGEGARACSSCYARHATPRPPVATEHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAVGLQRHLPEHAAAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALQPSDLVPQPLVSTPAPTEVPIKQEPEIKEERNDEYIEVSSPPPASVQSEKMSPSPVVKQEKSNED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00842895;
90% Identity: iTF_00213801; iTF_00247428; iTF_00723369; iTF_00248334; iTF_00212815; iTF_00160062; iTF_00780431; iTF_00774663; iTF_00782828; iTF_01182094; iTF_00775444; iTF_00779675; iTF_00782011; iTF_00781213; iTF_00621423; iTF_00457429;
80% Identity: -